BLASTX nr result
ID: Coptis23_contig00016860
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00016860
(755 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002275897.1| PREDICTED: pentatricopeptide repeat-containi... 257 2e-66
emb|CAN65544.1| hypothetical protein VITISV_018576 [Vitis vinifera] 257 2e-66
ref|XP_004156247.1| PREDICTED: pentatricopeptide repeat-containi... 243 4e-62
ref|XP_004141633.1| PREDICTED: pentatricopeptide repeat-containi... 243 4e-62
ref|XP_002528029.1| pentatricopeptide repeat-containing protein,... 241 2e-61
>ref|XP_002275897.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
chloroplastic-like [Vitis vinifera]
Length = 725
Score = 257 bits (657), Expect = 2e-66
Identities = 117/203 (57%), Positives = 163/203 (80%)
Frame = +3
Query: 3 RNVISWTAMIESFLKNQCLDEALVVFRSMQLSKHRPDPVTMSRILRVCGDMGELKFGKEV 182
RNVISWTAMI+S+++N CL EA+ VFRSMQLSKHRPD V M+RIL +CG++ LK GKE+
Sbjct: 521 RNVISWTAMIDSYVENGCLHEAVGVFRSMQLSKHRPDSVAMARILSICGELRVLKLGKEI 580
Query: 183 HGHVLRRDFVSVPFVSAEIVKMYGNSGEIEKAKLVFDTNPSKGSMTWTALIEAYGHNNRH 362
HG +L++DF S+PFVSAEI+KMYG G I KAKL F P+KGSM WTA+IEAYG+N+ +
Sbjct: 581 HGQILKKDFESIPFVSAEIIKMYGKFGAISKAKLAFKAIPAKGSMAWTAIIEAYGYNDLY 640
Query: 363 QDALDLYDLMITNGFKPNHFTFQVVLSICDKAGFVNEACQIFDSMAKRYNVKPSEEHFNS 542
QDA++L+ M ++GF PNH+TF+ VLSIC++A ++AC IF+ M++RY +K S EH++S
Sbjct: 641 QDAINLFHQMQSDGFIPNHYTFKAVLSICERAELADDACLIFNLMSRRYRIKASNEHYSS 700
Query: 543 IIELLTRLQFADEVLRYVRLKSS 611
IIELL R+ ++ R+++++S+
Sbjct: 701 IIELLNRVGRTEDAQRFIQMRSA 723
Score = 96.7 bits (239), Expect = 5e-18
Identities = 47/168 (27%), Positives = 92/168 (54%)
Frame = +3
Query: 3 RNVISWTAMIESFLKNQCLDEALVVFRSMQLSKHRPDPVTMSRILRVCGDMGELKFGKEV 182
RN +SWTA++ ++ N LD+AL MQ RPD VT++ +L VC ++ L+ GKE+
Sbjct: 420 RNAVSWTALMSGYVSNGRLDQALRSIAWMQQEGFRPDVVTVATVLPVCAELRALRQGKEI 479
Query: 183 HGHVLRRDFVSVPFVSAEIVKMYGNSGEIEKAKLVFDTNPSKGSMTWTALIEAYGHNNRH 362
H + ++ F+ ++ ++ MY G ++ + +FD ++ ++WTA+I++Y N
Sbjct: 480 HSYAVKNGFLPNVSIATSLMVMYSKCGNLDYSFKLFDGMDARNVISWTAMIDSYVENGCL 539
Query: 363 QDALDLYDLMITNGFKPNHFTFQVVLSICDKAGFVNEACQIFDSMAKR 506
+A+ ++ M + +P+ +LSIC + + +I + K+
Sbjct: 540 HEAVGVFRSMQLSKHRPDSVAMARILSICGELRVLKLGKEIHGQILKK 587
Score = 90.5 bits (223), Expect = 3e-16
Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 1/168 (0%)
