BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00016939
         (1116 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282496.1| PREDICTED: putative mediator of RNA polymera...   370   e-100
emb|CAN68925.1| hypothetical protein VITISV_044247 [Vitis vinifera]   360   3e-97
ref|XP_002515912.1| RNA polymerase II mediator complex subunit, ...   350   4e-94
ref|XP_003531638.1| PREDICTED: putative mediator of RNA polymera...   350   5e-94
ref|XP_002331927.1| predicted protein [Populus trichocarpa] gi|2...   348   2e-93

>ref|XP_002282496.1| PREDICTED: putative mediator of RNA polymerase II transcription
            subunit 6 [Vitis vinifera]
          Length = 258

 Score =  370 bits (949), Expect = e-100
 Identities = 192/258 (74%), Positives = 206/258 (79%), Gaps = 6/258 (2%)
 Frame = -3

Query: 1042 MAGTPLMQQNQAIGNPVLEG----VPSVPGTDMTGICFRDQLWLNSYPLDRNLVFDYFAL 875
            MA TP+   N A GNP  +G    VP+ PGTDMTGICFRDQLWLNSYPLDRNLVFDYFAL
Sbjct: 1    MASTPMAPPNPAAGNPNFDGNPPAVPTPPGTDMTGICFRDQLWLNSYPLDRNLVFDYFAL 60

Query: 874  SPFYDFSCNNEQLRVRSIHPLDISHLSKMTGIEYTLSEVMEPHLFVFRKQKRDTAEKVTP 695
            SPFYD++CNNEQLR+RSIHPLD SHLSKMTG EY L+EVMEPHLFV RKQKRD  EKVTP
Sbjct: 61   SPFYDWTCNNEQLRLRSIHPLDTSHLSKMTGTEYMLNEVMEPHLFVIRKQKRDGPEKVTP 120

Query: 694  MLTYYVLDGSIYQAPQLCNVFAARIGRALYHISKSFTTAASKLEKIGFVDGESETATLEP 515
            MLTYY+LDGSIYQAPQLCNVF ARIGRALYHISK+FTTAASKLEKIG+VD E+E   LE 
Sbjct: 121  MLTYYILDGSIYQAPQLCNVFTARIGRALYHISKAFTTAASKLEKIGYVDAENENPALES 180

Query: 514  KVAKESIDFKEVKRVDHILASLQRKL-GXXXXXXXXXXXXXXPTSEAEKGSENQQGTETQ 338
            KV KE+IDFKEV RVD ILASLQRKL                PT+E EKG E QQ  E Q
Sbjct: 181  KVGKETIDFKEVMRVDQILASLQRKLPPAPPPPQFPEGYAPPPTAEGEKGPETQQAAEPQ 240

Query: 337  LP-LDPIIDQGPSKRTKY 287
            LP LDPIIDQGPSKR K+
Sbjct: 241  LPALDPIIDQGPSKRMKF 258


>emb|CAN68925.1| hypothetical protein VITISV_044247 [Vitis vinifera]
          Length = 253

 Score =  360 bits (925), Expect = 3e-97
 Identities = 187/249 (75%), Positives = 200/249 (80%), Gaps = 6/249 (2%)
 Frame = -3

Query: 1015 NQAIGNPVLEG----VPSVPGTDMTGICFRDQLWLNSYPLDRNLVFDYFALSPFYDFSCN 848
            N A GNP  +G     P+ PGTDMTGICFRDQLWLNSYPLDRNLVFDYFALSPFYD++CN
Sbjct: 5    NPAAGNPNFDGNPPAAPTPPGTDMTGICFRDQLWLNSYPLDRNLVFDYFALSPFYDWTCN 64

Query: 847  NEQLRVRSIHPLDISHLSKMTGIEYTLSEVMEPHLFVFRKQKRDTAEKVTPMLTYYVLDG 668
            NEQLR+RSIHPLD SHLSKMTG EY L+EVMEPHLFV RKQKRD  EKVTPMLTYY+LDG
Sbjct: 65   NEQLRLRSIHPLDTSHLSKMTGTEYMLNEVMEPHLFVIRKQKRDGPEKVTPMLTYYILDG 124

