BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00016960
         (1159 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002312936.1| predicted protein [Populus trichocarpa] gi|2...   313   4e-83
ref|XP_004144868.1| PREDICTED: heterodimeric geranylgeranyl pyro...   311   2e-82
gb|ADZ24721.1| geranylgeranyl pyrophosphate synthase 4 [Solanum ...   311   2e-82
ref|XP_003631564.1| PREDICTED: geranylgeranyl pyrophosphate synt...   310   4e-82
ref|XP_003631563.1| PREDICTED: geranylgeranyl pyrophosphate synt...   309   8e-82

>ref|XP_002312936.1| predicted protein [Populus trichocarpa] gi|222849344|gb|EEE86891.1|
           predicted protein [Populus trichocarpa]
          Length = 314

 Score =  313 bits (803), Expect = 4e-83
 Identities = 172/288 (59%), Positives = 199/288 (69%), Gaps = 1/288 (0%)
 Frame = -3

Query: 872 RCSSSVSTPMQS-QFDLKTYWTTLITEINHKLDQSIPIKYPQQIYESMRYSVLAHGAKRA 696
           +CS SVST  ++ QFDLKTYWTTLI EIN KLDQ++PI+YP +IYE+MRYSVLA GAKRA
Sbjct: 5   QCSLSVSTHSKTPQFDLKTYWTTLILEINQKLDQAVPIQYPDKIYEAMRYSVLAKGAKRA 64

Query: 695 SPIMCIAVCELFGVSRXXXXXXXXXXXXXXXXXXXXXXAAFPTACALEMVHEASLIHXXX 516
            P+MC+A CELFG +R                      AAFPTACALEMVH ASLIH   
Sbjct: 65  PPVMCVAACELFGGNR---------------------HAAFPTACALEMVHSASLIHDDL 103

Query: 515 XXXXXXLFRRGRLSNHAIYGVDMAVXXXXXXXXXXXXXXXXXXXXXXXXXAGDALFPLGF 336
                   RRG+ SNH IYGVDMA+                         AGDALFPLGF
Sbjct: 104 PCMDDDPSRRGQPSNHKIYGVDMAI------------------------LAGDALFPLGF 139

Query: 335 QHIVSDTPSSLVPETSVLRIIAEIARAVGSTGMAAGQFLDLTNAEDSQTEYVQEKKFGEL 156
           +HIVS TPS LVPE  +L +IAEIARAVGSTGMAAGQFLDL    +S  E+VQEKKFGE+
Sbjct: 140 RHIVSHTPSDLVPEPRLLSVIAEIARAVGSTGMAAGQFLDLEGGPNS-VEFVQEKKFGEM 198

Query: 155 AECSAVCGGLLGGATDEELERLRKYGRAVGVLYQVVEEILEIKREKTE 12
            ECSAVCGGLL GA D+E++RLR+YGRAVGVLYQVV++ILE K  K++
Sbjct: 199 GECSAVCGGLLAGAKDDEIQRLRRYGRAVGVLYQVVDDILEAKTMKSK 246


>ref|XP_004144868.1| PREDICTED: heterodimeric geranylgeranyl pyrophosphate synthase
           small subunit, chloroplastic-like [Cucumis sativus]
           gi|449508802|ref|XP_004163415.1| PREDICTED:
           heterodimeric geranylgeranyl pyrophosphate synthase
           small subunit, chloroplastic-like [Cucumis sativus]
          Length = 335

 Score =  311 bits (798), Expect = 2e-82
 Identities = 170/297 (57%), Positives = 199/297 (67%), Gaps = 5/297 (1%)
 Frame = -3

Query: 887 QKHRFRCSSSVSTPMQSQ-----FDLKTYWTTLITEINHKLDQSIPIKYPQQIYESMRYS 723
           +K   RCSSS S  + SQ     FDLKTYW  LI EIN KLD+++P++YP QIYE+MRYS
Sbjct: 17  RKTPIRCSSSSSPALSSQPQSIHFDLKTYWKQLILEINQKLDEAVPLQYPDQIYEAMRYS 76

Query: 722 VLAHGAKRASPIMCIAVCELFGVSRXXXXXXXXXXXXXXXXXXXXXXAAFPTACALEMVH 543
           VLA GAKRA P+MC+A CELFGV R                      AAFPTACALEMVH
Sbjct: 77  VLAQGAKRAPPVMCVAACELFGVDR---------------------LAAFPTACALEMVH 115