Frame = +3
Query: 3 RNVISWTAMIESFLKNQCLDEALVVFRSMQLSKHRPDPVTMSRILRVCGDMGELKFGKEV 182
R+V+ W AMI F N+ EAL R M+ P+ V M+ IL V G++G K G+EV
Sbjct: 318 RDVVVWGAMIAGFGHNRLQREALEYLRWMRREGICPNSVIMTTILPVIGEVGAWKLGREV 377
Query: 183 HGHVLR-RDFVSVPFVSAEIVKMYGNSGEIEKAKLVFDTNPSKGSMTWTALIEAYGHNNR 359
H +V++ + + F+ + ++ MY G++ + VF + + +++WTAL+ Y N R
Sbjct: 378 HAYVVKTKSYSKQVFIQSALIDMYCKCGDMASGRQVFYASTERNAVSWTALMSGYVSNGR 437
Query: 360 HQDALDLYDLMITNGFKPNHFTFQVVLSICDKAGFVNEACQIFDSMAK 503
AL M GF+P+ T VL +C + + + +I K
Sbjct: 438 LDQALRSIAWMQQEGFRPDVVTVATVLPVCAELRALRQGKEIHSYAVK 485
Score = 66.2 bits (160), Expect = 7e-09
Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 2/139 (1%)
Frame = +3
Query: 30 IESFLKNQCLDEALVVFRSMQLSKHRPDPVTMSRILRVCGDMGELKFGKEVHGHVLRRDF 209
I+ F + L EAL + +P T S +LR C + L GK++H H+
Sbjct: 123 IQRFARQGKLKEALTILDYCDQQGIPVNPTTFSSLLRACVESKSLTHGKQIHVHIRINGL 182
Query: 210 VSVPFVSAEIVKMYGNSGEIEKAKLVFDTNPSKGSMTWTALIEAYGHNNR--HQDALDLY 383
+ F+ ++V MY + G +E A+ VFD SK TW AL+ + R +++AL Y
Sbjct: 183 ENNEFLRTKLVHMYTSCGSLEDARGVFDGVSSKSVYTWNALLRGNVISGRRHYREALSTY 242
Query: 384 DLMITNGFKPNHFTFQVVL 440
M G + N ++F ++
Sbjct: 243 SEMRELGVELNVYSFSCMI 261
>emb|CAN65544.1| hypothetical protein VITISV_018576 [Vitis vinifera]
Length = 664
Score = 257 bits (657), Expect = 2e-66
Identities = 117/203 (57%), Positives = 163/203 (80%)
Frame = +3
Query: 3 RNVISWTAMIESFLKNQCLDEALVVFRSMQLSKHRPDPVTMSRILRVCGDMGELKFGKEV 182
RNVISWTAMI+S+++N CL EA+ VFRSMQLSKHRPD V M+RIL +CG++ LK GKE+
Sbjct: 460 RNVISWTAMIDSYVENGCLHEAVGVFRSMQLSKHRPDSVAMARILSICGELRVLKLGKEI 519
Query: 183 HGHVLRRDFVSVPFVSAEIVKMYGNSGEIEKAKLVFDTNPSKGSMTWTALIEAYGHNNRH 362
HG +L++DF S+PFVSAEI+KMYG G I KAKL F P+KGSM WTA+IEAYG+N+ +
Sbjct: 520 HGQILKKDFESIPFVSAEIIKMYGKFGAISKAKLAFKAIPAKGSMAWTAIIEAYGYNDLY 579
Query: 363 QDALDLYDLMITNGFKPNHFTFQVVLSICDKAGFVNEACQIFDSMAKRYNVKPSEEHFNS 542
QDA++L+ M ++GF PNH+TF+ VLSIC++A ++AC IF+ M++RY +K S EH++S
Sbjct: 580 QDAINLFHQMQSDGFIPNHYTFKAVLSICERAELADDACLIFNLMSRRYRIKASNEHYSS 639
Query: 543 IIELLTRLQFADEVLRYVRLKSS 611
IIELL R+ ++ R+++++S+
Sbjct: 640 IIELLNRVGRTEDAQRFIQMRSA 662
Score = 96.7 bits (239), Expect = 5e-18
Identities = 47/168 (27%), Positives = 92/168 (54%)
Frame = +3
