BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00017178
         (1999 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...    96   2e-35
gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indi...   117   6e-34
gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza ...   114   1e-33
gb|AAS55787.1| hypothetical protein [Oryza sativa Japonica Group...   103   3e-33
gb|AAX95129.1| retrotransposon protein, putative, unclassified [...    94   1e-32

>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score = 95.5 bits (236), Expect(5) = 2e-35
 Identities = 52/223 (23%), Positives = 99/223 (44%), Gaps = 5/223 (2%)
 Frame = +1

Query: 1279 WFELFPHASIQNIPISSSDHLYLSINLSG-----TTTNSKKPFRFFDMWTMDPTCKDTID 1443
            W   FP + + ++P   SDH+ +  ++ G     T T   K FRF  MW  +    + + 
Sbjct: 210  WKIKFPGSFVSHLPKRKSDHVPIVASVKGAQSAATRTKKSKRFRFEAMWLREGESDEVVK 269

Query: 1444 SAWKEKSVGSPALNVHYKMKNTSTKLQKWNVEVFGIITQQIKKVRKELELVCSSNMNDAT 1623
              W   +      +    +  T+ KL  W+ + FG + ++I+  + +++++  S  ++  
Sbjct: 270  ETWMRGT------DAGINLARTANKLLSWSKQKFGHVAKEIRMCQHQMKVLMESEPSE-D 322

Query: 1624 NYYKAXXXXXXXXXXXXXXXSFWQKKAGFNWIKEGGRNTRFFHLSTVYRRRKNKIENMKD 1803
            N                    +W +++  +WIK G +NT+FFH    +R ++N +  +++
Sbjct: 323  NIMHMRALDARMDELEKREEVYWHQRSRQDWIKSGDKNTKFFHQKASHREQRNNVRRIRN 382

Query: 1804 DVGNWHTDEKAVGANVNDYFRTIFTSDKPLPKVDLLNLFKPCI 1932
            + G W  DE  V      YF  +F S        +LN+ KP I
Sbjct: 383  EAGEWFEDEDDVTECFAHYFENLFQSGNNCEMDPILNIVKPQI 425



 Score = 42.0 bits (97), Expect(5) = 2e-35
 Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
 Frame = +1

Query: 778  KKKKMEMVRKRIKFGGQCIVPVVG----KKGRLAIFWKDGVQLDILGATSNHITGKITAY 945
            K  +ME V+K++K+     V   G    ++G LA+ W+  +++ ++  +SNHI   +   
Sbjct: 41   KSYEMESVKKKLKWEHMVAVDCEGECRKRRGGLAMLWRSEIKVQVMSMSSNHI-DIVVGE 99

Query: 946  PSHCDWFFSFVYGEPVSSRRKR 1011
             +  +W F+ +YG P    + +
Sbjct: 100  EAQGEWRFTGIYGYPEEEHKDK 121



 Score = 41.6 bits (96), Expect(5) = 2e-35
 Identities = 17/38 (44%), Positives = 26/38 (68%)
 Frame = +3

Query: 666 ITAWNCRGMGSHSAIQSLTDLIRVSQPDVICLAETMVQ 779
           I +WNCRGMGS SA+ +L  L+    P ++ L+ET ++
Sbjct: 4   ILSWNCRGMGSPSALSALRRLLASENPQIVFLSETKLK 41



 Score = 32.7 bits (73), Expect(5) = 2e-35
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 1058 PWLLFGDFNVISSPTEKIGGNGHLSRSMIEFNDMISD 1168
            PWL  GDFN++   +EK GG+G  SR    F + + +
Sbjct: 136  PWLCGGDFNLMLVASEKKGGDGFNSREADIFRNAMEE 172



 Score = 26.2 bits (56), Expect(5) = 2e-35
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 1173 GSNYTWSNHCLFGDHILERLDRALVNADW 1259
            G  +TW+N+     +I ERLDR + N  W
Sbjct: 182  GYEFTWTNNRGGDANIQERLDRFVANDLW 210


>gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
          Length = 1874

 Score =  117 bits (292), Expect(3) = 6e-34
 Identities = 69/236 (29%), Positives = 120/236 (50%), Gaps = 1/236 (0%)
 Frame = +1

