BLASTX nr result
ID: Coptis23_contig00016981
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00016981
(869 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002279685.1| PREDICTED: 29 kDa ribonucleoprotein B, chlor... 204 2e-54
emb|CBI33876.3| unnamed protein product [Vitis vinifera] 204 2e-54
ref|XP_004164674.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop... 192 6e-51
ref|XP_004148763.1| PREDICTED: 29 kDa ribonucleoprotein B, chlor... 192 6e-51
ref|XP_002527668.1| ribonucleoprotein, chloroplast, putative [Ri... 193 6e-51
>ref|XP_002279685.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic [Vitis
vinifera]
Length = 288
Score = 204 bits (520), Expect(2) = 2e-54
Identities = 105/167 (62%), Positives = 120/167 (71%), Gaps = 2/167 (1%)
Frame = +2
Query: 233 NRKKKLCIFNIPYSYSVTGIKTLLAECGTVKDVEIIKQKDGRHKGFAFITMASADEAQTV 412
N+K+KL + N+P+S SV IK L ECGTV DVEIIKQKDGR +G+AF+TM S +EAQ V
Sbjct: 86 NQKRKLFVLNLPWSLSVVDIKNLFGECGTVTDVEIIKQKDGRSRGYAFVTMDSGEEAQAV 145
Query: 413 IEKFDSYELSGRIIRVELAKRW--XXXXXXXXXXXXXXXETPHKLYVSNLAWKARATHLR 586
+EKFDSYELSGRIIRVE AKR+ ET HKLYVSNLAWK R+THLR
Sbjct: 146 VEKFDSYELSGRIIRVEFAKRFKKPSPPPPPPPAGPPAGETRHKLYVSNLAWKVRSTHLR 205
Query: 587 EFFSSEFNPVSARVVFDTPSGGSAGYGFVSFXXXXXXXXXISSMDGK 727
EFFSS FNPVS RVVFD+PSG S GYGF SF IS++DGK
Sbjct: 206 EFFSSNFNPVSVRVVFDSPSGRSGGYGFASFATKEEAEAAISALDGK 252
Score = 34.7 bits (78), Expect(2) = 2e-54
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 751 G*ELMGRPIRLKFSERNVDGSSD-LEAQITPDGQSKEA 861
G ELMGRP+ LKFS + +D S D E +GQ +EA
Sbjct: 251 GKELMGRPVHLKFSVKTIDESGDEKEEGDISEGQPEEA 288
>emb|CBI33876.3| unnamed protein product [Vitis vinifera]
Length = 258
Score = 204 bits (520), Expect(2) = 2e-54
Identities = 105/167 (62%), Positives = 120/167 (71%), Gaps = 2/167 (1%)
Frame = +2
Query: 233 NRKKKLCIFNIPYSYSVTGIKTLLAECGTVKDVEIIKQKDGRHKGFAFITMASADEAQTV 412
N+K+KL + N+P+S SV IK L ECGTV DVEIIKQKDGR +G+AF+TM S +EAQ V
Sbjct: 56 NQKRKLFVLNLPWSLSVVDIKNLFGECGTVTDVEIIKQKDGRSRGYAFVTMDSGEEAQAV 115
Query: 413 IEKFDSYELSGRIIRVELAKRW--XXXXXXXXXXXXXXXETPHKLYVSNLAWKARATHLR 586
+EKFDSYELSGRIIRVE AKR+ ET HKLYVSNLAWK R+THLR
Sbjct: 116 VEKFDSYELSGRIIRVEFAKRFKKPSPPPPPPPAGPPAGETRHKLYVSNLAWKVRSTHLR 175
Query: 587 EFFSSEFNPVSARVVFDTPSGGSAGYGFVSFXXXXXXXXXISSMDGK 727
EFFSS FNPVS RVVFD+PSG S GYGF SF IS++DGK
Sbjct: 176 EFFSSNFNPVSVRVVFDSPSGRSGGYGFASFATKEEAEAAISALDGK 222
Score = 34.7 bits (78), Expect(2) = 2e-54
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 751 G*ELMGRPIRLKFSERNVDGSSD-LEAQITPDGQSKEA 861
G ELMGRP+ LKFS + +D S D E +GQ +EA
Sbjct: 221 GKELMGRPVHLKFSVKTIDESGDEKEEGDISEGQPEEA 258
>ref|XP_004164674.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 288
Score = 192 bits (487), Expect(2) = 6e-51
Identities = 97/165 (58%), Positives = 120/165 (72%)
Frame = +2
Query: 233 NRKKKLCIFNIPYSYSVTGIKTLLAECGTVKDVEIIKQKDGRHKGFAFITMASADEAQTV 412