Query: 667  SIYQAPQLCNVFAARIGRALYHISKSFTTAASKLEKIGFVDGESETATLEPKVAKESIDF 488
            SIYQAPQLCNVF ARIGRALYHISK+FTTAASKLEKIG+VD E+E   LE KV KE+IDF
Sbjct: 125  SIYQAPQLCNVFTARIGRALYHISKAFTTAASKLEKIGYVDAENENPALESKVGKETIDF 184

Query: 487  KEVKRVDHILASLQRKL-GXXXXXXXXXXXXXXPTSEAEKGSENQQGTETQLP-LDPIID 314
            KEV RVD ILASLQRKL                PT+E EKG E QQ  E QLP LDPIID
Sbjct: 185  KEVMRVDQILASLQRKLPPAPPAPQFPEGYAPPPTAEGEKGPETQQAAEPQLPALDPIID 244

Query: 313  QGPSKRTKY 287
            QGPSKR K+
Sbjct: 245  QGPSKRMKF 253


>ref|XP_002515912.1| RNA polymerase II mediator complex subunit, putative [Ricinus
            communis] gi|223544817|gb|EEF46332.1| RNA polymerase II
            mediator complex subunit, putative [Ricinus communis]
          Length = 251

 Score =  350 bits (898), Expect = 4e-94
 Identities = 178/241 (73%), Positives = 198/241 (82%), Gaps = 2/241 (0%)
 Frame = -3

Query: 1003 GNPVLEGVPSVPGTDMTGICFRDQLWLNSYPLDRNLVFDYFALSPFYDFSCNNEQLRVRS 824
            GNP+    P  PGTDMTGICFRDQLWLN+YPLDRNL+FDYFALSPFYD++CNNEQLR++S
Sbjct: 12   GNPLAPAPPQPPGTDMTGICFRDQLWLNTYPLDRNLIFDYFALSPFYDWTCNNEQLRLQS 71

Query: 823  IHPLDISHLSKMTGIEYTLSEVMEPHLFVFRKQKRDTAEKVTPMLTYYVLDGSIYQAPQL 644
            IHPLD+SHLSKMTG EY L+EV+EP+LFV RKQKRD+ EKVTPMLTYYVLDGSIYQAPQL
Sbjct: 72   IHPLDLSHLSKMTGTEYMLNEVIEPNLFVIRKQKRDSPEKVTPMLTYYVLDGSIYQAPQL 131

Query: 643  CNVFAARIGRALYHISKSFTTAASKLEKIGFVDGESETATLEPKVAKESIDFKEVKRVDH 464
            CNVFAARIGRALYHISK+FTTAASKLEKIG+VD E E    E KV KE IDFKEVKR+DH
Sbjct: 132  CNVFAARIGRALYHISKAFTTAASKLEKIGYVD-EGEGVASESKVGKEVIDFKEVKRIDH 190

Query: 463  ILASLQRKL-GXXXXXXXXXXXXXXPTSEAEKGSENQQGTETQ-LPLDPIIDQGPSKRTK 290
            ILAS+QRKL                 T EAEKGSE +Q  ETQ  P+DPIIDQGP+KR K
Sbjct: 191  ILASIQRKLPPAPPPPPFPEGYVPPATVEAEKGSETRQAVETQPPPVDPIIDQGPAKRMK 250

Query: 289  Y 287
            +
Sbjct: 251  F 251


>ref|XP_003531638.1| PREDICTED: putative mediator of RNA polymerase II transcription
            subunit 6-like [Glycine max]
          Length = 252

 Score =  350 bits (897), Expect = 5e-94
 Identities = 183/249 (73%), Positives = 201/249 (80%), Gaps = 8/249 (3%)
 Frame = -3