Query: 1279 WFELFPHASIQNIPISSSDHLYLSINLSGTT-TNSKKPFRFFDMWTMDPTCKDTIDSAWK 1455
            W   FP A I ++   SSDH  L +    TT     K  R+ ++W  + +  + I  AW 
Sbjct: 160  WSSRFPQAVITHLTTPSSDHAPLLLEREETTLARPMKIMRYEEVWERESSLPEVIQEAWT 219

Query: 1456 EKSVGSPALNVHYKMKNTSTKLQKWNVEVFGIITQQIKKVRKELELVCSSNMNDATNYYK 1635
              +  S   +++ KMK T TKL  W+ +  G + ++IK +R++L  + +  + D  N  +
Sbjct: 220  MGADASTLGDINDKMKVTMTKLVSWSKDKIGNVRKKIKDLREKLGELRNIGLLDTDN--E 277

Query: 1636 AXXXXXXXXXXXXXXXSFWQKKAGFNWIKEGGRNTRFFHLSTVYRRRKNKIENMKDDVGN 1815
                             +W++++   W+KEG  NTR+FHL   +R +KNKI+ +K + G+
Sbjct: 278  VHSVKKELEEMLHREEIWWKQRSRITWLKEGDLNTRYFHLKASWRAKKNKIKKLKKNDGS 337

Query: 1816 WHTDEKAVGANVNDYFRTIFTSDKPLPKVDLLNLFKPCIAPRENLNLTEAPTDAEI 1983
               ++K +      +F+ ++T D  L  V+LLN+F   I+ + N +L +  TD EI
Sbjct: 338  TTMNKKEMKEISRSFFQQLYTKDDNLNPVNLLNMFHEKISEQMNADLIKPFTDEEI 393



 Score = 48.5 bits (114), Expect(3) = 6e-34
 Identities = 29/78 (37%), Positives = 39/78 (50%)
 Frame = +1

Query: 796  MVRKRIKFGGQCIVPVVGKKGRLAIFWKDGVQLDILGATSNHITGKITAYPSHCDWFFSF 975
            MV+ RI       V  VGK G LA+FW + + + +    S HI   IT     C W  +F
Sbjct: 1    MVQNRIGLRRCFTVNGVGKGGGLALFWDESMNVVLKSYNSRHIDVLITELDC-CTWRATF 59

Query: 976  VYGEPVSSRRKRVWDELR 1029
            +YGEP +  R  +W  LR
Sbjct: 60   LYGEPRAQDRHLMWSLLR 77



 Score = 27.7 bits (60), Expect(3) = 6e-34
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 1058 PWLLFGDFNVISSPTEKIGGNGHLSRSMIEFNDMISD 1168
            PWL+ GDFN     TE           M +F +++S+
Sbjct: 86   PWLMIGDFNEAMWQTEHKSHRKRSESQMRDFREVLSE 122


>gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1833

 Score =  114 bits (286), Expect(3) = 1e-33
 Identities = 68/236 (28%), Positives = 120/236 (50%), Gaps = 1/236 (0%)
 Frame = +1

Query: 1279 WFELFPHASIQNIPISSSDHLYLSINLSGTT-TNSKKPFRFFDMWTMDPTCKDTIDSAWK 1455
            W   FP A I ++   SSDH  L +    TT     K  R+ ++W  + +  + I  AW 
Sbjct: 185  WSSRFPQAVITHLTTPSSDHAPLLLEREETTLARPMKIMRYEEVWERESSLPEVIQEAWT 244

Query: 1456 EKSVGSPALNVHYKMKNTSTKLQKWNVEVFGIITQQIKKVRKELELVCSSNMNDATNYYK 1635
              +  S   +++ KMK T TKL  W+ +  G + ++IK +R++L  + +  + D  N  +
Sbjct: 245  MGADASTLGDINDKMKVTMTKLVSWSKDKIGNVRKKIKDLREKLGELRNIGLLDTDN--E 302

Query: 1636 AXXXXXXXXXXXXXXXSFWQKKAGFNWIKEGGRNTRFFHLSTVYRRRKNKIENMKDDVGN 1815
                             +W++++   W+KEG  NTR+FHL   +R +KNKI+ +K + G+
Sbjct: 303  VHSVKKELEEMLHREEIWWKQRSRITWLKEGDLNTRYFHLKASWRAKKNKIKKLKKNDGS 362

