BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00016869
         (265 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    93   2e-17
ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containi...    93   2e-17
ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containi...    82   3e-14
ref|XP_003596872.1| Pentatricopeptide repeat-containing protein ...    77   1e-12
gb|ABD32771.1| Tetratricopeptide-like helical [Medicago truncatula]    77   1e-12

>ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05750, chloroplastic-like [Cucumis sativus]
          Length = 525

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 49/99 (49%), Positives = 58/99 (58%), Gaps = 11/99 (11%)
 Frame = +2

Query: 2   LPTSNPNTVNQSRL-----------LIQRKLDQTVLWTCSITHYCKKGMLFEAASEFTRM 148
           +P SNP  +N  R                 +D  VLWT S+  YC+ G L EAA+EFTRM
Sbjct: 24  IPLSNPTKLNFPRSPNSPHRNISSKFNPNSVDPIVLWTSSLARYCRNGQLSEAAAEFTRM 83

Query: 149 RLAGNEPNDITFVTLLSGCAHFPSKSHHFGVSIHGNVSK 265
           RLAG EPN ITF+TLLS CA FPS+S  F  S+HG   K
Sbjct: 84  RLAGVEPNHITFITLLSACADFPSESFFFASSLHGYACK 122


>ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Cucumis sativus]
          Length = 525

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 49/99 (49%), Positives = 58/99 (58%), Gaps = 11/99 (11%)
 Frame = +2

Query: 2   LPTSNPNTVNQSRL-----------LIQRKLDQTVLWTCSITHYCKKGMLFEAASEFTRM 148
           +P SNP  +N  R                 +D  VLWT S+  YC+ G L EAA+EFTRM
Sbjct: 24  IPLSNPTKLNFPRSPNSPHRNISSKFNPNSVDPIVLWTSSLARYCRNGQLSEAAAEFTRM 83

Query: 149 RLAGNEPNDITFVTLLSGCAHFPSKSHHFGVSIHGNVSK 265
           RLAG EPN ITF+TLLS CA FPS+S  F  S+HG   K
Sbjct: 84  RLAGVEPNHITFITLLSACADFPSESFFFASSLHGYACK 122


>ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Glycine max]
          Length = 521

 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 45/89 (50%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
 Frame = +2

Query: 11  SNPNTVNQSRLLIQRKL---DQTVLWTCSITHYCKKGMLFEAASEFTRMRLAGNEPNDIT 181
           SN NT     L ++      D  V WT SI  YCK G L +AAS+F +MR A  EPN IT
Sbjct: 34  SNTNTNTNQGLSLRHTTKYNDPIVSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHIT 93

Query: 182 FVTLLSGCAHFPSKSH-HFGVSIHGNVSK 265
           F+TLLS CAH+PS+S   FG +IH +V K
Sbjct: 94  FITLLSACAHYPSRSSISFGTAIHAHVRK 122


>ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|87240903|gb|ABD32761.1| Tetratricopeptide-like
           helical [Medicago truncatula]
           gi|355485920|gb|AES67123.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 517

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 42/88 (47%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
 Frame = +2

Query: 5   PTSNPNTVNQSRLLIQRKLDQTVLWTCSITHYCKKGMLFEAASEFTRMRLAGNEPNDITF 184
           P +NPN      L  +   +QTV WT SI+H+CK     +AASEF +M  A  EPN IT 
Sbjct: 31  PPNNPNKNQTLSLKHKPNSNQTVSWTSSISHHCKNNNFLKAASEFIQMLEAEVEPNHITL 90

Query: 185 VTLLSGCAHFPSK-SHHFGVSIHGNVSK 265
           +TLLS CAH PSK S  FG ++H +  K
Sbjct: 91  ITLLSACAHSPSKTSITFGAALHTHAFK 118


>gb|ABD32771.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 497

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 42/88 (47%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
 Frame = +2

Query: 5   PTSNPNTVNQSRLLIQRKLDQTVLWTCSITHYCKKGMLFEAASEFTRMRLAGNEPNDITF 184
           P +NPN      L  +   +QTV WT SI+H+CK     +AASEF +M  A  EPN IT 
Sbjct: 31  PPNNPNKNQTLSLKHKPNSNQTVSWTSSISHHCKNNNFLKAASEFIQMLEAEVEPNHITL 90

Query: 185 VTLLSGCAHFPSK-SHHFGVSIHGNVSK 265
           +TLLS CAH PSK S  FG ++H +  K
Sbjct: 91  ITLLSACAHSPSKTSITFGAALHTHAFK 118