BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00017215
         (1044 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containi...   324   3e-86
ref|XP_002324203.1| predicted protein [Populus trichocarpa] gi|2...   298   1e-78
ref|XP_002309456.1| predicted protein [Populus trichocarpa] gi|2...   296   6e-78
gb|ABK96374.1| unknown [Populus trichocarpa x Populus deltoides]      296   6e-78
ref|XP_002516159.1| pentatricopeptide repeat-containing protein,...   287   3e-75

>ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  324 bits (830), Expect = 3e-86
 Identities = 165/270 (61%), Positives = 207/270 (76%), Gaps = 4/270 (1%)
 Frame = +1

Query: 247  MNLSRKGFP-NNLTLNTGIKATALNPNAAEFVPFSLRSTPGSTSPGEAPA-WDASGTSGK 420
            M+LS+KG P NN+ L++  K T LNPNAAEFVPF+LRS+ GSTS G+A A +  SGT GK
Sbjct: 1    MSLSKKGNPINNIKLDSTAKVTTLNPNAAEFVPFALRSSSGSTSTGDASARFTPSGTLGK 60

Query: 421  AVLDRTESSVSNNSDDEAHQYWRSHLPDDITPDFKFIEENETQGPASLPFARLSISDLGQ 600
            A LDR+ESS+SNNSD+EAHQYWR  LPDDITPDFK + E+E+Q    L  A LS+ D  +
Sbjct: 61   AKLDRSESSISNNSDEEAHQYWRCQLPDDITPDFKVMGEDESQALGGLSLAGLSLHDSTE 120

Query: 601  NSSFSASLA--LNKQQELSPQGIQHNNVIEKLRYSATPYVSEQSTAGFATLPSNPWEKHF 774
             S FSA     LN+QQELSP  +  N+  +K+RYSA+PY  + S+A F  LP+ PW+K  
Sbjct: 121  TSRFSAGSGYILNEQQELSPHHVNGNSFTDKMRYSASPYGEDPSSATFLHLPNKPWDKQI 180

Query: 775  PNGDQILGNGREGLPYNGNSGTKFMKDVLSEHAISDDSEISAVEFLASQFPGFAAESLAE 954
             +GDQ+L NGREG PYNGNS   F+ D+L+EHA+ D+++++ +EFLA QFPGFAAESL E
Sbjct: 181  VHGDQLLSNGREGTPYNGNSRHGFVNDMLNEHAMVDETDMNPLEFLALQFPGFAAESLTE 240

Query: 955  VYYANGCDLNLTIEMLTQLELQVDGGFNQN 1044
            VY+AN CDLN+TIEMLTQLELQVDGGF+QN
Sbjct: 241  VYFANECDLNMTIEMLTQLELQVDGGFSQN 270


>ref|XP_002324203.1| predicted protein [Populus trichocarpa] gi|222865637|gb|EEF02768.1|
            predicted protein [Populus trichocarpa]
          Length = 583

 Score =  298 bits (763), Expect = 1e-78
 Identities = 163/275 (59%), Positives = 192/275 (69%), Gaps = 10/275 (3%)
 Frame = +1

Query: 247  MNLSRKG-FPNNLTLNTGIKATALNPNAAEFVPFSLRSTP---GSTS--PGEAPAWDASG 408
            MNLS+KG   N+  L+   KAT LNPNAAEFVPFSLRS+    GSTS     A     SG
Sbjct: 1    MNLSKKGSLTNDTKLSLPNKATTLNPNAAEFVPFSLRSSSSPSGSTSNTTDAATKLATSG 60

Query: 409  TSGKAVLDRTESSVSNNSDDEAHQYWRSHLPDDITPDFKFIEENETQGPASLPFARLSIS 588
            T GK+VLDR+ESSVSN SDDEAHQ+WR  LPDDITPDFK + E+E+QG   L  A LS+ 
Sbjct: 61   TVGKSVLDRSESSVSNASDDEAHQFWRHQLPDDITPDFKVMNEDESQGLGGLSLAGLSLH 120

