BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00017016
         (1224 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003531533.1| PREDICTED: pentatricopeptide repeat-containi...   399   e-109
ref|XP_002522615.1| pentatricopeptide repeat-containing protein,...   399   e-108
ref|XP_003545705.1| PREDICTED: pentatricopeptide repeat-containi...   397   e-108
ref|XP_002323959.1| predicted protein [Populus trichocarpa] gi|2...   394   e-107
ref|XP_002268952.2| PREDICTED: pentatricopeptide repeat-containi...   388   e-105

>ref|XP_003531533.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
            mitochondrial-like [Glycine max]
          Length = 395

 Score =  399 bits (1026), Expect = e-109
 Identities = 192/297 (64%), Positives = 239/297 (80%)
 Frame = -1

Query: 1224 YKHALEISEWMIRNQDFELSDSDYGVRIDLMTKVFGIDAAERYFEGLPLEVKTGETYTSL 1045
            YKHALEISEWM+ ++++ELSDSDY  RIDL TKVFGIDAAERYFEGLPL  KT ETYT+L
Sbjct: 93   YKHALEISEWMVSHEEYELSDSDYAARIDLTTKVFGIDAAERYFEGLPLATKTAETYTAL 152

Query: 1044 LHSYAGAKTTERAENFFQRVKEENVSLNAMMYNEMMTLYMSVGQLEKVPSVIEDMKRRKV 865
            LHSYAGAK T++AE  +QR+K+ N+S +A+ YNEMMTLYMSVGQ EKVPSV+E++K++KV
Sbjct: 153  LHSYAGAKLTKKAEELYQRIKDSNLSFDALTYNEMMTLYMSVGQFEKVPSVVEELKQQKV 212

Query: 864  SPDLFTYNLWISACAANLDIDSVKSILDEMSCDPNSDGGWEIYRQLTSIYINAGNLVNSD 685
            SPD+FTYNLWIS CAA L+ID V+ ILDEMS    S+  W  Y  L +IYI+ G+L N+ 
Sbjct: 213  SPDIFTYNLWISYCAAILNIDEVRRILDEMSHGAGSNESWIRYLNLANIYISVGHLDNAS 272

Query: 684  GTSVVETERKITQRESITYDFLIILYTGLKNKEKINQIWKSLRMAPMKMTSRNYICVISS 505
              ++VETE++ITQR+ ITYDFLIILY GL +K+K++QIW SLRM   KM SRNYIC+ISS
Sbjct: 273  SNTLVETEKRITQRQWITYDFLIILYGGLGSKDKLDQIWNSLRMTKQKMISRNYICIISS 332

Query: 504  YLMLGYFKEVDEVFEQWKQSTTTDFDSYACSRLLSAVAGTGLVDKADGLRALMIQKN 334
            YLMLG+ KEV EV +QWKQSTTTDFD  AC +++ A    GL + A+ L  ++I+KN
Sbjct: 333  YLMLGHTKEVGEVIDQWKQSTTTDFDMLACKKIMVAFRDMGLAEIANNLNMILIEKN 389


>ref|XP_002522615.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223538091|gb|EEF39702.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 426

 Score =  399 bits (1024), Expect = e-108
 Identities = 187/300 (62%), Positives = 240/300 (80%)
 Frame = -1

Query: 1224 YKHALEISEWMIRNQDFELSDSDYGVRIDLMTKVFGIDAAERYFEGLPLEVKTGETYTSL 1045
            YKHALEISEWM+ N++FEL D DY  RIDLMTKVFGIDAAERYFEGLP+ VKT ETYT+L
Sbjct: 122  YKHALEISEWMVTNKEFELMDFDYATRIDLMTKVFGIDAAERYFEGLPITVKTSETYTAL 181

Query: 1044 LHSYAGAKTTERAENFFQRVKEENVSLNAMMYNEMMTLYMSVGQLEKVPSVIEDMKRRKV 865
            LHSYAG K   +AE  ++R+K  N+S  A+ YNEMMTLYMSVGQ+EKV  V+E++KR+K+
Sbjct: 182  LHSYAGVKQLGKAEELYERIKGSNLSFTALTYNEMMTLYMSVGQVEKVSLVVEELKRQKI 241

Query: 864  SPDLFTYNLWISACAANLDIDSVKSILDEMSCDPNSDGGWEIYRQLTSIYINAGNLVNSD 685
            +PD+FTYNLWIS+CAA L+ID V  ILDEM  D   +  W  Y  + +IY+ AG+LVN++
Sbjct: 242  APDIFTYNLWISSCAAILNIDQVTRILDEMKHDSGCNDDWLRYIDIANIYVKAGHLVNTE 301

