BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00017043
         (872 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containi...   156   5e-36
ref|XP_002320827.1| predicted protein [Populus trichocarpa] gi|2...   135   1e-29
ref|XP_002511922.1| pentatricopeptide repeat-containing protein,...   130   4e-28
ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containi...   117   3e-24
ref|XP_002878387.1| pentatricopeptide repeat-containing protein ...   112   8e-23

>ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
           gi|297745328|emb|CBI40408.3| unnamed protein product
           [Vitis vinifera]
          Length = 765

 Score =  156 bits (395), Expect = 5e-36
 Identities = 88/188 (46%), Positives = 122/188 (64%), Gaps = 1/188 (0%)
 Frame = -2

Query: 562 SVFELAITEQDNI-LLLKLVQKSKTHNISLSSYTVTVLIRHFGRARMIDKAISVFNEAGP 386
           +VFE A  E ++   LL L + SK+H I LS    T+LIR FGRA+M+D++  V+NE  P
Sbjct: 128 AVFEHASREPNSHNKLLDLFKTSKSHKIPLSVNAATLLIRCFGRAQMVDESFLVYNELCP 187

Query: 385 LVRNTHLCNTFLHLLLKAGRGVDGRKVLDEMLGKGSTFPPNDLTGFMFFDGLARRGKSVL 206
             R TH+ N  + +L + GR  D   +LDEML   + FPPN  TG + F  L++R K   
Sbjct: 188 SRRLTHIRNILIDVLFRKGRVDDALHLLDEMLQPKAEFPPNSNTGHIVFSALSKRDKVGR 247

Query: 205 AVKWEEVIGLVTKFGEHGVFPDALVLHKLITRLGRSGSVEHAWDLVHVLMKMSAPLEASC 26
           AV  EE++GLV+KF EH VFP+++ L +LI+RL RSG  + AWD++H LMK+   +EA+ 
Sbjct: 248 AVDEEEIVGLVSKFAEHEVFPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAAS 307

Query: 25  FNALLTGL 2
            NALLT L
Sbjct: 308 CNALLTAL 315


>ref|XP_002320827.1| predicted protein [Populus trichocarpa] gi|222861600|gb|EEE99142.1|
           predicted protein [Populus trichocarpa]
          Length = 775

 Score =  135 bits (340), Expect = 1e-29
 Identities = 84/231 (36%), Positives = 129/231 (55%), Gaps = 3/231 (1%)
 Frame = -2

Query: 685 SETELHLLKLLQSQTTENNNYTSKLIKIFQPKKDDNDNINNSVFELAITEQD-NILLLKL 509
           S   L  L  LQ+ +  + +  S L   FQ           ++FELA  E D N  L +L
Sbjct: 96  SSQALKFLNYLQNNSPSSPDTQSLLSYTFQ-----------AIFELAFCEPDSNANLSRL 144

Query: 508 VQKSKTHNISLSSYTVTVLIRHFGRARMIDKAISVFNEAGPLVRNTHLCNTFLHLLLKAG 329
            + SK  NI L+    + L+R  GR+ ++++++ +FN+  P V+NT+L N +L +LL++G
Sbjct: 145 YKTSKELNIPLTVNAASFLLRASGRSELVEESLILFNDLDPSVKNTYLRNVWLSILLRSG 204

Query: 328 RGVDGRKVLDEMLGKG--STFPPNDLTGFMFFDGLARRGKSVLAVKWEEVIGLVTKFGEH 155
           R  D  KV+DEM      S   PND TG + F  L +R ++   +  +E++ LV KFGEH
Sbjct: 205 RVKDALKVIDEMFESNDDSNCRPNDATGDILFSFLLKRERNEELLSEDEIVNLVLKFGEH 264

Query: 154 GVFPDALVLHKLITRLGRSGSVEHAWDLVHVLMKMSAPLEASCFNALLTGL 2
           GV   +  + +LITRL R+      WDL   ++K+ A LE++  N+LLTGL
Sbjct: 265 GVLISSFWMGRLITRLCRNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGL 315


>ref|XP_002511922.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223549102|gb|EEF50591.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 346

 Score =  130 bits (327), Expect = 4e-28
 Identities = 90/231 (38%), Positives = 132/231 (57%), Gaps = 3/231 (1%)
 Frame = -2

Query: 685 SETELHLLKLLQSQTTENNNYTSKLIKIFQPKKDDNDNINNSVFELAITEQDNIL-LLKL 509
           S   L  LK LQ+    +N  T  L   FQ           ++FELA  E D+   L +L
Sbjct: 105 SSQALKFLKYLQNNFPTSN--TQHLSSTFQ-----------AIFELASRENDSRTNLYEL 151