N+K+KL IFN+P+S SV IK L +CGTV DVEIIKQK+GR +GFAF+TMAS DEAQ
Sbjct: 91 NQKRKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQKNGRSRGFAFVTMASPDEAQAA 150
Query: 413 IEKFDSYELSGRIIRVELAKRWXXXXXXXXXXXXXXXETPHKLYVSNLAWKARATHLREF 592
I+KFDS E+SGR+I+VE AKR ET +KLYVSNLAWK R+ +LR+F
Sbjct: 151 IQKFDSQEISGRVIKVEFAKR-LKKPPPPKPPGPPPGETVNKLYVSNLAWKVRSNNLRDF 209
Query: 593 FSSEFNPVSARVVFDTPSGGSAGYGFVSFXXXXXXXXXISSMDGK 727
FS FNP++ARVVFD+P+G SAGYGFVSF +SS++GK
Sbjct: 210 FSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALSSLEGK 254
Score = 35.8 bits (81), Expect(2) = 6e-51
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +1
Query: 751 G*ELMGRPIRLKFSERNVD 807
G ELMGRP+RLKFSERNV+
Sbjct: 253 GKELMGRPLRLKFSERNVN 271
>ref|XP_004148763.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic-like [Cucumis
sativus]
Length = 282
Score = 192 bits (487), Expect(2) = 6e-51
Identities = 97/165 (58%), Positives = 120/165 (72%)
Frame = +2
Query: 233 NRKKKLCIFNIPYSYSVTGIKTLLAECGTVKDVEIIKQKDGRHKGFAFITMASADEAQTV 412
N+K+KL IFN+P+S SV IK L +CGTV DVEIIKQK+GR +GFAF+TMAS DEAQ
Sbjct: 85 NQKRKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQKNGRSRGFAFVTMASPDEAQAA 144
Query: 413 IEKFDSYELSGRIIRVELAKRWXXXXXXXXXXXXXXXETPHKLYVSNLAWKARATHLREF 592
I+KFDS E+SGR+I+VE AKR ET +KLYVSNLAWK R+ +LR+F
Sbjct: 145 IQKFDSQEISGRVIKVEFAKR-LKKPPPPKPPGPPPGETVNKLYVSNLAWKVRSNNLRDF 203
Query: 593 FSSEFNPVSARVVFDTPSGGSAGYGFVSFXXXXXXXXXISSMDGK 727
FS FNP++ARVVFD+P+G SAGYGFVSF +SS++GK
Sbjct: 204 FSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALSSLEGK 248
Score = 35.8 bits (81), Expect(2) = 6e-51
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +1
Query: 751 G*ELMGRPIRLKFSERNVD 807
G ELMGRP+RLKFSERNV+
Sbjct: 247 GKELMGRPLRLKFSERNVN 265
>ref|XP_002527668.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223532973|gb|EEF34739.1| ribonucleoprotein,
chloroplast, putative [Ricinus communis]
Length = 278
Score = 193 bits (491), Expect(2) = 6e-51
Identities = 97/164 (59%), Positives = 121/164 (73%)
Frame = +2
Query: 236 RKKKLCIFNIPYSYSVTGIKTLLAECGTVKDVEIIKQKDGRHKGFAFITMASADEAQTVI 415
+K+KL +FN+P+S SV IK L +CGTV DVEIIKQK+GR +GFAF+T+AS +EAQ I
Sbjct: 81 QKRKLYVFNLPWSLSVVDIKNLFGQCGTVTDVEIIKQKNGRSRGFAFVTLASGEEAQAAI 140
Query: 416 EKFDSYELSGRIIRVELAKRWXXXXXXXXXXXXXXXETPHKLYVSNLAWKARATHLREFF 595
+K DS+E+SGRIIRVE AKR ET HK+YVSNLAWK R+THLREFF
Sbjct: 141 DKLDSHEVSGRIIRVEFAKR-LKPPSPPSPTGTSARETRHKIYVSNLAWKVRSTHLREFF 199
Query: 596 SSEFNPVSARVVFDTPSGGSAGYGFVSFXXXXXXXXXISSMDGK 727
S+ F+PVS+RVVFD+P+G S+GYGFVSF IS++DGK
Sbjct: 200 STNFSPVSSRVVFDSPTGRSSGYGFVSFATREEAEAAISALDGK 243
Score = 34.3 bits (77), Expect(2) = 6e-51
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Frame = +1
Query: 751 G*ELMGRPIRLKFSERNVDGS-SDLEAQITPDGQSKE 858
G ELMGRP+RLKFS+R D S S+ + + + QS++
Sbjct: 242 GKELMGRPLRLKFSDRKTDESESENQEEENVEDQSEQ 278