Query: 684  GTSVVETERKITQRESITYDFLIILYTGLKNKEKINQIWKSLRMAPMKMTSRNYICVISS 505
             ++VVE E+ ITQRE ITYDFLIILY GL++K+K++QIWKSLRM   KMT+RN++C++SS
Sbjct: 302  SSAVVEAEKSITQREWITYDFLIILYAGLRDKDKVDQIWKSLRMTKQKMTNRNFVCILSS 361

Query: 504  YLMLGYFKEVDEVFEQWKQSTTTDFDSYACSRLLSAVAGTGLVDKADGLRALMIQKNYNP 325
            Y+MLG+ KE  EV +QWK+STTTDFD  ACSRLL A +G+GL + A+    L+I++N +P
Sbjct: 362  YMMLGHLKEAGEVLDQWKKSTTTDFDLSACSRLLDAFSGSGLTEIANDFHMLLIERNCDP 421


>ref|XP_003545705.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
            mitochondrial-like [Glycine max]
          Length = 399

 Score =  397 bits (1020), Expect = e-108
 Identities = 192/297 (64%), Positives = 238/297 (80%)
 Frame = -1

Query: 1224 YKHALEISEWMIRNQDFELSDSDYGVRIDLMTKVFGIDAAERYFEGLPLEVKTGETYTSL 1045
            YKHALEISEWM+ N+++ELSDSDY VRIDLMT+VFGIDAAERYFEGLPL  KT ETYT+L
Sbjct: 97   YKHALEISEWMVSNEEYELSDSDYAVRIDLMTQVFGIDAAERYFEGLPLATKTTETYTAL 156

Query: 1044 LHSYAGAKTTERAENFFQRVKEENVSLNAMMYNEMMTLYMSVGQLEKVPSVIEDMKRRKV 865
            LHSYAGAK TE+AE  +QR+K+ N+S +A+ YNEMMTLYMSVGQ EKVP V+E++K++KV
Sbjct: 157  LHSYAGAKLTEKAEELYQRIKDSNLSFDALTYNEMMTLYMSVGQFEKVPIVVEELKQQKV 216

Query: 864  SPDLFTYNLWISACAANLDIDSVKSILDEMSCDPNSDGGWEIYRQLTSIYINAGNLVNSD 685
            SPD+FTYNLWIS+CAA L+ID V+ ILDEMS    S+  W  Y  L +IYI+  +L N+ 
Sbjct: 217  SPDIFTYNLWISSCAAILNIDEVRRILDEMSHGAGSNESWIRYLNLANIYISVAHLDNAS 276

Query: 684  GTSVVETERKITQRESITYDFLIILYTGLKNKEKINQIWKSLRMAPMKMTSRNYICVISS 505
              ++VETE++ITQR+ ITYDFLIILY GL +K+K++QIW SL M   KM SRNY+C+ISS
Sbjct: 277  SNTLVETEKRITQRQWITYDFLIILYGGLGSKDKLDQIWNSLGMTKQKMISRNYMCIISS 336

Query: 504  YLMLGYFKEVDEVFEQWKQSTTTDFDSYACSRLLSAVAGTGLVDKADGLRALMIQKN 334
            YLMLG  KEV EV +QWKQSTTTDFD  AC ++L A    GL + A+ L  ++I+KN
Sbjct: 337  YLMLGLTKEVGEVIDQWKQSTTTDFDMLACKKILVAFRDIGLAEIANNLNVILIEKN 393


>ref|XP_002323959.1| predicted protein [Populus trichocarpa] gi|222866961|gb|EEF04092.1|
            predicted protein [Populus trichocarpa]
          Length = 355

 Score =  394 bits (1012), Expect = e-107
 Identities = 188/299 (62%), Positives = 242/299 (80%), Gaps = 2/299 (0%)
 Frame = -1

Query: 1224 YKHALEISEWMIRNQDFELSDSDYGVRIDLMTKVFGIDAAERYFEGLPLEVKTGETYTSL 1045
            +KHALEISEWM+ +++FELSD+D+  RIDLMTKVFG+DAAERYF+GLPL  KT ETYT+L
Sbjct: 56   FKHALEISEWMVAHEEFELSDTDHASRIDLMTKVFGVDAAERYFDGLPLAAKTTETYTAL 115

