BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00016984
         (1574 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002301588.1| f-box family protein [Populus trichocarpa] g...    86   4e-25
ref|XP_002320506.1| f-box family protein [Populus trichocarpa] g...    81   7e-24
ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus ...    92   7e-23
ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vi...    79   1e-22
ref|XP_002308787.1| f-box family protein [Populus trichocarpa] g...   107   7e-21

>ref|XP_002301588.1| f-box family protein [Populus trichocarpa]
            gi|222843314|gb|EEE80861.1| f-box family protein [Populus
            trichocarpa]
          Length = 408

 Score = 85.9 bits (211), Expect(2) = 4e-25
 Identities = 77/277 (27%), Positives = 124/277 (44%), Gaps = 27/277 (9%)
 Frame = -3

Query: 1227 GLLCLSKRGNKRRNINIFNPITGEHQQLPHCT-LPNNCKRITKYMSGFGYDVSMQQFKMV 1051
            GLLCLS       ++ I+NP TG +++LP     P+      + + GFG++    ++K++
Sbjct: 129  GLLCLSD-SLFNDSLYIYNPFTGRYKELPKSLQYPDQ-----EVVFGFGFNPKTNEYKVI 182

Query: 1050 LLLFYR--------PFKSINVQKEVQVYTLGSKDWRRKRGNVPNLSFPNYYFPKYYVHVS 895
             +++YR          + I    +VQ+ TLG   WR       +L   +Y   +     S
Sbjct: 183  RIVYYRNGHGRYPRSRRIIYPLSQVQILTLGCPGWR-------SLGKVSYRLVR---RAS 232

Query: 894  FVFANGSLHWIAIDNSSSNPKSRIVSFHLGVEEFTVFPTPDSIGQNSDDPLKYWALGVXX 715
                NG LHW++     + P  R+VSF L  E+F   P PD  G N  D    + L V  
Sbjct: 233  ETLVNGRLHWVSRP-CRNKPARRLVSFDLTDEQFREVPKPDCGGLNRCD----YHLAVLR 287

Query: 714  XXXXXXXXXXRQYVDAWVTKDCDGKTSWNKLFSVRDPL---VSHRLVRPIQ--------- 571
                         ++ WV K+ + K SW K +++   +   +   LVRP++         
Sbjct: 288  GCLSVAVYCNYGRLEIWVMKEYNVKESWVKEYNIGAYMPKGLKQNLVRPLKIWKNASNGR 347

Query: 570  ------VLKNGEILLTRAFPCLVAYNTNSKEFRLIEV 478
                  VLKNGEILL      LV+Y+    +F+ I++
Sbjct: 348  AVRALCVLKNGEILLEYKNRALVSYDPKKGKFKDIDL 384



 Score = 57.0 bits (136), Expect(2) = 4e-25
 Identities = 38/101 (37%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
 Frame = -1

Query: 1517 MDRLPCEIVTDILSRLPIKPLVHSRCVCKTWCTIISDPS----FQLNRAANTDPDLILHC 1350
            M+ LP EI  DILSRLPI  LV  +CVC+ W  +  DP     +       TDP +ILHC
Sbjct: 25   MELLPREIAQDILSRLPITSLVKFKCVCRAWRAMALDPEVVNLYLSCSTQETDPCVILHC 84

Query: 1349 KPLYQRNKIFFAEKNHQTIILKPKIIDVSLFDSMSLSYEIM 1227
                + N  F     H+    K K I    F SM   +E++
Sbjct: 85   DFPIRNNLYFVDFAAHEEEKEKVKRIRAP-FSSMMPEFEVV 124


>ref|XP_002320506.1| f-box family protein [Populus trichocarpa]
            gi|222861279|gb|EEE98821.1| f-box family protein [Populus
            trichocarpa]
          Length = 422

 Score = 81.3 bits (199), Expect(2) = 7e-24
 Identities = 77/277 (27%), Positives = 125/277 (45%), Gaps = 27/277 (9%)
 Frame = -3

Query: 1227 GLLCLSKRGNKRRNINIFNPITGEHQQLPHCT-LPNNCKRITKYMSGFGYDVSMQQFKMV 1051
            GLLCLS       ++ I+NP TG +++LP     P+      + +SGFG++   +++K++
Sbjct: 130  GLLCLSD-SLYNDSLYIYNPFTGCYKELPKSLQYPDQ-----EVVSGFGFNPKTKEYKVI 183

Query: 1050 LLLFYR--------PFKSINVQKEVQVYTLGSKDWRRKRGNVPNLSFPNYYFPKYYVHVS 895
             +++YR          + I    EVQ+ TLG  +WR       +L   +Y   +     S
Sbjct: 184  RIVYYRNGHGGYPRSRRIIYPLSEVQILTLGCPEWR-------SLGKVSYRLVR---RAS 233