Query: 589  DLGQNSSFSAS----LALNKQQELSPQGIQHNNVIEKLRYSATPYVSEQSTAGFATLPSN 756
            D  +   F AS      L +QQE SP  I  ++  E +RY+   Y  + ++A F  LP+ 
Sbjct: 121  DSSEVPRFHASSRSGYVLTEQQEPSPHHINGSSFSENMRYAVASYGEDPTSASFLNLPTK 180

Query: 757  PWEKHFPNGDQILGNGREGLPYNGNSGTKFMKDVLSEHAISDDSEISAVEFLASQFPGFA 936
            PW+K   N DQ+L NGRE  PYNGNS   F  ++L EHAI DD+EI+ +EFLASQFPGFA
Sbjct: 181  PWDKQIANSDQLLSNGREVHPYNGNSRHGFRSEILGEHAIVDDTEINPLEFLASQFPGFA 240

Query: 937  AESLAEVYYANGCDLNLTIEMLTQLELQVDGGFNQ 1041
            AESLAEVY+AN CDLNLTIEMLTQLELQVDGGFNQ
Sbjct: 241  AESLAEVYFANACDLNLTIEMLTQLELQVDGGFNQ 275


>ref|XP_002309456.1| predicted protein [Populus trichocarpa] gi|222855432|gb|EEE92979.1|
            predicted protein [Populus trichocarpa]
          Length = 581

 Score =  296 bits (758), Expect = 6e-78
 Identities = 158/275 (57%), Positives = 193/275 (70%), Gaps = 9/275 (3%)
 Frame = +1

Query: 247  MNLSRKG-FPNNLTLNTGIKATALNPNAAEFVPFSLRSTPG-----STSPGEAPAWDASG 408
            M+LS+KG   N+  LN   KAT LNPNAAEFVPFSLRS+       S S   A  +  SG
Sbjct: 1    MSLSKKGSLTNDTKLNLPSKATTLNPNAAEFVPFSLRSSSSPSGSTSNSADAATKFTTSG 60

Query: 409  TSGKAVLDRTESSVSNNSDDEAHQYWRSHLPDDITPDFKFIEENETQGPASLPFARLSIS 588
            T GKAVLDR+ESSVSN SDDEAHQ+WR  LPDDITPDFK + ++E+QG   L  A LS+ 
Sbjct: 61   TVGKAVLDRSESSVSNASDDEAHQFWRHQLPDDITPDFKVMSDDESQGLGGLSLAGLSLH 120

Query: 589  DLGQ---NSSFSASLALNKQQELSPQGIQHNNVIEKLRYSATPYVSEQSTAGFATLPSNP 759
            D      ++S  +   L +QQE SP+ +  ++  EK+RY +  Y  + S+A F  LP+ P
Sbjct: 121  DSEVPRFHASSRSGYVLTEQQEPSPRHMNGSSFGEKMRYPSASYGEDPSSASFLNLPTKP 180

Query: 760  WEKHFPNGDQILGNGREGLPYNGNSGTKFMKDVLSEHAISDDSEISAVEFLASQFPGFAA 939
            W+K   NGD +LGNGRE  PYNGNS   F  ++L EHAI DD+EI+ + FLASQFPGFA 
Sbjct: 181  WDKQIANGDHLLGNGREVHPYNGNSRHGFRSEILGEHAIVDDTEINPLGFLASQFPGFAT 240

Query: 940  ESLAEVYYANGCDLNLTIEMLTQLELQVDGGFNQN 1044
            ESLAEVY+A+GCDLNLT+EMLTQLELQVDG FNQN
Sbjct: 241  ESLAEVYFASGCDLNLTVEMLTQLELQVDGSFNQN 275


>gb|ABK96374.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 581

 Score =  296 bits (758), Expect = 6e-78
 Identities = 158/275 (57%), Positives = 193/275 (70%), Gaps = 9/275 (3%)
 Frame = +1

Query: 247  MNLSRKG-FPNNLTLNTGIKATALNPNAAEFVPFSLRSTPG-----STSPGEAPAWDASG 408
            M+LS+KG   N+  LN   KAT LNPNAAEFVPFSLRS+       S S   A  +  SG
Sbjct: 1    MSLSKKGSLTNDTKLNLPSKATTLNPNAAEFVPFSLRSSSSPSGSTSNSADAATKFTTSG 60