Query: 1044 LHSYAGAKTTERAENFFQRVKEENVSLNAMMYNEMMTLYMSVGQLEKVPSVIEDMKRRKV 865
            LHSYA AK  E+AE F++R+K  N+   A+MYNEMMTLYMSVGQLEKV  V+E++K +KV
Sbjct: 116  LHSYAAAKLIEKAEEFYKRIKGSNLPFTALMYNEMMTLYMSVGQLEKVSQVVEELKHQKV 175

Query: 864  SPDLFTYNLWISACAANLDIDSVKSILDEMSCDPNSDGGWEIYRQLTSIYINAGNLVNSD 685
            +PD+FTYNLWIS+CAA L+ID V+ ILDEMS D   +  W  Y ++ +IY+ AG+LVN++
Sbjct: 176  APDIFTYNLWISSCAAALNIDKVRRILDEMSQDSGVNDDWMRYIKIVNIYVTAGHLVNAE 235

Query: 684  GT--SVVETERKITQRESITYDFLIILYTGLKNKEKINQIWKSLRMAPMKMTSRNYICVI 511
             +  +VVE E+KITQRE ITYDFL+ILY GL  K+KI+QIWKSLRM   KMTSRN++C++
Sbjct: 236  SSTAAVVEAEKKITQREWITYDFLVILYAGLGKKDKIDQIWKSLRMTNQKMTSRNFVCIL 295

Query: 510  SSYLMLGYFKEVDEVFEQWKQSTTTDFDSYACSRLLSAVAGTGLVDKADGLRALMIQKN 334
            SSYLMLG+ KEV E+ +QWKQSTTTDFD  AC+RLL A++  GL + A+    L+I++N
Sbjct: 296  SSYLMLGHLKEVGEIVDQWKQSTTTDFDISACNRLLDAISCLGLTEIANNFHMLLIERN 354


>ref|XP_002268952.2| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
            mitochondrial [Vitis vinifera]
          Length = 396

 Score =  388 bits (997), Expect = e-105
 Identities = 190/303 (62%), Positives = 237/303 (78%)
 Frame = -1

Query: 1224 YKHALEISEWMIRNQDFELSDSDYGVRIDLMTKVFGIDAAERYFEGLPLEVKTGETYTSL 1045
            YKHALEISEWM+ + +FELSDSD  VRIDLMT+VFGIDAAERYFEGLP   KT ETYT+L
Sbjct: 92   YKHALEISEWMVSHDEFELSDSDNAVRIDLMTRVFGIDAAERYFEGLPSAAKTSETYTAL 151

Query: 1044 LHSYAGAKTTERAENFFQRVKEENVSLNAMMYNEMMTLYMSVGQLEKVPSVIEDMKRRKV 865
            LHSYAGAK  E+AE  ++R+KE NV LN ++YNEMMTLYMSVGQ+EKV  V+E++KR+KV
Sbjct: 152  LHSYAGAKLAEKAEELYERIKESNVPLNILLYNEMMTLYMSVGQVEKVSLVVEELKRQKV 211

Query: 864  SPDLFTYNLWISACAANLDIDSVKSILDEMSCDPNSDGGWEIYRQLTSIYINAGNLVNSD 685
             PDLFTYNLW+S+CAA LDID V+ IL EMS + +++ GW  YR L +IYI AG+LVNS 
Sbjct: 212  VPDLFTYNLWVSSCAATLDIDGVRRILKEMSNNSSANDGWVRYRNLANIYIMAGHLVNSA 271

Query: 684  GTSVVETERKITQRESITYDFLIILYTGLKNKEKINQIWKSLRMAPMKMTSRNYICVISS 505
              SVVE     TQR+ ITYDFLIILY GL NK+KI+QIWKSL+M   K+ SR+Y+C++SS
Sbjct: 272  SNSVVEAGTNTTQRDWITYDFLIILYAGLGNKDKIDQIWKSLKMTKQKIKSRSYVCILSS 331

Query: 504  YLMLGYFKEVDEVFEQWKQSTTTDFDSYACSRLLSAVAGTGLVDKADGLRALMIQKNYNP 325
            Y+MLG+ K+V  V ++WK+STTTDFD     RLL A A   L+++A+    L+I+K+  P
Sbjct: 332  YVMLGHIKDVGIVIDEWKKSTTTDFDISVFYRLLDAFAELRLIEEAETFHKLLIRKSCLP 391

Query: 324  EDE 316
             DE
Sbjct: 392  TDE 394