Query: 1816 WHTDEKAVGANVNDYFRTIFTSDKPLPKVDLLNLFKPCIAPRENLNLTEAPTDAEI 1983
               ++K +      +F+ ++T D  L  V+LLN+F   I+ + N +L +  T+ EI
Sbjct: 363  TTMNKKEMKEINRSFFQQLYTKDDNLNPVNLLNMFHEKISEQMNADLIKPFTNEEI 418



 Score = 49.7 bits (117), Expect(3) = 1e-33
 Identities = 30/78 (38%), Positives = 39/78 (50%)
 Frame = +1

Query: 796  MVRKRIKFGGQCIVPVVGKKGRLAIFWKDGVQLDILGATSNHITGKITAYPSHCDWFFSF 975
            MV+ RI       V  VGK G LA+FW + + + +    S HI   IT     C W  +F
Sbjct: 26   MVQNRIGLRRCFTVNGVGKGGGLALFWDESMNVVLKSYNSRHIDVLITELDC-CTWRATF 84

Query: 976  VYGEPVSSRRKRVWDELR 1029
            VYGEP +  R  +W  LR
Sbjct: 85   VYGEPRAQDRHLMWSLLR 102



 Score = 27.7 bits (60), Expect(3) = 1e-33
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 1058 PWLLFGDFNVISSPTEKIGGNGHLSRSMIEFNDMISD 1168
            PWL+ GDFN     TE           M +F +++S+
Sbjct: 111  PWLMIGDFNEAMWQTEHKSHRKRSESQMRDFREVLSE 147


>gb|AAS55787.1| hypothetical protein [Oryza sativa Japonica Group]
            gi|54291856|gb|AAV32224.1| hypothetical protein [Oryza
            sativa Japonica Group]
          Length = 1936

 Score =  103 bits (257), Expect(3) = 3e-33
 Identities = 61/242 (25%), Positives = 112/242 (46%), Gaps = 7/242 (2%)
 Frame = +1

Query: 1279 WFELFPHASIQNIPISSSDH--LYLSINLSGTTTNSKKPFRFFDMWTMDPTCKDTIDSAW 1452
            W +LFP A + ++    SDH  + L   +  TT   +K   +  +W  +P     I+ AW
Sbjct: 841  WRDLFPEAQVSHLVSPCSDHSPILLEFIVKDTTRPRQKCLHYEIVWEREPESVQVIEEAW 900

Query: 1453 KEKSVGSPALNVHYKMKNTSTKLQKWNVEVFGIITQQIKKVRKELELVCSSN-----MND 1617
                V +   +++  +    + L+ W+      + ++++K RK+LE + +SN     +  
Sbjct: 901  INAGVKTDLGDINIALGRVMSALRSWSKTKVKNVGKELEKARKKLEDLIASNAARSSIRQ 960

Query: 1618 ATNYYKAXXXXXXXXXXXXXXXSFWQKKAGFNWIKEGGRNTRFFHLSTVYRRRKNKIENM 1797
            AT++                    W +++  NW+KEG RNTRFFH   V+R +KNKI  +
Sbjct: 961  ATDHMNEMLYREEM---------LWLQRSRVNWLKEGDRNTRFFHSRAVWRAKKNKISKL 1011

Query: 1798 KDDVGNWHTDEKAVGANVNDYFRTIFTSDKPLPKVDLLNLFKPCIAPRENLNLTEAPTDA 1977
            +D+ G  H+    +     +YF+ ++ +D  L    +  LF+  +    N  L +   + 
Sbjct: 1012 RDENGAIHSTTSVLETMATEYFQGVYKADPSLNPESVTRLFQEKVTDAMNEKLCQEFKEE 1071

Query: 1978 EI 1983
            EI
Sbjct: 1072 EI 1073



 Score = 60.8 bits (146), Expect(3) = 3e-33
 Identities = 28/82 (34%), Positives = 42/82 (51%)
 Frame = +1

Query: 784  KKMEMVRKRIKFGGQCIVPVVGKKGRLAIFWKDGVQLDILGATSNHITGKITAYPSHCDW 963
            +KM  +R+++ F G   V   GK G LA++W + V +D+      +I   +   P    W
Sbjct: 677  EKMSRLRRKLAFRGFVGVSSEGKSGGLALYWDESVSVDVKDINKRYIDAYVRLSPDEPQW 736

Query: 964  FFSFVYGEPVSSRRKRVWDELR 1029
              +FVYGEP    R R+W  LR
Sbjct: 737  HITFVYGEPRVENRHRMWSLLR 758



 Score = 26.6 bits (57), Expect(3) = 3e-33
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = +2

