BLASTX nr result

ID: Coptis23_contig00016868 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00016868
         (763 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAJ88788.1| predicted protein [Hordeum vulgare subsp. vulgare]    141   2e-31
ref|NP_001057465.1| Os06g0304500 [Oryza sativa Japonica Group] g...   140   2e-31
ref|XP_002524660.1| conserved hypothetical protein [Ricinus comm...   139   7e-31
ref|XP_004155504.1| PREDICTED: uncharacterized CRM domain-contai...   138   1e-30
ref|XP_004136868.1| PREDICTED: uncharacterized CRM domain-contai...   138   1e-30

>dbj|BAJ88788.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 340

 Score =  141 bits (355), Expect = 2e-31
 Identities = 71/102 (69%), Positives = 80/102 (78%), Gaps = 4/102 (3%)
 Frame = +2

Query: 128 RPGQIPEYAEELTRLSKGTVIDIKSNNTIIFYRGKNYVQPKVMSPPDTLSKNKALEKSKY 307
           RPGQ+ EYAEEL RLSKGTVIDIK NNTIIFYRGKNYVQPKVMSPPDTLSK KALEK +Y
Sbjct: 225 RPGQVYEYAEELARLSKGTVIDIKPNNTIIFYRGKNYVQPKVMSPPDTLSKQKALEKYRY 284

Query: 308 KQSLEHTSQFIXXXXXXXXXYRKHIERYKK----NKEAVSND 421
           +QSLEHTS+FI         Y+KH+  +KK    N E +SN+
Sbjct: 285 EQSLEHTSKFIEQLEQELEDYQKHVALFKKREGANSEQISNE 326


>ref|NP_001057465.1| Os06g0304500 [Oryza sativa Japonica Group]
           gi|113595505|dbj|BAF19379.1| Os06g0304500 [Oryza sativa
           Japonica Group] gi|125596971|gb|EAZ36751.1| hypothetical
           protein OsJ_21087 [Oryza sativa Japonica Group]
          Length = 348

 Score =  140 bits (354), Expect = 2e-31
 Identities = 70/99 (70%), Positives = 77/99 (77%)
 Frame = +2

Query: 128 RPGQIPEYAEELTRLSKGTVIDIKSNNTIIFYRGKNYVQPKVMSPPDTLSKNKALEKSKY 307
           RPGQ+ EYAEELTRLSKGTVIDIK NNTIIFYRGKNYVQPKVMSPPDTLSK KALEK +Y
Sbjct: 234 RPGQVYEYAEELTRLSKGTVIDIKPNNTIIFYRGKNYVQPKVMSPPDTLSKQKALEKYRY 293

Query: 308 KQSLEHTSQFIXXXXXXXXXYRKHIERYKKNKEAVSNDS 424
           +QSLEHTSQFI         Y+KH+  +K   E +   S
Sbjct: 294 EQSLEHTSQFIEKLEKELEDYQKHVALFKNRGETLETIS 332


>ref|XP_002524660.1| conserved hypothetical protein [Ricinus communis]
           gi|223536021|gb|EEF37679.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 260

 Score =  139 bits (350), Expect = 7e-31
 Identities = 68/95 (71%), Positives = 76/95 (80%)
 Frame = +2

Query: 128 RPGQIPEYAEELTRLSKGTVIDIKSNNTIIFYRGKNYVQPKVMSPPDTLSKNKALEKSKY 307
           +PGQI +YAEEL RLSKG VIDI+ NN+IIFYRGKNYVQP VMSPPDTLSKNKALEK KY
Sbjct: 158 KPGQIHQYAEELARLSKGIVIDIRPNNSIIFYRGKNYVQPTVMSPPDTLSKNKALEKYKY 217

Query: 308 KQSLEHTSQFIXXXXXXXXXYRKHIERYKKNKEAV 412
           +QSLEHTSQFI         Y +H+ RYKK KE +
Sbjct: 218 EQSLEHTSQFIEKLEKELEEYLEHVARYKKGKEGL 252


>ref|XP_004155504.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
           chloroplastic-like [Cucumis sativus]
          Length = 290

 Score =  138 bits (348), Expect = 1e-30
 Identities = 67/102 (65%), Positives = 83/102 (81%)
 Frame = +2

Query: 128 RPGQIPEYAEELTRLSKGTVIDIKSNNTIIFYRGKNYVQPKVMSPPDTLSKNKALEKSKY 307
           +PGQ+ EYAEELTRLSKG VIDIK NN+IIFYRGKNYVQP+VMSPP+TLSK+KALEK KY
Sbjct: 188 KPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNTLSKDKALEKYKY 247

Query: 308 KQSLEHTSQFIXXXXXXXXXYRKHIERYKKNKEAVSNDSRVS 433
           +QSLEHTSQFI         ++KH+ ++K+ KE  + +S V+
Sbjct: 248 EQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDAALESMVN 289


>ref|XP_004136868.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
           chloroplastic-like [Cucumis sativus]
          Length = 352

 Score =  138 bits (348), Expect = 1e-30
 Identities = 67/102 (65%), Positives = 83/102 (81%)
 Frame = +2

Query: 128 RPGQIPEYAEELTRLSKGTVIDIKSNNTIIFYRGKNYVQPKVMSPPDTLSKNKALEKSKY 307
           +PGQ+ EYAEELTRLSKG VIDIK NN+IIFYRGKNYVQP+VMSPP+TLSK+KALEK KY
Sbjct: 250 KPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQPEVMSPPNTLSKDKALEKYKY 309

Query: 308 KQSLEHTSQFIXXXXXXXXXYRKHIERYKKNKEAVSNDSRVS 433
           +QSLEHTSQFI         ++KH+ ++K+ KE  + +S V+
Sbjct: 310 EQSLEHTSQFIEKLEKELEDFQKHLAQFKRRKEDAALESMVN 351


Top