BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00017130
         (1653 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270990.1| PREDICTED: pentatricopeptide repeat-containi...   597   e-168
gb|EEC78508.1| hypothetical protein OsI_18438 [Oryza sativa Indi...   571   e-160
ref|NP_001054633.1| Os05g0145600 [Oryza sativa Japonica Group] g...   568   e-159
ref|XP_002440585.1| hypothetical protein SORBIDRAFT_09g003510 [S...   564   e-158
ref|XP_003568951.1| PREDICTED: pentatricopeptide repeat-containi...   563   e-158

>ref|XP_002270990.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35850,
            mitochondrial [Vitis vinifera]
            gi|296087577|emb|CBI34833.3| unnamed protein product
            [Vitis vinifera]
          Length = 445

 Score =  597 bits (1540), Expect = e-168
 Identities = 297/443 (67%), Positives = 361/443 (81%), Gaps = 1/443 (0%)
 Frame = -2

Query: 1610 LKKSIHLALSGHCQTLKRVLVTNRAFSSATAPTEEEYARRNYARNLPEYNTVISSLTFQR 1431
            +KK + +     C  L R L   R F+++T    EEYA+RNYA N+ EY TV+SSLT QR
Sbjct: 1    MKKLLQIVAGQRCSPLLRAL-GRRYFAAST----EEYAKRNYASNVSEYTTVVSSLTAQR 55

Query: 1430 KNFLLRDAYEDMVLDGVKPDIDTFHSLLVGTMKGARLQDAFFFRDEMKAMGLFPDVPSYN 1251
            ++FLLRDAY+DM+LDGV+P  D FHSL+VGTMKGARLQD+FFF D+MK MGL PDV  YN
Sbjct: 56   RHFLLRDAYDDMMLDGVQPSRDIFHSLIVGTMKGARLQDSFFFIDQMKTMGLVPDVALYN 115

Query: 1250 FLISTCGKCKHSDAAIQILEEMKNNGVKPNGQTYICLLNACAATGRIDQVYAIVRDMTAA 1071
            FL+STCGKCK+SD AI ILEEMK N VKP GQTYICLLNACAA+GR D+VYAIVRDMTAA
Sbjct: 116  FLVSTCGKCKNSDQAIHILEEMKKNEVKPTGQTYICLLNACAASGRTDRVYAIVRDMTAA 175

Query: 1070 GLGLNKFCYAGLVAAHVNRTPRTEETLTKIIDLVEQSKGWSSVEGANDTAENVMIGVSEE 891
            GLGLNKFCYAGL+AAH N+ P T++T +KII+LVEQSKGWSS+E   D AENVM+GVSEE
Sbjct: 176  GLGLNKFCYAGLIAAHKNKIPLTDDTASKIIELVEQSKGWSSIEATRDMAENVMMGVSEE 235

Query: 890  ELYNVPTAEFVHRRGGFVFRDLTVYHVALLACADLQSIETMERLLDMLAKDRKTPDIFIV 711
            ELYN+PTAE+VHRR GF+ R LTVYHVAL A ADL+++E ME LL+ML K+ KTPD+F++
Sbjct: 236  ELYNIPTAEYVHRRAGFLNRQLTVYHVALHAFADLRNVEAMETLLEMLKKEGKTPDVFLI 295

Query: 710  MQTMRCYLCCGDLERGLKTFEDYI-SERPPVVELYVTLMEGAMVGHTERGMQIALDTLEK 534
            MQTMRCYL  G+++RGL+ FE+Y+ S +P +VELYVTL+EGAMVG+T +GM++A DTL K
Sbjct: 296  MQTMRCYLHSGNIDRGLQIFEEYMNSGKPAMVELYVTLVEGAMVGYTPKGMELAQDTLVK 355