Query: 1058 PWLLFGDFNVISSPTEKIGGNGHLSRSMIEFNDMISD 1168
            PW++ GDFN      E    N      M  F D + D
Sbjct: 767  PWMVIGDFNETLWQFEHFSKNPRCETQMQNFRDALYD 803


>gb|AAX95129.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group] gi|62733115|gb|AAX95232.1|
            retrotransposon protein, putative, unclassified [Oryza
            sativa Japonica Group]
          Length = 1324

 Score = 94.4 bits (233), Expect(5) = 1e-32
 Identities = 63/242 (26%), Positives = 113/242 (46%), Gaps = 4/242 (1%)
 Frame = +1

Query: 1270 NADWFELFPHASIQNIPISSSDHLYLSINLSGTTT----NSKKPFRFFDMWTMDPTCKDT 1437
            ++DW   FP   ++      SDH  + +  S         SK  FRF   W  +  C   
Sbjct: 650  DSDWCCRFPSFRVRKGDPRHSDHHPVIVTTSNEVIWNGGRSKPGFRFEAGWAREEHCAPI 709

Query: 1438 IDSAWKEKSVGSPALNVHYKMKNTSTKLQKWNVEVFGIITQQIKKVRKELELVCSSNMND 1617
            +++AWK  SVG     V   ++  +  L  W+    G + ++IKK ++ LE    S ++ 
Sbjct: 710  VENAWK-LSVGPRGGKVMDAIREVAANLWDWSKNFLGDLEKRIKKAKQALEAHRRSPISS 768

Query: 1618 ATNYYKAXXXXXXXXXXXXXXXSFWQKKAGFNWIKEGGRNTRFFHLSTVYRRRKNKIENM 1797
            +T   +A                +W+++A  +W+++G RNT+FFH     R+++NKI+ +
Sbjct: 769  STASREAVLKYRLDKLEEQREL-YWRQRANQHWLEKGDRNTKFFHECASERKKRNKIKKL 827

Query: 1798 KDDVGNWHTDEKAVGANVNDYFRTIFTSDKPLPKVDLLNLFKPCIAPRENLNLTEAPTDA 1977
            + D G   TDE    + ++++++ +FT+  PL   +LL      +    N  L +  T  
Sbjct: 828  RRDDGEVITDEAGSLSLISEFYKQLFTAGVPLNLDELLQNVPKRVTSTMNDELMKGVTTE 887

Query: 1978 EI 1983
            EI
Sbjct: 888  EI 889



 Score = 38.9 bits (89), Expect(5) = 1e-32
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +3

Query: 666 ITAWNCRGMGSHSAIQSLTDLIRVSQPDVICLAETMVQEKK 788
           I AWNCRG+G+   ++ L +L +   PD++ L+ T +   K
Sbjct: 450 IIAWNCRGLGNGPTVRGLLNLQKEDDPDILFLSNTKMDTNK 490



 Score = 38.5 bits (88), Expect(5) = 1e-32
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
 Frame = +1

Query: 787  KMEMVRKRIKFGGQCIVPVVGKKGRLAIFWKDGVQLDILGATSNHITGKITAYPSHCDWF 966
            K++  R ++      +    GK G LA+FWK  + L +   T + +   +        W+
Sbjct: 490  KLQCFRWKLGMPNLVVKDCQGKSGGLAVFWKKEINLRL--RTVSRLFMDVDVMEDDGFWW 547

Query: 967  -FSFVYGEPVSSRRKRVWDELRDM 1035
             F+ VYGEP S ++   W  LR +
Sbjct: 548  RFTGVYGEPRSDKKDLTWKALRTL 571



 Score = 33.5 bits (75), Expect(5) = 1e-32
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +3

Query: 1173 GSNYTWSNH-CLFGDHILERLDRALVNADW 1259
            G  +TW N+ C+   +I ERLDRA+ ++DW
Sbjct: 624  GDPFTWRNNWCVRDGYIRERLDRAVADSDW 653



 Score = 23.1 bits (48), Expect(5) = 1e-32
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +2

Query: 1061 WLLFGDFNVISSPTEKIGGNGHLSRSMIEFNDMI 1162
            WL  GDFN +    EK  G+      M  F   +
Sbjct: 579  WLCVGDFNEVLFSWEKERGHAKAQSCMDRFRQTL 612