BLASTX nr result

ID: Coptis23_contig00016877 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00016877
         (492 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281293.1| PREDICTED: uncharacterized protein LOC100253...    65   6e-09
ref|XP_002283133.1| PREDICTED: uncharacterized protein LOC100258...    59   4e-07
ref|XP_004166180.1| PREDICTED: uncharacterized LOC101213465 [Cuc...    55   5e-06

>ref|XP_002281293.1| PREDICTED: uncharacterized protein LOC100253416 [Vitis vinifera]
           gi|147789234|emb|CAN78011.1| hypothetical protein
           VITISV_041419 [Vitis vinifera]
           gi|297739334|emb|CBI28985.3| unnamed protein product
           [Vitis vinifera]
          Length = 116

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 48/129 (37%), Positives = 68/129 (52%), Gaps = 1/129 (0%)
 Frame = +3

Query: 108 MKKFLKCISCCVPIKRSVVPTSPTHKEEGHGLSPLYFAEGDSLACIKRGKLGSGRVHWRP 287
           MK F +  SCC    R+  P   T    G  L+ +    G   +  +R    SG+  WRP
Sbjct: 1   MKFFSELGSCC----RAPAPEPETEVSSGL-LTNVGRVSGPKSSTKRRS---SGQ--WRP 50

Query: 288 SLCVISEDNVVSTVSNKAERMVKSGKNLAEKARSRGRIRSCDRSSDN-EFRRTSTPVVIP 464
            L +ISED V S    + ER+  S K  +++  SRGR+R   R+SD+ E+ +    ++IP
Sbjct: 51  GLSMISEDGVASAAERRRERVAGSEKKASQEGGSRGRVR---RTSDSEEYSKLQLQMIIP 107

Query: 465 AFSPTGFLF 491
           AFSPT FLF
Sbjct: 108 AFSPTPFLF 116


>ref|XP_002283133.1| PREDICTED: uncharacterized protein LOC100258992 [Vitis vinifera]
          Length = 120

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 43/133 (32%), Positives = 62/133 (46%), Gaps = 5/133 (3%)
 Frame = +3

Query: 108 MKKFLKCISCCVPIKRSVVPTSPTHKEEGHGLSPLYFAEGDSLACIKRGKLGSGR----- 272
           MK   + +SCC    R  VP      EE   +        +     ++ ++GS R     
Sbjct: 1   MKFIFEFVSCCGMPPRPAVPEEVPLPEESRTV--------ELRRRYRKERVGSSRSSSSS 52

Query: 273 VHWRPSLCVISEDNVVSTVSNKAERMVKSGKNLAEKARSRGRIRSCDRSSDNEFRRTSTP 452
           V W PSLC ISEDN+   V  K ER  +S +    KA S  +I    RS + ++RR+   
Sbjct: 53  VEWHPSLCSISEDNL---VLEKEERPAESERTPKRKAASSTKIHV--RSYNEDYRRSQIS 107

Query: 453 VVIPAFSPTGFLF 491
           + +P FSP  F+F
Sbjct: 108 MTLPTFSPAPFMF 120


>ref|XP_004166180.1| PREDICTED: uncharacterized LOC101213465 [Cucumis sativus]
          Length = 143

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 48/146 (32%), Positives = 70/146 (47%), Gaps = 18/146 (12%)
 Frame = +3

Query: 108 MKKFLKCISCCVPIKRSVVP----TSPTHKEEGHGLSPLYFAEG-----DSLACIKRGKL 260
           MK   + +SCCVP+  S +     T     +E   L P+   +       +L      KL
Sbjct: 1   MKFLFEFVSCCVPVNMSRIDNPEETEAAGSKEMRSLPPITTRKHRRRKRSALLPSAAAKL 60

Query: 261 GSGRVHWRPSLCVISEDNVVSTVSNKA---ERMVKSGKNLAEKARSR-GRIRSCD-RSSD 425
            +    W+PSL  ISED VV  V  +    E+  +  +++  K+RSR G  R    R++ 
Sbjct: 61  AAD---WKPSLGAISEDKVVLVVMEREKSDEQTTELERSVKRKSRSRDGESRGVHGRNNS 117

Query: 426 NEFRR----TSTPVVIPAFSPTGFLF 491
           N+F      ++ PVVIPAFSP  FLF
Sbjct: 118 NDFSLRQSPSAIPVVIPAFSPAPFLF 143


Top