BLASTX nr result
ID: Coptis23_contig00016899
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00016899
(1724 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002274904.1| PREDICTED: pentatricopeptide repeat-containi... 692 0.0
emb|CAN74604.1| hypothetical protein VITISV_025315 [Vitis vinifera] 691 0.0
ref|XP_002519315.1| pentatricopeptide repeat-containing protein,... 682 0.0
ref|XP_002316075.1| predicted protein [Populus trichocarpa] gi|2... 671 0.0
ref|XP_004138596.1| PREDICTED: pentatricopeptide repeat-containi... 667 0.0
>ref|XP_002274904.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic [Vitis vinifera]
Length = 498
Score = 692 bits (1787), Expect = 0.0
Identities = 341/428 (79%), Positives = 371/428 (86%)
Frame = +2
Query: 11 KKRHWKQGEFPGKLDPSLSRSPRRGPIKNIXXXXXXXXXXXXWVNTVTEALSDRILKKQW 190
KKR WKQGEFPG S R+ PIKNI W NTV EALSD +LKKQW
Sbjct: 68 KKRLWKQGEFPGT---SAEGRSRKTPIKNIKKKLDRKNDAKAWANTVAEALSDLVLKKQW 124
Query: 191 QDALQVFEMLKEQPFYSPKQGTYMKLLVLLGKCRQPYRARKLFDEMLEECCEPTSELYTA 370
AL+VFEML+EQPFY PK+GTYMKLLVLLGK QP RA +LFD M+EE CEPT+ELYTA
Sbjct: 125 LQALEVFEMLREQPFYQPKEGTYMKLLVLLGKSGQPLRAHELFDTMVEEGCEPTTELYTA 184
Query: 371 LLASYCRNNLVDEAFAVLDEMKTLPQCQPDVFTYSTLIKVCVDECRFELVDSLYGEMAER 550
LLASYCR+NL+DEAF++L++MKTLP+CQPDVFTYSTL+K CVD RFELV+SLY EM R
Sbjct: 185 LLASYCRSNLIDEAFSILNQMKTLPRCQPDVFTYSTLLKACVDASRFELVESLYEEMDVR 244
Query: 551 LITPNTVTQNIVLNGYGKAGKFDQMEKVLSGMLESTECKPDVWTMNTILSLFGNKGQIEI 730
ITPNTVTQNIVL+GYGKAGKFD+MEKVLSGMLEST KPDVWTMNTILSLFGNKGQIEI
Sbjct: 245 SITPNTVTQNIVLSGYGKAGKFDEMEKVLSGMLESTSSKPDVWTMNTILSLFGNKGQIEI 304
Query: 731 MEKWYEKFRSFGIEPETRTFNILIGAYGKKRLYDKMSSVMEYMRKLSFPWTTSTYNNVIE 910
MEKWYEKFR+FGIEPETRTFNILIGAYGKKR+YDKMSSVMEYMRKL FPWTTSTYNNVIE
Sbjct: 305 MEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIE 364
Query: 911 AFADVGDAKNMEYTFDQMRSERMRMDTKTLCCLIRGYGNAGMFHKVVSSVQLAEKLEIPE 1090
AF+DVGDAKNMEYTFDQMR+E M+ DTKT CCLIRGY NAG+FHKVVSSVQLA K EIPE
Sbjct: 365 AFSDVGDAKNMEYTFDQMRAEGMKADTKTFCCLIRGYANAGLFHKVVSSVQLAGKFEIPE 424
Query: 1091 NTSFYNAVLSACAKAEDLIEMERVFKRMKDKLCAPDSTTHSIMIEAYRKEGMNDKIYDLE 1270
NTSFYNAV+SACAKAEDLIEMERVF RMKDK C PDSTT+SIM+EAY+KEGMNDKIYDLE
Sbjct: 425 NTSFYNAVISACAKAEDLIEMERVFNRMKDKHCQPDSTTYSIMVEAYKKEGMNDKIYDLE 484
Query: 1271 QENLNVVA 1294
QE +VA
Sbjct: 485 QERQRMVA 492
>emb|CAN74604.1| hypothetical protein VITISV_025315 [Vitis vinifera]
Length = 525