Query: 533  MTSRGFFLNYKMGSDLLLAASGEKGGGYTTANYIWDLMQERKLNLSLPALQAYHKGLMER 354
            M +RGFFL+ +MGS+LLL ASGEK GGYTTANYIWDLMQ RK+  S PA++AY+ GL ER
Sbjct: 356  MNARGFFLSPRMGSELLLVASGEKTGGYTTANYIWDLMQARKITPSFPAVEAYYNGLRER 415

Query: 353  DIAKDDPRLLHVSSKLDGARTRF 285
            +I +DD RL+ VS   D  R RF
Sbjct: 416  EIPEDDARLVLVSRAYDNQRLRF 438


>gb|EEC78508.1| hypothetical protein OsI_18438 [Oryza sativa Indica Group]
          Length = 454

 Score =  571 bits (1471), Expect = e-160
 Identities = 279/413 (67%), Positives = 340/413 (82%), Gaps = 1/413 (0%)
 Frame = -2

Query: 1520 APTEEEYARRNYARNLPEYNTVISSLTFQRKNFLLRDAYEDMVLDGVKPDIDTFHSLLVG 1341
            A + EEY RRNYA+N+ EYNTV  SLT QR+++LLRDAY+DM+LDGV+P  DTFH+L+VG
Sbjct: 33   ATSTEEYNRRNYAKNISEYNTVFGSLTAQRRHYLLRDAYDDMMLDGVQPVRDTFHNLIVG 92

Query: 1340 TMKGARLQDAFFFRDEMKAMGLFPDVPSYNFLISTCGKCKHSDAAIQILEEMKNNGVKPN 1161
             MKG+RLQDAF+FRD+MK MGL PDV  YNFLISTCGK K+SDAAI +LEEMK +GVK  
Sbjct: 93   AMKGSRLQDAFYFRDQMKEMGLQPDVNLYNFLISTCGKSKNSDAAIMLLEEMKAHGVKLK 152

Query: 1160 GQTYICLLNACAATGRIDQVYAIVRDMTAAGLGLNKFCYAGLVAAHVNRTPRTEETLTKI 981
            G+TY+CLLNA AATGR DQVYAIVRDMTAAGLGLNKFCYAGL+ A  N+ P TEET+TKI
Sbjct: 153  GETYVCLLNALAATGRTDQVYAIVRDMTAAGLGLNKFCYAGLITAFKNKAPTTEETMTKI 212

Query: 980  IDLVEQSKGWSSVEG-ANDTAENVMIGVSEEELYNVPTAEFVHRRGGFVFRDLTVYHVAL 804
            ++ V+QSKGW +VE  + D++EN+M+ VSEEELYN+PTAE+VHR+  FV++ +T+YHVA+
Sbjct: 213  VEFVQQSKGWKNVERVSKDSSENIMMNVSEEELYNLPTAEYVHRQ-AFVYKQMTIYHVAI 271

Query: 803  LACADLQSIETMERLLDMLAKDRKTPDIFIVMQTMRCYLCCGDLERGLKTFEDYISERPP 624
             ACADL+S ET+E LLDML KD  T D FI MQ MRCYL CGD++  +K FE+Y S + P
Sbjct: 272  HACADLKSKETLEVLLDMLIKDGFTYDAFIAMQAMRCYLQCGDIDSAVKIFEEYTSSKSP 331

Query: 623  VVELYVTLMEGAMVGHTERGMQIALDTLEKMTSRGFFLNYKMGSDLLLAASGEKGGGYTT 444
              ELYVTL EGAM+GHT RGMQ+A +T+EKMTSR FFLN +MG+DLLLAASGEK GGYT 
Sbjct: 332  PAELYVTLAEGAMIGHTPRGMQLAQETIEKMTSRNFFLNARMGTDLLLAASGEKTGGYTI 391

Query: 443  ANYIWDLMQERKLNLSLPALQAYHKGLMERDIAKDDPRLLHVSSKLDGARTRF 285
            ANY+WDLMQ R++  SLPA++AY+KGL ER+I  DDPRL++VS  LD    RF
Sbjct: 392  ANYVWDLMQNRRITPSLPAVEAYYKGLKEREIPSDDPRLMNVSRVLDNLSIRF 444


