BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00016914
         (252 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat...    96   4e-18
ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat...    84   2e-14
ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat...    80   2e-13
ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat...    80   2e-13
ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago t...    79   4e-13

>ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 40/65 (61%), Positives = 55/65 (84%)
 Frame = +3

Query: 57  VLSAGLDFDVFVKTSLLCIYARCGCLNEAHRLFNEMPTRNVVSWTAIISGYIKAGRFSEA 236
           V+  G D DVFVKTSL+C+YA+CG L +AH++F+++P +NVVSWTAIISGYI  G+F EA
Sbjct: 138 VVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREA 197

Query: 237 VDLFK 251
           +D+F+
Sbjct: 198 IDMFR 202



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 28/64 (43%), Positives = 44/64 (68%)
 Frame = +3

Query: 57  VLSAGLDFDVFVKTSLLCIYARCGCLNEAHRLFNEMPTRNVVSWTAIISGYIKAGRFSEA 236
           ++  G+  +VFV TSL+ +YA+CG + +A  +F+ MP +++VSW A+I GY   G   EA
Sbjct: 239 IMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEA 298

Query: 237 VDLF 248
           +DLF
Sbjct: 299 IDLF 302


>ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 38/70 (54%), Positives = 54/70 (77%)
 Frame = +3

Query: 42  SLDFDVLSAGLDFDVFVKTSLLCIYARCGCLNEAHRLFNEMPTRNVVSWTAIISGYIKAG 221
           SL   V+  G D+DVFVKT L+C+Y++ G L +A ++F+E+P +NVVSWTAII GYI++G
Sbjct: 123 SLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESG 182

Query: 222 RFSEAVDLFK 251
            F EA+ LF+
Sbjct: 183 CFGEALGLFR 192



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 27/56 (48%), Positives = 40/56 (71%)
 Frame = +3

Query: 81  DVFVKTSLLCIYARCGCLNEAHRLFNEMPTRNVVSWTAIISGYIKAGRFSEAVDLF 248
           +VFV TSL+ +YA+CG + EA R+F+ M  ++VV W+A+I GY   G   EA+D+F
Sbjct: 237 NVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVF 292


>ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 35/65 (53%), Positives = 50/65 (76%)
 Frame = +3

Query: 57  VLSAGLDFDVFVKTSLLCIYARCGCLNEAHRLFNEMPTRNVVSWTAIISGYIKAGRFSEA 236
           ++ AG D DVFVKTSLL +Y +C   ++A ++F+++P +NVVSWTAII+GYI +G F EA
Sbjct: 140 LVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREA 199

Query: 237 VDLFK 251
           +  FK
Sbjct: 200 IGAFK 204



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 28/68 (41%), Positives = 45/68 (66%)
 Frame = +3

Query: 45  LDFDVLSAGLDFDVFVKTSLLCIYARCGCLNEAHRLFNEMPTRNVVSWTAIISGYIKAGR 224
           +D  +  +G+  +VFV TSLL +Y +CG L  A+ +F+ MP +++VSW+ +I GY   G 
Sbjct: 237 IDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGL 296

Query: 225 FSEAVDLF 248
             +A+DLF
Sbjct: 297 PQQALDLF 304


>ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 35/65 (53%), Positives = 50/65 (76%)
 Frame = +3

Query: 57  VLSAGLDFDVFVKTSLLCIYARCGCLNEAHRLFNEMPTRNVVSWTAIISGYIKAGRFSEA 236
           ++ AG D DVFVKTSLL +Y +C   ++A ++F+++P +NVVSWTAII+GYI +G F EA
Sbjct: 140 LVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREA 199

Query: 237 VDLFK 251
           +  FK
Sbjct: 200 IGAFK 204



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 28/68 (41%), Positives = 45/68 (66%)
 Frame = +3

Query: 45  LDFDVLSAGLDFDVFVKTSLLCIYARCGCLNEAHRLFNEMPTRNVVSWTAIISGYIKAGR 224
           +D  +  +G+  +VFV TSLL +Y +CG L  A+ +F+ MP +++VSW+ +I GY   G 
Sbjct: 237 IDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGL 296

Query: 225 FSEAVDLF 248
             +A+DLF
Sbjct: 297 PQQALDLF 304


>ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355486292|gb|AES67495.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 678

 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 34/65 (52%), Positives = 49/65 (75%)
 Frame = +3

Query: 57  VLSAGLDFDVFVKTSLLCIYARCGCLNEAHRLFNEMPTRNVVSWTAIISGYIKAGRFSEA 236
           V   G D DVFVKT+++C Y++CG L +A ++F++M  +NVVSWT +I G I+ G+F EA
Sbjct: 130 VFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREA 189

Query: 237 VDLFK 251
           VDLF+
Sbjct: 190 VDLFR 194



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 27/68 (39%), Positives = 43/68 (63%)
 Frame = +3

Query: 45  LDFDVLSAGLDFDVFVKTSLLCIYARCGCLNEAHRLFNEMPTRNVVSWTAIISGYIKAGR 224
           +D  +   GL  +VFV TSL+ +Y +CG + EA  +F+ M  +++V W+A+I GY   G 
Sbjct: 227 IDRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGL 286

Query: 225 FSEAVDLF 248
             EA++LF
Sbjct: 287 PREAIELF 294