Score = 691 bits (1784), Expect = 0.0
Identities = 340/429 (79%), Positives = 371/429 (86%)
Frame = +2
Query: 11 KKRHWKQGEFPGKLDPSLSRSPRRGPIKNIXXXXXXXXXXXXWVNTVTEALSDRILKKQW 190
KKR WKQGEFPG S R+ PIKNI W NTV EALSD +LKKQW
Sbjct: 68 KKRLWKQGEFPGT---SAEGRSRKTPIKNIKKKLDRKNDAKAWANTVAEALSDLVLKKQW 124
Query: 191 QDALQVFEMLKEQPFYSPKQGTYMKLLVLLGKCRQPYRARKLFDEMLEECCEPTSELYTA 370
AL+VFEML+EQPFY PK+GTYMKLLVLLGK QP RA +LFD M+EE CEPT+ELYTA
Sbjct: 125 LQALEVFEMLREQPFYQPKEGTYMKLLVLLGKSGQPLRAHELFDTMVEEGCEPTTELYTA 184
Query: 371 LLASYCRNNLVDEAFAVLDEMKTLPQCQPDVFTYSTLIKVCVDECRFELVDSLYGEMAER 550
LLASYCR+NL+DEAF++L++MKTLP+CQPDVFTYSTL+K CVD RFELV+SLY EM R
Sbjct: 185 LLASYCRSNLIDEAFSILNQMKTLPRCQPDVFTYSTLLKACVDASRFELVESLYEEMDVR 244
Query: 551 LITPNTVTQNIVLNGYGKAGKFDQMEKVLSGMLESTECKPDVWTMNTILSLFGNKGQIEI 730
ITPNTVTQNIVL+GYGKAGKFD+MEKVLSGMLEST KPDVWTMNTILSLFGNKGQIEI
Sbjct: 245 SITPNTVTQNIVLSGYGKAGKFDEMEKVLSGMLESTSSKPDVWTMNTILSLFGNKGQIEI 304
Query: 731 MEKWYEKFRSFGIEPETRTFNILIGAYGKKRLYDKMSSVMEYMRKLSFPWTTSTYNNVIE 910
MEKWYEKFR+FGIEPETRTFNILIGAYGKKR+YDKMSSVMEYMRKL FPWTTSTYNNVIE
Sbjct: 305 MEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIE 364
Query: 911 AFADVGDAKNMEYTFDQMRSERMRMDTKTLCCLIRGYGNAGMFHKVVSSVQLAEKLEIPE 1090
AF+DVGDAKNMEYTFDQMR+E M+ DTKT CCLIRGY NAG+FHKVVSSVQLA K EIPE
Sbjct: 365 AFSDVGDAKNMEYTFDQMRAEGMKADTKTFCCLIRGYANAGLFHKVVSSVQLAGKFEIPE 424
Query: 1091 NTSFYNAVLSACAKAEDLIEMERVFKRMKDKLCAPDSTTHSIMIEAYRKEGMNDKIYDLE 1270
NTSFYNAV+SACAKAEDLIEMERVF RMKDK C PDSTT+SIM+EAY+KEGMNDKIYDLE
Sbjct: 425 NTSFYNAVISACAKAEDLIEMERVFNRMKDKHCQPDSTTYSIMVEAYKKEGMNDKIYDLE 484
Query: 1271 QENLNVVAS 1297
QE ++ S
Sbjct: 485 QERQRMMCS 493
>ref|XP_002519315.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223541630|gb|EEF43179.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 491
Score = 682 bits (1761), Expect = 0.0
Identities = 330/428 (77%), Positives = 371/428 (86%)
Frame = +2
Query: 11 KKRHWKQGEFPGKLDPSLSRSPRRGPIKNIXXXXXXXXXXXXWVNTVTEALSDRILKKQW 190
KK+HWKQGEFPG + S PRR PIKNI WVNTVTEALSDRILKKQW
Sbjct: 54 KKKHWKQGEFPGFTETS---PPRRTPIKNIKKKLDRKNKAKAWVNTVTEALSDRILKKQW 110
Query: 191 QDALQVFEMLKEQPFYSPKQGTYMKLLVLLGKCRQPYRARKLFDEMLEECCEPTSELYTA 370
AL+VFEMLKEQPFY PK+GTYMKLLVLLG+ QP RA +LFDEM+EE EPT+ELYTA
Sbjct: 111 FQALEVFEMLKEQPFYHPKEGTYMKLLVLLGRTGQPQRAHQLFDEMVEEGIEPTAELYTA 170
Query: 371 LLASYCRNNLVDEAFAVLDEMKTLPQCQPDVFTYSTLIKVCVDECRFELVDSLYGEMAER 550