>ref|NP_001054633.1| Os05g0145600 [Oryza sativa Japonica Group] gi|51038158|gb|AAT93961.1|
            unknow protein [Oryza sativa Japonica Group]
            gi|51038198|gb|AAT94001.1| unkonw protein [Oryza sativa
            Japonica Group] gi|113578184|dbj|BAF16547.1| Os05g0145600
            [Oryza sativa Japonica Group]
            gi|215686674|dbj|BAG88927.1| unnamed protein product
            [Oryza sativa Japonica Group] gi|222630177|gb|EEE62309.1|
            hypothetical protein OsJ_17098 [Oryza sativa Japonica
            Group]
          Length = 454

 Score =  568 bits (1465), Expect = e-159
 Identities = 279/413 (67%), Positives = 338/413 (81%), Gaps = 1/413 (0%)
 Frame = -2

Query: 1520 APTEEEYARRNYARNLPEYNTVISSLTFQRKNFLLRDAYEDMVLDGVKPDIDTFHSLLVG 1341
            A + EEY RRNYA N+ EYNTV  SLT QR+++LLRDAY+DM+LDGV+P  DTFH+L+VG
Sbjct: 33   ATSTEEYNRRNYANNISEYNTVFGSLTAQRRHYLLRDAYDDMMLDGVQPVRDTFHNLIVG 92

Query: 1340 TMKGARLQDAFFFRDEMKAMGLFPDVPSYNFLISTCGKCKHSDAAIQILEEMKNNGVKPN 1161
             MKG+RLQDAF+FRD+MK MGL PDV  YNFLISTCGK K+SDAAI +LEEMK +GVK  
Sbjct: 93   AMKGSRLQDAFYFRDQMKEMGLQPDVNLYNFLISTCGKSKNSDAAIMLLEEMKAHGVKLK 152

Query: 1160 GQTYICLLNACAATGRIDQVYAIVRDMTAAGLGLNKFCYAGLVAAHVNRTPRTEETLTKI 981
            G+TY CLLNA AATGR DQVYAIVRDMTAAGLGLNKFCYAGL+ A  N+ P TEET+TKI
Sbjct: 153  GETYTCLLNALAATGRTDQVYAIVRDMTAAGLGLNKFCYAGLITAFKNKAPTTEETMTKI 212

Query: 980  IDLVEQSKGWSSVEG-ANDTAENVMIGVSEEELYNVPTAEFVHRRGGFVFRDLTVYHVAL 804
            ++ V+QSKGW +VE  + D++EN+M+ VSEEELYN+PTAE+VHR+  FV++ +T+YHVA+
Sbjct: 213  VEFVQQSKGWKNVERVSKDSSENIMMNVSEEELYNLPTAEYVHRQ-AFVYKQMTIYHVAI 271

Query: 803  LACADLQSIETMERLLDMLAKDRKTPDIFIVMQTMRCYLCCGDLERGLKTFEDYISERPP 624
             ACADL+S ET+E LLDML KD  T D FI MQ MRCYL CGD++  +K FE+Y S + P
Sbjct: 272  HACADLKSKETLEVLLDMLIKDGFTYDAFIAMQAMRCYLQCGDIDSAVKIFEEYTSSKSP 331

Query: 623  VVELYVTLMEGAMVGHTERGMQIALDTLEKMTSRGFFLNYKMGSDLLLAASGEKGGGYTT 444
              ELYVTL EGAM+GHT RGMQ+A +T+EKMTSR FFLN +MG+DLLLAASGEK GGYT 
Sbjct: 332  PAELYVTLAEGAMIGHTPRGMQLAQETIEKMTSRNFFLNARMGTDLLLAASGEKTGGYTI 391