Query: 409  TSGKAVLDRTESSVSNNSDDEAHQYWRSHLPDDITPDFKFIEENETQGPASLPFARLSIS 588
            T GKAVLDR+ESSVSN SDDEAHQ+WR  LPDDITPDFK + ++E+QG   L  A LS+ 
Sbjct: 61   TVGKAVLDRSESSVSNASDDEAHQFWRHQLPDDITPDFKVMSDDESQGLGGLSLAGLSLH 120

Query: 589  DLGQ---NSSFSASLALNKQQELSPQGIQHNNVIEKLRYSATPYVSEQSTAGFATLPSNP 759
            D      ++S  +   L +QQE SP+ +  ++  EK+RY +  Y  + S+A F  LP+ P
Sbjct: 121  DSEVPRFHASSRSGYVLTEQQEPSPRHMNGSSFGEKMRYPSASYGEDPSSASFLNLPTKP 180

Query: 760  WEKHFPNGDQILGNGREGLPYNGNSGTKFMKDVLSEHAISDDSEISAVEFLASQFPGFAA 939
            W+K   NGD +LGNGRE  PYNGNS   F  ++L EHAI DD+EI+ + FLASQFPGFA 
Sbjct: 181  WDKQIANGDHLLGNGREVHPYNGNSRHGFRSEILGEHAIVDDTEINPLGFLASQFPGFAT 240

Query: 940  ESLAEVYYANGCDLNLTIEMLTQLELQVDGGFNQN 1044
            ESLAEVY+A+GCDLNLT+EMLTQLELQVDG FNQN
Sbjct: 241  ESLAEVYFASGCDLNLTVEMLTQLELQVDGSFNQN 275


>ref|XP_002516159.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223544645|gb|EEF46161.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 1439

 Score =  287 bits (735), Expect = 3e-75
 Identities = 160/277 (57%), Positives = 192/277 (69%), Gaps = 11/277 (3%)
 Frame = +1

Query: 247  MNLSRKGFPNNLT-LNTGIKATALNPNAAEFVPFSLRSTP---GSTSPGEAPA--WDASG 408
            M+LS+KG   N T LN   KATALNPNAAEFVPFSLRS     GSTS   A    +  SG
Sbjct: 1    MSLSKKGSQTNTTKLNIPSKATALNPNAAEFVPFSLRSLSSPSGSTSNAAATTARFATSG 60

Query: 409  TSGKAVLDRTESSVSNNSDDEAHQYWRSHLPDDITPDFKFIEENETQGPASLPFARLSIS 588
              GKAVLDR+ESS+S  SD+EAHQ+WR  LPDDITPDFK + E+E+Q    L  A LS+ 
Sbjct: 61   PVGKAVLDRSESSISTTSDEEAHQFWRHQLPDDITPDFKVMGEDESQSLGGLSLAGLSLH 120

Query: 589  DLGQNSSFSASLA----LNKQQELSPQGIQHNNVIEKLRYSATPYVSEQ-STAGFATLPS 753
            D  +   F AS+     L +QQE SP+ I  ++  EK+RY+   Y  +  S AG+  LP+
Sbjct: 121  DSSEVPKFPASVGSGYILTEQQEPSPRHINGSSFSEKMRYAIASYGEDPTSAAGYLNLPT 180

Query: 754  NPWEKHFPNGDQILGNGREGLPYNGNSGTKFMKDVLSEHAISDDSEISAVEFLASQFPGF 933
             PW+K   N D +LGNGRE  PYNGNS   FM D+L E AI D+ +++ ++FLAS FPGF
Sbjct: 181  KPWDKQIINNDHLLGNGREVHPYNGNSRRGFMNDMLGEQAIVDEPDMNPLDFLASHFPGF 240

Query: 934  AAESLAEVYYANGCDLNLTIEMLTQLELQVDGGFNQN 1044
            AAESLAEVY+ANG DLNLTIEMLTQLELQVDGGFNQN
Sbjct: 241  AAESLAEVYFANGYDLNLTIEMLTQLELQVDGGFNQN 277