Query: 542 EASLIHXXXXXXXXXLFRRGRLSNHAIYGVDMAVXXXXXXXXXXXXXXXXXXXXXXXXXA 363
           EASLIH           RRG+ SNH +YGVDMA+                         A
Sbjct: 116 EASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAI------------------------LA 151

Query: 362 GDALFPLGFQHIVSDTPSSLVPETSVLRIIAEIARAVGSTGMAAGQFLDLTNAEDSQTEY 183
           GDALFPLGFQHIVS TP  LVPE+ +LR++AEIARAVGS GMAAGQFLDL    +S  E+
Sbjct: 152 GDALFPLGFQHIVSHTPFDLVPESRLLRVVAEIARAVGSRGMAAGQFLDLEGGPNS-VEF 210

Query: 182 VQEKKFGELAECSAVCGGLLGGATDEELERLRKYGRAVGVLYQVVEEILEIKREKTE 12
           VQEKKFGE+A+CSAVCGGLL GA D E++RLR+YGRAVGVLYQVV++ILE + +K +
Sbjct: 211 VQEKKFGEMAQCSAVCGGLLAGAEDHEIQRLRRYGRAVGVLYQVVDDILEEQSKKLD 267


>gb|ADZ24721.1| geranylgeranyl pyrophosphate synthase 4 [Solanum pennellii]
          Length = 334

 Score =  311 bits (797), Expect = 2e-82
 Identities = 166/291 (57%), Positives = 200/291 (68%), Gaps = 1/291 (0%)
 Frame = -3

Query: 872 RCSSSVSTPMQS-QFDLKTYWTTLITEINHKLDQSIPIKYPQQIYESMRYSVLAHGAKRA 696
           +CSSSVST  +S +FDLKTYWTTLI +IN KLD+++P+KYP QIYE+MRYSVLA GAKR+
Sbjct: 27  QCSSSVSTASESVKFDLKTYWTTLIVDINQKLDEAVPVKYPNQIYEAMRYSVLAKGAKRS 86

Query: 695 SPIMCIAVCELFGVSRXXXXXXXXXXXXXXXXXXXXXXAAFPTACALEMVHEASLIHXXX 516
            PIMC+A CELFG +R                      AAFPTACALEMVH ASLIH   
Sbjct: 87  PPIMCVAACELFGGNR---------------------LAAFPTACALEMVHAASLIHDDL 125

Query: 515 XXXXXXLFRRGRLSNHAIYGVDMAVXXXXXXXXXXXXXXXXXXXXXXXXXAGDALFPLGF 336
                   RRG  +NH ++GVDMA+                         AGDALFPLGF
Sbjct: 126 PCMDDDTTRRGLPANHTVFGVDMAI------------------------LAGDALFPLGF 161

Query: 335 QHIVSDTPSSLVPETSVLRIIAEIARAVGSTGMAAGQFLDLTNAEDSQTEYVQEKKFGEL 156
           QHIVS TPS LVPE  +LR+I EIARAVGSTGMAAGQFLDL    ++  ++VQEKK+GE+
Sbjct: 162 QHIVSHTPSDLVPEDRILRVITEIARAVGSTGMAAGQFLDLEGGPNA-VDFVQEKKYGEM 220

Query: 155 AECSAVCGGLLGGATDEELERLRKYGRAVGVLYQVVEEILEIKREKTEEEG 3
            ECSAVCG LL GA+DEE++ +RKYGRAVGVLY+VV++ILE K+ + + EG
Sbjct: 221 GECSAVCGALLAGASDEEIQHMRKYGRAVGVLYRVVDDILEAKKTEDKTEG 271


>ref|XP_003631564.1| PREDICTED: geranylgeranyl pyrophosphate synthase-related protein,
           chloroplastic-like isoform 2 [Vitis vinifera]
          Length = 341

 Score =  310 bits (794), Expect = 4e-82
 Identities = 167/292 (57%), Positives = 200/292 (68%), Gaps = 3/292 (1%)
 Frame = -3