Query: 443  ANYIWDLMQERKLNLSLPALQAYHKGLMERDIAKDDPRLLHVSSKLDGARTRF 285
            ANY+WDLMQ R++  SLPA++AY+KGL ER+I  DDPRL++VS  LD    RF
Sbjct: 392  ANYVWDLMQNRRITPSLPAVEAYYKGLKEREIPSDDPRLMNVSRVLDNLSIRF 444


>ref|XP_002440585.1| hypothetical protein SORBIDRAFT_09g003510 [Sorghum bicolor]
            gi|241945870|gb|EES19015.1| hypothetical protein
            SORBIDRAFT_09g003510 [Sorghum bicolor]
          Length = 452

 Score =  564 bits (1453), Expect = e-158
 Identities = 287/447 (64%), Positives = 347/447 (77%), Gaps = 4/447 (0%)
 Frame = -2

Query: 1613 MLKKSIHLALSGHCQTLKRVLVTNRAFSSATAPTEEEYARRNYARNLPEYNTVISSLTFQ 1434
            +LK S  L L G  +      +      +ATA   EEYARRNYA N  EYNTVI SL  Q
Sbjct: 3    LLKNS--LVLQGRLRHAAAAALFTARRGAATAT--EEYARRNYADNTSEYNTVIGSLVAQ 58

Query: 1433 RKNFLLRDAYEDMVLDGVKPDIDTFHSLLVGTMKGARLQDAFFFRDEMKAMGLFPDVPSY 1254
            R+ +LLRDAY+DM+LDGVKP+ DTFH+L+VGTMKG+RLQDA +FRD+MK MGL PDV  Y
Sbjct: 59   RRPYLLRDAYDDMMLDGVKPERDTFHTLIVGTMKGSRLQDALYFRDQMKEMGLQPDVNLY 118

Query: 1253 NFLISTCGKCKHSDAAIQILEEMKNNGVKPNGQTYICLLNACAATGRIDQVYAIVRDMTA 1074
            NFLISTCGKCK+SDAAI +LEEMK +GVK  G+TYICLLNA A+TG+ DQVYAIV DM+A
Sbjct: 119  NFLISTCGKCKNSDAAIMLLEEMKAHGVKLKGETYICLLNALASTGQTDQVYAIVSDMSA 178

Query: 1073 AGLGLNKFCYAGLVAAHVNRTPRTEETLTKIIDLVEQSKGWSSVE-GANDTAENVMIGVS 897
            AGLGLNKFCYAGL+ A  N+TP TEET+ KI+D V QSKGW  VE  A D+AEN+M+ VS
Sbjct: 179  AGLGLNKFCYAGLITAFKNKTPTTEETMAKILDFVGQSKGWQYVERAAKDSAENIMMNVS 238

Query: 896  EEELYNVPTAEFVHRRGGFVFRDLTVYHVALLACADLQSIETMERLLDMLAKDRK---TP 726
            EEELYN+PTAE+V+RRGGFVF+  TVYHVA+ ACA+L+S ET+E LL+M  KD +   T 
Sbjct: 239  EEELYNLPTAEYVNRRGGFVFKQHTVYHVAIHACAELRSKETLEALLEMFNKDNRDGSTY 298

Query: 725  DIFIVMQTMRCYLCCGDLERGLKTFEDYISERPPVVELYVTLMEGAMVGHTERGMQIALD 546
            D ++VMQ MRCYL CGD +  +K FE+Y+S R P VELY TL EGAM+G+T RGMQ+A +
Sbjct: 299  DAYMVMQAMRCYLRCGDFDSAVKMFEEYLSSRSPPVELYATLAEGAMIGYTPRGMQLAQE 358

Query: 545  TLEKMTSRGFFLNYKMGSDLLLAASGEKGGGYTTANYIWDLMQERKLNLSLPALQAYHKG 366
            T+EKM SR FFLN ++GSDLLLAA+GE  GGYTTANY+WDL+Q R +   L A++AYHKG
Sbjct: 359  TIEKMVSRNFFLNARLGSDLLLAAAGETTGGYTTANYVWDLLQSRNVTPYLTAVEAYHKG 418

