BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00017200
         (293 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002516677.1| pentatricopeptide repeat-containing protein,...    88   1e-23
ref|XP_003526715.1| PREDICTED: pentatricopeptide repeat-containi...    85   3e-23
ref|XP_003523367.1| PREDICTED: pentatricopeptide repeat-containi...    85   5e-23
ref|XP_002875957.1| EMB1796 [Arabidopsis lyrata subsp. lyrata] g...    83   7e-23
ref|XP_003602247.1| Pentatricopeptide repeat-containing protein ...    87   4e-22

>ref|XP_002516677.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223544172|gb|EEF45696.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 660

 Score = 87.8 bits (216), Expect(2) = 1e-23
 Identities = 40/62 (64%), Positives = 52/62 (83%)
 Frame = -3

Query: 186 IKMNALAYNSVL*ALIKNGKSDEALQLFEKMKDEHSPPRKLTVNLGSYNVIVDWFCEQGK 7
           ++MNA+AYNSVL AL KNGK D AL+LF++M  +H+PPR L VNLGS+NVIVD +C QG+
Sbjct: 318 VRMNAVAYNSVLDALCKNGKFDVALKLFDRMLQQHNPPRYLAVNLGSFNVIVDGYCAQGR 377

Query: 6   FD 1
           F+
Sbjct: 378 FE 379



 Score = 47.0 bits (110), Expect(2) = 1e-23
 Identities = 18/32 (56%), Positives = 25/32 (78%)
 Frame = -1

Query: 284 VNDGIVYGNLMKAYFFKGLDKEAMEIYADLLG 189
           + DG+VYG+LMK YF KG++ EAME Y + +G
Sbjct: 282 IEDGVVYGDLMKGYFMKGMENEAMECYEEAVG 313


>ref|XP_003526715.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49240-like [Glycine max]
          Length = 632

 Score = 84.7 bits (208), Expect(2) = 3e-23
 Identities = 38/65 (58%), Positives = 54/65 (83%)
 Frame = -3

Query: 195 VGSIKMNALAYNSVL*ALIKNGKSDEALQLFEKMKDEHSPPRKLTVNLGSYNVIVDWFCE 16
           +G  KM+A+ YNSVL AL KNG+ DEAL+LF++M  E+ PP++L+VNLGS+NVIVD +C 
Sbjct: 298 LGKKKMSAVGYNSVLDALSKNGRLDEALRLFDRMMKEYEPPKRLSVNLGSFNVIVDGYCG 357

Query: 15  QGKFD 1
           +G+F+
Sbjct: 358 EGRFE 362



 Score = 48.5 bits (114), Expect(2) = 3e-23
 Identities = 21/35 (60%), Positives = 27/35 (77%)
 Frame = -1

Query: 284 VNDGIVYGNLMKAYFFKGLDKEAMEIYADLLGVLK 180
           V DG+V+G LMK YF KG++KEAME Y ++LG  K
Sbjct: 268 VEDGVVFGCLMKGYFLKGMEKEAMECYEEVLGKKK 302


>ref|XP_003523367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49240-like [Glycine max]
          Length = 631

 Score = 84.7 bits (208), Expect(2) = 5e-23
 Identities = 38/65 (58%), Positives = 54/65 (83%)
 Frame = -3

Query: 195 VGSIKMNALAYNSVL*ALIKNGKSDEALQLFEKMKDEHSPPRKLTVNLGSYNVIVDWFCE 16
           +G  KM+A+ YNSVL AL KNG+ DEAL+LF++M  EH P ++L+VNLGS+NVIVD +C+
Sbjct: 298 LGKKKMSAVGYNSVLDALSKNGRFDEALRLFDRMMKEHEPLKRLSVNLGSFNVIVDGYCD 357

Query: 15  QGKFD 1
           +G+F+
Sbjct: 358 EGRFE 362



 Score = 47.8 bits (112), Expect(2) = 5e-23
 Identities = 22/35 (62%), Positives = 26/35 (74%)
 Frame = -1

Query: 284 VNDGIVYGNLMKAYFFKGLDKEAMEIYADLLGVLK 180
           V DGIV+G LMK YF KG++KEAME Y + LG  K
Sbjct: 268 VQDGIVFGCLMKGYFVKGMEKEAMECYEEALGKKK 302


>ref|XP_002875957.1| EMB1796 [Arabidopsis lyrata subsp. lyrata]
           gi|297321795|gb|EFH52216.1| EMB1796 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 632

 Score = 83.2 bits (204), Expect(2) = 7e-23
 Identities = 35/62 (56%), Positives = 53/62 (85%)
 Frame = -3

Query: 186 IKMNALAYNSVL*ALIKNGKSDEALQLFEKMKDEHSPPRKLTVNLGSYNVIVDWFCEQGK 7
           ++M+A+AYN VL AL +NGK DEAL+LF+ +K EH+PPR+L VNLG++NV+VD +C +G+
Sbjct: 309 VRMSAMAYNYVLEALSENGKFDEALKLFDAVKKEHNPPRRLAVNLGTFNVVVDGYCAEGR 368

Query: 6   FD 1
           ++
Sbjct: 369 YE 370



 Score = 48.9 bits (115), Expect(2) = 7e-23
 Identities = 20/33 (60%), Positives = 26/33 (78%)
 Frame = -1

Query: 287 FVNDGIVYGNLMKAYFFKGLDKEAMEIYADLLG 189
           FV+DG+VYG LMK YF K ++KEAME Y + +G
Sbjct: 272 FVDDGVVYGQLMKGYFMKEMEKEAMECYEEAIG 304


>ref|XP_003602247.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355491295|gb|AES72498.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 704

 Score = 86.7 bits (213), Expect(2) = 4e-22
 Identities = 41/65 (63%), Positives = 52/65 (80%)
 Frame = -3

Query: 198 FVGSIKMNALAYNSVL*ALIKNGKSDEALQLFEKMKDEHSPPRKLTVNLGSYNVIVDWFC 19
           FV   KM+ +AYNSVL AL KNGK DEA++LF++M  EH+PP KL VNLGS+NV+VD +C
Sbjct: 305 FVEGKKMSDIAYNSVLDALAKNGKFDEAMRLFDRMIKEHNPPAKLAVNLGSFNVMVDGYC 364

Query: 18  EQGKF 4
            +GKF
Sbjct: 365 AEGKF 369



 Score = 42.7 bits (99), Expect(2) = 4e-22
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = -1

Query: 284 VNDGIVYGNLMKAYFFKGLDKEAMEIYADL 195
           V DG+V G LMK YF KG++KEAME Y ++
Sbjct: 275 VEDGVVLGCLMKGYFLKGMEKEAMECYQEV 304