Query: 872 RCSS---SVSTPMQSQFDLKTYWTTLITEINHKLDQSIPIKYPQQIYESMRYSVLAHGAK 702
           RCSS   SVS     QFDL++YWTTLI+EIN KL+++IP+KYPQQIYE+MRYSVLA G K
Sbjct: 32  RCSSPSISVSPSKSMQFDLRSYWTTLISEINTKLEEAIPVKYPQQIYEAMRYSVLAKGGK 91

Query: 701 RASPIMCIAVCELFGVSRXXXXXXXXXXXXXXXXXXXXXXAAFPTACALEMVHEASLIHX 522
           RA P+MC+AVCELFG  R                      AAFPTACALEMVH ASLIH 
Sbjct: 92  RAPPVMCVAVCELFGGDR---------------------LAAFPTACALEMVHAASLIHD 130

Query: 521 XXXXXXXXLFRRGRLSNHAIYGVDMAVXXXXXXXXXXXXXXXXXXXXXXXXXAGDALFPL 342
                     RRG+ SNH +YGVDMA+                         AGDALFPL
Sbjct: 131 DLPCMDDDPSRRGQPSNHTVYGVDMAI------------------------LAGDALFPL 166

Query: 341 GFQHIVSDTPSSLVPETSVLRIIAEIARAVGSTGMAAGQFLDLTNAEDSQTEYVQEKKFG 162
           GF+HIVS TPS LVPE  ++R+IAEIAR+VGSTGMAAGQFLDL  A +S  ++VQ KKFG
Sbjct: 167 GFRHIVSHTPSHLVPEGQLIRVIAEIARSVGSTGMAAGQFLDLEGAPNS-VDFVQRKKFG 225

Query: 161 ELAECSAVCGGLLGGATDEELERLRKYGRAVGVLYQVVEEILEIKREKTEEE 6
           E+AECSAVCGG LGGA D+++ RLR+YGRAVG+LYQVV+++L+ K +  E+E
Sbjct: 226 EMAECSAVCGGFLGGAADDDILRLRRYGRAVGMLYQVVDDVLKAKTKSEEDE 277


>ref|XP_003631563.1| PREDICTED: geranylgeranyl pyrophosphate synthase-related protein,
           chloroplastic-like isoform 1 [Vitis vinifera]
          Length = 341

 Score =  309 bits (792), Expect = 8e-82
 Identities = 167/299 (55%), Positives = 202/299 (67%), Gaps = 3/299 (1%)
 Frame = -3

Query: 893 LHQKHRFRCSS---SVSTPMQSQFDLKTYWTTLITEINHKLDQSIPIKYPQQIYESMRYS 723
           L+     RC+S   SVS     QFDL++YWTTLI+EIN KL+++IP+KYPQQIYE+MRYS
Sbjct: 25  LNLPRTIRCTSPSISVSPSKSMQFDLRSYWTTLISEINTKLEEAIPVKYPQQIYEAMRYS 84

Query: 722 VLAHGAKRASPIMCIAVCELFGVSRXXXXXXXXXXXXXXXXXXXXXXAAFPTACALEMVH 543
           VLA G KRA P+MC+AVCELFG  R                      AAFPTACALEMVH
Sbjct: 85  VLAKGGKRAPPVMCVAVCELFGGDR---------------------LAAFPTACALEMVH 123

Query: 542 EASLIHXXXXXXXXXLFRRGRLSNHAIYGVDMAVXXXXXXXXXXXXXXXXXXXXXXXXXA 363
            ASLIH           RRG+ SNH +YGVDMA+                         A
Sbjct: 124 AASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAI------------------------LA 159

Query: 362 GDALFPLGFQHIVSDTPSSLVPETSVLRIIAEIARAVGSTGMAAGQFLDLTNAEDSQTEY 183
           GDALFPLGF+HIVS TPS LVPE  ++R+IAEIAR+VGSTGMAAGQFLDL  A +S  ++
Sbjct: 160 GDALFPLGFRHIVSHTPSHLVPEGQLIRVIAEIARSVGSTGMAAGQFLDLEGAPNS-VDF 218

Query: 182 VQEKKFGELAECSAVCGGLLGGATDEELERLRKYGRAVGVLYQVVEEILEIKREKTEEE 6
           VQ KKFGE+AECSAVCGG LGGA D+++ RLR+YGRAVG+LYQVV+++L+ K +  E+E
Sbjct: 219 VQRKKFGEMAECSAVCGGFLGGAADDDILRLRRYGRAVGMLYQVVDDVLKAKTKSEEDE 277