Query: 365  LMERDIAKDDPRLLHVSSKLDGARTRF 285
            LM R+I  DDPRLL+VS  LD  + RF
Sbjct: 419  LMAREIPSDDPRLLNVSRVLDNLQLRF 445


>ref|XP_003568951.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35850,
            mitochondrial-like [Brachypodium distachyon]
          Length = 452

 Score =  563 bits (1450), Expect = e-158
 Identities = 280/417 (67%), Positives = 339/417 (81%), Gaps = 5/417 (1%)
 Frame = -2

Query: 1520 APTEEEYARRNYARNLPEYNTVISSLTFQRKN----FLLRDAYEDMVLDGVKPDIDTFHS 1353
            A + EEY RRNYA N+ EYNTVI SL  QR++    +LLRDAY+DM+LDGV+P  DTFH+
Sbjct: 30   ATSTEEYMRRNYANNVSEYNTVIGSLVQQRRHVSGPYLLRDAYDDMILDGVQPVRDTFHN 89

Query: 1352 LLVGTMKGARLQDAFFFRDEMKAMGLFPDVPSYNFLISTCGKCKHSDAAIQILEEMKNNG 1173
            L+VGTMKG+R+QDAF+FRD+M+ MGL PDV  YNFLISTCGKC++SDAAI +LEEMK +G
Sbjct: 90   LIVGTMKGSRMQDAFYFRDQMREMGLQPDVNLYNFLISTCGKCQNSDAAILLLEEMKAHG 149

Query: 1172 VKPNGQTYICLLNACAATGRIDQVYAIVRDMTAAGLGLNKFCYAGLVAAHVNRTPRTEET 993
            VK  G+TYICLLNA AATGR DQVYAIVRDMTAAGLGLNKFCYAGL+ A  N+TP +E+T
Sbjct: 150  VKLKGETYICLLNALAATGRTDQVYAIVRDMTAAGLGLNKFCYAGLITAFKNKTPTSEDT 209

Query: 992  LTKIIDLVEQSKGWSSVEG-ANDTAENVMIGVSEEELYNVPTAEFVHRRGGFVFRDLTVY 816
              KI++ V+QSKGW  VE  AND+AEN+M+ VSEEELYN+PTAE+ HRR GF+F+ LT+Y
Sbjct: 210  TAKILEFVQQSKGWQYVERVANDSAENIMMNVSEEELYNLPTAEYAHRR-GFIFKQLTIY 268

Query: 815  HVALLACADLQSIETMERLLDMLAKDRKTPDIFIVMQTMRCYLCCGDLERGLKTFEDYIS 636
            HVA+ ACADL+S ET+E LLDML KD  T D FIVM  +RCYL CGD++  +K FE++ S
Sbjct: 269  HVAVHACADLRSKETLEALLDMLTKDGFTNDAFIVMHAVRCYLRCGDIDSAVKMFEEFSS 328

Query: 635  ERPPVVELYVTLMEGAMVGHTERGMQIALDTLEKMTSRGFFLNYKMGSDLLLAASGEKGG 456
             +P   ELYV L EGAM+G+T RGMQ+A +TLEKMT R  FLN KMG+DLLLAASGEK G
Sbjct: 329  SKPTPAELYVKLAEGAMIGYTPRGMQLAQETLEKMTKRNLFLNPKMGTDLLLAASGEKTG 388

Query: 455  GYTTANYIWDLMQERKLNLSLPALQAYHKGLMERDIAKDDPRLLHVSSKLDGARTRF 285
            GYTTANYIWDL+Q RK+  +LPA++AYHKGL ER+I  DDPRLL+V+  LD  + RF
Sbjct: 389  GYTTANYIWDLLQARKIIPALPAVEAYHKGLKEREIPSDDPRLLNVAHTLDNLQLRF 445