Query: 508 VQKSKTHNISLSSYTVTVLIRHFGRARMIDKAISVFNEAGPLVRNTHLCNTFLHLLLKAG 329
            + SK  NI L+  + T+L+R FGR  +++K+  +FNE    ++NTH+ N  + LLL+ G
Sbjct: 152 YKVSKEWNIPLTINSATLLLRFFGRIGLVEKSFILFNELEHCIKNTHVRNLMVDLLLRDG 211

Query: 328 RGVDGRKVLDEMLGKGSTFP--PNDLTGFMFFDGLARRGKSVLAVKWEEVIGLVTKFGEH 155
           R  D  KVLDEML  GS F   P+D+TG + F  L +R K    V  EE++ +V K G+ 
Sbjct: 212 RVDDAFKVLDEMLQPGSEFDLRPDDVTGDIIFTWLMKREK---LVSPEEIVEVVLKLGKF 268

Query: 154 GVFPDALVLHKLITRLGRSGSVEHAWDLVHVLMKMSAPLEASCFNALLTGL 2
            VFP+++ L + I +L R+G+   A+DL+  LM + A ++A+  NALLTGL
Sbjct: 269 DVFPNSIRLTQTIGQLCRTGNTSKAYDLLIELMTLGAAIKAAPCNALLTGL 319


>ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
           gi|449475521|ref|XP_004154479.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
          Length = 660

 Score =  117 bits (294), Expect = 3e-24
 Identities = 67/162 (41%), Positives = 103/162 (63%), Gaps = 1/162 (0%)
 Frame = -2

Query: 484 ISLSSYTVTV-LIRHFGRARMIDKAISVFNEAGPLVRNTHLCNTFLHLLLKAGRGVDGRK 308
           +SLS+   +V L+R  GR  M+D+A++ F+      +NT++ N  ++LLLK+GR  +   
Sbjct: 1   MSLSTAQSSVHLLRRLGRIGMVDEALAAFSTLDSHAKNTNVRNEIINLLLKSGRVDNAMN 60

Query: 307 VLDEMLGKGSTFPPNDLTGFMFFDGLARRGKSVLAVKWEEVIGLVTKFGEHGVFPDALVL 128
           VLDEML   S F PND T  + F+ L +       VK +E+ GLV+KFG+H +FPD + L
Sbjct: 61  VLDEMLLPESEFRPNDKTAGIVFNNLLKIDGLEGRVKEDEIAGLVSKFGKHNIFPDTIAL 120

Query: 127 HKLITRLGRSGSVEHAWDLVHVLMKMSAPLEASCFNALLTGL 2
            +LI++L RSG+   AW+++  LM ++   +A+  NALLTGL
Sbjct: 121 TQLISKLCRSGNTNLAWNILDNLMMLNGLKDAAPCNALLTGL 162


>ref|XP_002878387.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297324225|gb|EFH54646.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 766

 Score =  112 bits (281), Expect = 8e-23
 Identities = 73/188 (38%), Positives = 110/188 (58%), Gaps = 1/188 (0%)
 Frame = -2

Query: 562 SVFELAITEQDNI-LLLKLVQKSKTHNISLSSYTVTVLIRHFGRARMIDKAISVFNEAGP 386
           SV E A +E D+   LL+L + +K  NI L+     +LIR FGR  M ++++ V+     
Sbjct: 121 SVIEFAGSEPDSRDKLLRLYEIAKEKNIPLTVVATKLLIRWFGRMGMANQSVLVYERLDS 180

Query: 385 LVRNTHLCNTFLHLLLKAGRGVDGRKVLDEMLGKGSTFPPNDLTGFMFFDGLARRGKSVL 206
            ++N+ + N  + +LL+ G   D  KVLDEML K S FPPN +T  +    L    K  L
Sbjct: 181 NMKNSQVRNVVIDVLLRNGLVDDAFKVLDEMLQKESVFPPNRITADIV---LHEVWKGRL 237

Query: 205 AVKWEEVIGLVTKFGEHGVFPDALVLHKLITRLGRSGSVEHAWDLVHVLMKMSAPLEASC 26
             + E++IGL+++F  HGV P+++ L + I+ L ++     AWD++  LMK  APLEA  
Sbjct: 238 LTE-EKIIGLISRFSSHGVSPNSVWLTRFISSLCKNARTNAAWDILSDLMKNKAPLEAPP 296

Query: 25  FNALLTGL 2
           FNALL+ L
Sbjct: 297 FNALLSCL 304