Query: 894  FVFANGSLHWIAIDNSSSNPKSRIVSFHLGVEEFTVFPTPDSIGQNSDDPLKYWALGVXX 715
                NG LHWI+     + P  R+VSF L  E+F     PD  G N  +    + L V  
Sbjct: 234  GALVNGRLHWISRP-CRNKPARRLVSFDLTDEQFREVSKPDCGGLNRCN----YHLVVLR 288

Query: 714  XXXXXXXXXXRQYVDAWVTKDCDGKTSWNKLFSVRDPLV------------------SHR 589
                         ++ WV K+ + K SW K +++   +                   + R
Sbjct: 289  GCLSAAVYCNYGRLEIWVMKEYNVKESWVKEYNIGAYMPKGLKQNQDRQLKIWKNSSNGR 348

Query: 588  LVRPIQVLKNGEILLTRAFPCLVAYNTNSKEFRLIEV 478
            +V  + VLKNGEILL      LV+Y+  + +F+ IE+
Sbjct: 349  VVGALCVLKNGEILLEYKNRVLVSYDPKNGKFKDIEL 385



 Score = 57.4 bits (137), Expect(2) = 7e-24
 Identities = 39/102 (38%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
 Frame = -1

Query: 1517 MDRLPCEIVTDILSRLPIKPLVHSRCVCKTWCTIISDPSF-QLNRAANTD----PDLILH 1353
            M+ LP EI  DILSRLPI  LV  +CVC+ W  ++ DP    L  + +T     P LILH
Sbjct: 25   MELLPREIAHDILSRLPITSLVQFKCVCRAWRALVQDPQLVDLYLSCSTQDTDHPCLILH 84

Query: 1352 CKPLYQRNKIFFAEKNHQTIILKPKIIDVSLFDSMSLSYEIM 1227
            C    + N  F     H+    K K I    F SM   +E++
Sbjct: 85   CDFPIRNNLYFVDFAAHEEEKEKVKRIPAP-FSSMMPEFEVV 125


>ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis]
            gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase,
            putative [Ricinus communis]
          Length = 389

 Score = 92.0 bits (227), Expect(2) = 7e-23
 Identities = 72/253 (28%), Positives = 117/253 (46%), Gaps = 9/253 (3%)
 Frame = -3

Query: 1227 GLLCLSKRGNKRRNINIFNPITGEHQQLPHCTLPNNCKRITKYMS------GFGYDVSMQ 1066
            GLLC+    N   +I ++NP    H+ +P+  LP   KR     S      GFGYD+S  
Sbjct: 97   GLLCIC---NIVDDIALWNPSIRAHRVVPY--LPVELKRYFGMCSCRVSVFGFGYDLSND 151

Query: 1065 QFKMVLLLFYRPFKSINVQKEVQVYTLGSKDWRRKRGNVPNLSFPNYYFPKYYVHVSFVF 886
             +K+V +  +      + + EV+V++L    WRR           +  +   Y   + ++
Sbjct: 152  DYKLVRIAQFGGVDRKSFESEVKVFSLRKNSWRR---------IADMPYCVLYPGENGIY 202

Query: 885  ANGSLHWIAIDNSSSNPKSRIVSFHLGVEEFTVFPTPDSIGQNSDDPLKYWALGVXXXXX 706
            ANG+LHW+   +  S     IV+  LGVE++ V P P+ +  N +       +GV     
Sbjct: 203  ANGALHWLVSQDPDSTVADTIVALDLGVEDYHVVPKPEFVDMNCN-----MGVGVLQGCL 257

Query: 705  XXXXXXXRQYVDAWVTKDCDGKTSWNKLFSVR--DPLVSHRLVRPIQVLKNG-EILLTRA 535
                    + VD WV ++   K SW+KLFSV   + +   R ++P+   K+G E+L+   
Sbjct: 258  SLLAYARSERVDVWVMEEYMVKESWSKLFSVARLEVIGILRSLKPLAYSKSGNEVLIEHD 317

Query: 534  FPCLVAYNTNSKE 496
               L  Y+   KE
Sbjct: 318  NVNLFWYDLKRKE 330



 Score = 43.1 bits (100), Expect(2) = 7e-23
 Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
 Frame = -1

Query: 1517 MDRLPCEIVTDILSRLPIKPLVHSRCVCKTWCTIISDPSF---QLNRAANTDPDL--ILH 1353
            M  LP E++ +IL RL  K L+  RCV K W T+I  P+F    LN +  +  +L  IL 
Sbjct: 1    MSNLPLEMIAEILCRLTAKKLLCCRCVSKRWRTLIDSPTFIYLHLNHSIESPCNLSIILK 60

Query: 1352 CKPLY 1338
               LY
Sbjct: 61   SSELY 65


>ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vinifera]
            gi|147785390|emb|CAN68678.1| hypothetical protein
            VITISV_041941 [Vitis vinifera]
          Length = 409

 Score = 79.3 bits (194), Expect(2) = 1e-22
 Identities = 82/273 (30%), Positives = 118/273 (43%), Gaps = 27/273 (9%)
 Frame = -3