Query: 1009 AIGNPVLEG---VPSVPGTDMTGICFRDQLWLNSYPLDRNLVFDYFALSPFYDFSCNNEQ 839
            A GN +LEG    P  PGTDMTGICFRDQLWLNS+PLDRNLVFDYFALSPFYD++CNNEQ
Sbjct: 4    APGNQMLEGGGGAPQPPGTDMTGICFRDQLWLNSFPLDRNLVFDYFALSPFYDWTCNNEQ 63

Query: 838  LRVRSIHPLDISHLSKMTGIEYTLSEVMEPHLFVFRKQKRDTAEKVTPMLTYYVLDGSIY 659
            LR+RS+HPLDIS LSKMTG EY LSEVMEPHLFV RKQKRD+ +KVTPML YYVLDGSIY
Sbjct: 64   LRMRSVHPLDISQLSKMTGTEYMLSEVMEPHLFVIRKQKRDSPDKVTPMLAYYVLDGSIY 123

Query: 658  QAPQLCNVFAARIGRALYHISKSFTTAASKLEKIGF---VDGESETATLEPKVAKESIDF 488
            QAPQLCNVFAARIGRALY+I K+FTTAASKLEKIG+    D E+ETA LE K AKE+ID 
Sbjct: 124  QAPQLCNVFAARIGRALYYIQKAFTTAASKLEKIGYAGSADSENETALLESKTAKETIDI 183

Query: 487  KEVKRVDHILASLQRKL-GXXXXXXXXXXXXXXPTSEAEKGSENQQGTETQLP-LDPIID 314
            KEVKRVDHILASLQRKL                PT+E EKG+E Q+  ETQ P  DPIID
Sbjct: 184  KEVKRVDHILASLQRKLPPAPPPPPFPEGYVPPPTAETEKGTETQEAAETQAPTADPIID 243

Query: 313  QGPSKRTKY 287
            QGP+KR K+
Sbjct: 244  QGPAKRMKF 252


>ref|XP_002331927.1| predicted protein [Populus trichocarpa] gi|222874599|gb|EEF11730.1|
           predicted protein [Populus trichocarpa]
          Length = 235

 Score =  348 bits (892), Expect = 2e-93
 Identities = 177/230 (76%), Positives = 194/230 (84%), Gaps = 2/230 (0%)
 Frame = -3

Query: 970 PGTDMTGICFRDQLWLNSYPLDRNLVFDYFALSPFYDFSCNNEQLRVRSIHPLDISHLSK 791
           PGTDMTGICFRDQLWLN+YPLDRNLVFDYFALSPFYD++CNNEQLR +SIHPLD+SHL K
Sbjct: 6   PGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRSQSIHPLDLSHLLK 65

Query: 790 MTGIEYTLSEVMEPHLFVFRKQKRDTAEKVTPMLTYYVLDGSIYQAPQLCNVFAARIGRA 611
           MTG EY LSEVMEPHLFVFRKQKRD+AEKVTPMLTYYVLDGSIYQAPQLC+VFAAR+GRA
Sbjct: 66  MTGTEYMLSEVMEPHLFVFRKQKRDSAEKVTPMLTYYVLDGSIYQAPQLCSVFAARVGRA 125

Query: 610 LYHISKSFTTAASKLEKIGFVDGESETATLEPKVAKESIDFKEVKRVDHILASLQRKL-G 434
           LY+ISK+F TAASKLEKIG+VD E+E A  E K  KE IDFKEVKR+DHILASLQRKL  
Sbjct: 126 LYYISKAFGTAASKLEKIGYVDSENEGAASESKTGKEVIDFKEVKRIDHILASLQRKLPP 185

Query: 433 XXXXXXXXXXXXXXPTSEAEKGSENQQGTETQLP-LDPIIDQGPSKRTKY 287
                         PT+E EKG E QQG E QLP +DPIIDQGP+KR K+
Sbjct: 186 APPPPSFPEGYVPQPTTEEEKGPETQQGGEPQLPSVDPIIDQGPAKRMKF 235