LLA+YCRN+L DEAF++L +MKTLP+C PDV+TYSTL+K CVD RFELV++LY EM ER
Sbjct: 171 LLAAYCRNHLTDEAFSILQQMKTLPRCLPDVYTYSTLLKACVDASRFELVEALYQEMGER 230
Query: 551 LITPNTVTQNIVLNGYGKAGKFDQMEKVLSGMLESTECKPDVWTMNTILSLFGNKGQIEI 730
LITPNTVTQNIVL+GYGKAG +DQME+VLSGMLESTECKPDVWTMN ILS+FGNKGQI++
Sbjct: 231 LITPNTVTQNIVLSGYGKAGMYDQMERVLSGMLESTECKPDVWTMNIILSVFGNKGQIDL 290
Query: 731 MEKWYEKFRSFGIEPETRTFNILIGAYGKKRLYDKMSSVMEYMRKLSFPWTTSTYNNVIE 910
MEKWYEKFRSFGIEPETRTFNILIGAYGKKR+YDKMSSVME+MRKL FPWTTSTYNNVIE
Sbjct: 291 MEKWYEKFRSFGIEPETRTFNILIGAYGKKRMYDKMSSVMEFMRKLQFPWTTSTYNNVIE 350
Query: 911 AFADVGDAKNMEYTFDQMRSERMRMDTKTLCCLIRGYGNAGMFHKVVSSVQLAEKLEIPE 1090
AFA GD K+MEYTFDQMR+E M+ DTKT CCLI GY NAG+FHKV+SSVQLA K EIPE
Sbjct: 351 AFAVAGDVKHMEYTFDQMRAEGMKADTKTFCCLINGYANAGLFHKVISSVQLATKFEIPE 410
Query: 1091 NTSFYNAVLSACAKAEDLIEMERVFKRMKDKLCAPDSTTHSIMIEAYRKEGMNDKIYDLE 1270
NT+FYNA++SACAKAEDL+EMERVFKRMKD C PDSTT+SIM+EAY++EGMNDK+Y LE
Sbjct: 411 NTTFYNAIISACAKAEDLMEMERVFKRMKDNQCQPDSTTYSIMVEAYKREGMNDKVYYLE 470
Query: 1271 QENLNVVA 1294
QE +VA
Sbjct: 471 QEKQGMVA 478
>ref|XP_002316075.1| predicted protein [Populus trichocarpa] gi|222865115|gb|EEF02246.1|
predicted protein [Populus trichocarpa]
Length = 434
Score = 671 bits (1730), Expect = 0.0
Identities = 319/427 (74%), Positives = 367/427 (85%)
Frame = +2
Query: 11 KKRHWKQGEFPGKLDPSLSRSPRRGPIKNIXXXXXXXXXXXXWVNTVTEALSDRILKKQW 190
KK+HWKQGEFPG D S PRR IKNI WVNTV EAL+D +LKKQW
Sbjct: 11 KKKHWKQGEFPGFTDAS---RPRRTAIKNIKKKLDRKSKAKAWVNTVAEALTDCVLKKQW 67
Query: 191 QDALQVFEMLKEQPFYSPKQGTYMKLLVLLGKCRQPYRARKLFDEMLEECCEPTSELYTA 370
A+QVFEMLKEQPFY PK+ TYMKLLVLLG+C QP RA +LFDEM+EE EPT+ELYTA
Sbjct: 68 LQAIQVFEMLKEQPFYQPKEATYMKLLVLLGRCGQPQRAHQLFDEMVEEGIEPTTELYTA 127
Query: 371 LLASYCRNNLVDEAFAVLDEMKTLPQCQPDVFTYSTLIKVCVDECRFELVDSLYGEMAER 550
LLA+YCRNNL+DE F+++++MK+LP+CQPDV+TYSTL+K CVD RFEL+D+LY EM ER
Sbjct: 128 LLAAYCRNNLIDEGFSIINQMKSLPRCQPDVYTYSTLLKACVDASRFELIDTLYQEMDER 187
Query: 551 LITPNTVTQNIVLNGYGKAGKFDQMEKVLSGMLESTECKPDVWTMNTILSLFGNKGQIEI 730
LI+PNTVTQN+VL+GYG+ G +DQME+VLS MLES CKPDVWTMN ILS+FGN+GQI++
Sbjct: 188 LISPNTVTQNVVLSGYGRVGMYDQMERVLSEMLESAACKPDVWTMNIILSVFGNEGQIDL 247
Query: 731 MEKWYEKFRSFGIEPETRTFNILIGAYGKKRLYDKMSSVMEYMRKLSFPWTTSTYNNVIE 910
ME+WYEKFR+FGIEPETRTFNILIGAYGKKR+YDKMSSVMEYMRK+ FPWTTSTYNNVIE
Sbjct: 248 MERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKVQFPWTTSTYNNVIE 307
Query: 911 AFADVGDAKNMEYTFDQMRSERMRMDTKTLCCLIRGYGNAGMFHKVVSSVQLAEKLEIPE 1090
AFADVGDAKNMEY FDQMR+E M+ DTKT CCLI GY NAG+FHKV+SSVQLA K EIPE
Sbjct: 308 AFADVGDAKNMEYAFDQMRAESMKADTKTFCCLINGYANAGLFHKVISSVQLAAKFEIPE 367
Query: 1091 NTSFYNAVLSACAKAEDLIEMERVFKRMKDKLCAPDSTTHSIMIEAYRKEGMNDKIYDLE 1270
NTSF+NAV+SACAKA+DL+EMERVFKRMKDK C PDS T+SIM+EAYRKEGMNDKIY LE
Sbjct: 368 NTSFFNAVISACAKADDLMEMERVFKRMKDKQCPPDSRTYSIMVEAYRKEGMNDKIYYLE 427
Query: 1271 QENLNVV 1291
QE ++
Sbjct: 428 QEKQEMI 434
>ref|XP_004138596.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Cucumis sativus]
gi|449522692|ref|XP_004168360.1| PREDICTED:
pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Cucumis sativus]
Length = 496
Score = 667 bits (1722), Expect = 0.0
Identities = 321/434 (73%), Positives = 370/434 (85%)
Frame = +2
Query: 11 KKRHWKQGEFPGKLDPSLSRSPRRGPIKNIXXXXXXXXXXXXWVNTVTEALSDRILKKQW 190
KKRHWKQGEFPG + S + RR P+K + W NTVTEALSD I K+W
Sbjct: 66 KKRHWKQGEFPGTTETS---TRRRAPLKRVKKKLDRKNNAKAWANTVTEALSDHITNKRW 122
Query: 191 QDALQVFEMLKEQPFYSPKQGTYMKLLVLLGKCRQPYRARKLFDEMLEECCEPTSELYTA 370
AL+VFEML+EQPFY PK+GTYMKLLVLLG+ QP+RAR LFD M++E CEPT ELYTA
Sbjct: 123 LQALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPHRARLLFDTMVQERCEPTPELYTA 182
Query: 371 LLASYCRNNLVDEAFAVLDEMKTLPQCQPDVFTYSTLIKVCVDECRFELVDSLYGEMAER 550
LLA+YCRNNL+D+AF+ L+ MKTLP+CQPDV+TYS LIK CVD+ RFE+V+SLY EMAER
Sbjct: 183 LLAAYCRNNLIDDAFSTLNLMKTLPRCQPDVYTYSILIKACVDDSRFEIVESLYEEMAER 242
Query: 551 LITPNTVTQNIVLNGYGKAGKFDQMEKVLSGMLESTECKPDVWTMNTILSLFGNKGQIEI 730
LITPNTVTQNIVL+GYGK GK+DQMEKVL GMLEST C+PDVWTMN ILS+FGNKG IE+
Sbjct: 243 LITPNTVTQNIVLSGYGKIGKYDQMEKVLIGMLESTTCRPDVWTMNIILSVFGNKGHIEM 302
Query: 731 MEKWYEKFRSFGIEPETRTFNILIGAYGKKRLYDKMSSVMEYMRKLSFPWTTSTYNNVIE 910
ME+WYEKFR+FGIEPETRTFNILIGAYGKKR+YDKMSSVMEYMRKL FPWTTSTYNNVIE
Sbjct: 303 MERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIE 362
Query: 911 AFADVGDAKNMEYTFDQMRSERMRMDTKTLCCLIRGYGNAGMFHKVVSSVQLAEKLEIPE 1090
AFADVGDAKNMEYTF+QMR+E MR DTKT CCLI GY NAG+FHKV+ SV+LA KLEIPE
Sbjct: 363 AFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVIGSVKLAGKLEIPE 422
Query: 1091 NTSFYNAVLSACAKAEDLIEMERVFKRMKDKLCAPDSTTHSIMIEAYRKEGMNDKIYDLE 1270
NTSFYNAV+SACAKAEDL+EM+RVFKRMKDK C PD+ T+SIM+EAY KEGMND+++ LE
Sbjct: 423 NTSFYNAVISACAKAEDLMEMDRVFKRMKDKHCQPDNKTYSIMMEAYGKEGMNDRVHYLE 482
Query: 1271 QENLNVVASSLDSE 1312
E V+ ++ ++E
Sbjct: 483 LEKKQVIDNASNNE 496