Query: 1227 GLLCLSKRGNKRRNINIFNPITGEHQQLPHCT-LPNNCKRITKYMSGFGYDVSMQQFKMV 1051
            GLLCL+    K   + + NP T + +QLP     P+      + + GFGY    + +K+V
Sbjct: 130  GLLCLADSLFKDA-VYVHNPFTRDFKQLPKSLQYPDQ-----EVVFGFGYHPMTEVYKVV 183

Query: 1050 LLLFYRP-------FKSINV-QKEVQVYTLGSKDWRRKRGNVPNLSFPNYYFPKYYVHVS 895
             +++YR        F+ I   Q EVQV TLGS  WR       +L   +Y   ++    S
Sbjct: 184  KVVYYRNGYGGFSRFRRITCSQSEVQVLTLGSPTWR-------SLGKVSYQLDRW---PS 233

Query: 894  FVFANGSLHWIAIDNSSSNPKSRIVSFHLGVEEFTVFPTPDSIGQNSDDPLKYWALGVXX 715
                NG LHW+            IVSF L  E+F   P PD  G +  +    + L V  
Sbjct: 234  EALVNGRLHWVT--RPRRYVTRFIVSFDLADEQFREIPKPDCGGLSRCN----YHLLVLG 287

Query: 714  XXXXXXXXXXRQYVDAWVTKDCDGKTSWNKLFSV---------RDPLVSHRL-------- 586
                         ++ WV K+ D K SW K F++         +D    HR+        
Sbjct: 288  GCLSAAVHRSNGKLEVWVMKEYDVKESWIKEFNIGAHLPKGLKQDVNRPHRIWRNAPKGR 347

Query: 585  -VRPIQVLKNGEILLTRAFPCLVAYNTNSKEFR 490
             VR + +LKNGEILL      LV+YN    +F+
Sbjct: 348  GVRLLCLLKNGEILLEYKGRVLVSYNPERGKFK 380



 Score = 55.1 bits (131), Expect(2) = 1e-22
 Identities = 34/73 (46%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
 Frame = -1

Query: 1517 MDRLPCEIVTDILSRLPIKPLVHSRCVCKTWCTIISD---PSFQLNRAANTDPDLILHCK 1347
            M+RLP +I+ DILSRLP+  LV  R VC+ W  +  D    S  L R A  +P LILHC 
Sbjct: 27   MERLPRDIILDILSRLPVTSLVQFRFVCRGWRLMAQDSLLASKHLCRTAQYNPCLILHCD 86

Query: 1346 -PLYQRNKIFFAE 1311
             P+  RN+I F +
Sbjct: 87   YPI--RNQISFVD 97


>ref|XP_002308787.1| f-box family protein [Populus trichocarpa]
            gi|222854763|gb|EEE92310.1| f-box family protein [Populus
            trichocarpa]
          Length = 396

 Score =  107 bits (268), Expect = 7e-21
 Identities = 89/278 (32%), Positives = 138/278 (49%), Gaps = 11/278 (3%)
 Frame = -3

Query: 1227 GLLCLSKRGNKRRNINIFNPITGEHQQLPHCTLPNNCKRI------TKYMSGFGYDVSMQ 1066
            GLLC+S   N   +I ++NP T +H+ +P   LP   KR       + Y+ GFGYD    
Sbjct: 104  GLLCIS---NVVDDIAVWNPSTRKHRVVPF--LPIELKRYFGTKSCSVYVFGFGYDSVRD 158

Query: 1065 QFKMVLLLFYRPFKSINVQKEVQVYTLGSKDWRRKRGNVPNLSFPNYYFPKYYVHVSFVF 886
             +K+V +  +      + + EV+VY+L  + WRR  G++P        +  +Y   + VF
Sbjct: 159  DYKLVRIAQFGGGGKRSFESEVKVYSLRKQSWRRI-GDMP--------YCVHYPGANGVF 209

Query: 885  ANGSLHWIAIDNSSSNPKSRIVSFHLGVEEFTVFPTPDSIGQNSDDPLKYWALGVXXXXX 706
            ANG+LHW+  +N  SN  + +V+  LGVE++     P+   +N      Y  LGV     
Sbjct: 210  ANGALHWVVGENPESNVANIVVALDLGVEDYREVLQPEYKDKNF-----YIDLGVLRGCL 264

Query: 705  XXXXXXXRQYVDAWVTKDCDGKTSWNKLFSVR--DPLVSHRLVRPIQVLKNG-EILLTRA 535
                    + VD W+ K+   K SW KLFSV   + +   R ++P+   K+G E+L+   
Sbjct: 265  CFLANFLGERVDVWMMKEYGVKESWTKLFSVAQYEVIGFLRSLKPLAYSKSGDEVLIEHD 324

Query: 534  FPCLVAYNTNSKEF--RLIEVPLGSFEPIPFVATLISV 427
               L  Y+   K+   R+  +P  SFE   FV +LISV
Sbjct: 325  NLDLCWYDLKRKQVKNRIPGIPY-SFEADTFVESLISV 361