Query: 3 RNVISWTAMIESFLKNQCLDEALVVFRSMQLSKHRPDPVTMSRILRVCGDMGELKFGKEV 182
RN +SWTA++ ++ N LD+AL MQ RPD VT++ +L VC ++ L+ GKE+
Sbjct: 359 RNAVSWTALMSGYVSNGRLDQALRSIAWMQQEGFRPDVVTVATVLPVCAELRALRQGKEI 418
Query: 183 HGHVLRRDFVSVPFVSAEIVKMYGNSGEIEKAKLVFDTNPSKGSMTWTALIEAYGHNNRH 362
H + ++ F+ ++ ++ MY G ++ + +FD ++ ++WTA+I++Y N
Sbjct: 419 HSYAVKNGFLPNVSIATSLMVMYSKCGNLDYSFKLFDGMDARNVISWTAMIDSYVENGCL 478
Query: 363 QDALDLYDLMITNGFKPNHFTFQVVLSICDKAGFVNEACQIFDSMAKR 506
+A+ ++ M + +P+ +LSIC + + +I + K+
Sbjct: 479 HEAVGVFRSMQLSKHRPDSVAMARILSICGELRVLKLGKEIHGQILKK 526
Score = 90.5 bits (223), Expect = 3e-16
Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 1/168 (0%)
Frame = +3
Query: 3 RNVISWTAMIESFLKNQCLDEALVVFRSMQLSKHRPDPVTMSRILRVCGDMGELKFGKEV 182
R+V+ W AMI F N+ EAL R M+ P+ V M+ IL V G++G K G+EV
Sbjct: 257 RDVVVWGAMIAGFGHNRLQREALEYLRWMRREGICPNSVIMTTILPVIGEVGAWKLGREV 316
Query: 183 HGHVLR-RDFVSVPFVSAEIVKMYGNSGEIEKAKLVFDTNPSKGSMTWTALIEAYGHNNR 359
H +V++ + + F+ + ++ MY G++ + VF + + +++WTAL+ Y N R
Sbjct: 317 HAYVVKTKSYSKQVFIQSALIDMYCKCGDMASGRQVFYASTERNAVSWTALMSGYVSNGR 376
Query: 360 HQDALDLYDLMITNGFKPNHFTFQVVLSICDKAGFVNEACQIFDSMAK 503
AL M GF+P+ T VL +C + + + +I K
Sbjct: 377 LDQALRSIAWMQQEGFRPDVVTVATVLPVCAELRALRQGKEIHSYAVK 424
>ref|XP_004156247.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
chloroplastic-like [Cucumis sativus]
Length = 716
Score = 243 bits (619), Expect = 4e-62
Identities = 115/196 (58%), Positives = 149/196 (76%)
Frame = +3
Query: 3 RNVISWTAMIESFLKNQCLDEALVVFRSMQLSKHRPDPVTMSRILRVCGDMGELKFGKEV 182
RNVI WTAMI+S+++NQC EA+ +FR+MQLSKHRPD VTMSRIL +C + LK GKE+
Sbjct: 484 RNVILWTAMIDSYIENQCPHEAIDIFRAMQLSKHRPDTVTMSRILYICSEQKMLKMGKEI 543
Query: 183 HGHVLRRDFVSVPFVSAEIVKMYGNSGEIEKAKLVFDTNPSKGSMTWTALIEAYGHNNRH 362
HG VL+R F V FVSAE+VK+YG G ++ AK+VF+ P KG MTWTA+IEAYG +
Sbjct: 544 HGQVLKRKFEPVHFVSAELVKLYGKCGAVKMAKMVFEAIPVKGPMTWTAIIEAYGESGEF 603
Query: 363 QDALDLYDLMITNGFKPNHFTFQVVLSICDKAGFVNEACQIFDSMAKRYNVKPSEEHFNS 542
Q+A+DL+D M + G PNHFTF+VVLSIC +AGFV+EA +IF M+ RY +KPSEEH++
Sbjct: 604 QEAIDLFDRMRSRGISPNHFTFKVVLSICKEAGFVDEALRIFKLMSVRYKIKPSEEHYSL 663
Query: 543 IIELLTRLQFADEVLR 590
+I +LTR +E R
Sbjct: 664 VIAILTRFGRLEEARR 679
Score = 89.0 bits (219), Expect = 1e-15
Identities = 47/168 (27%), Positives = 87/168 (51%)
Frame = +3
Query: 3 RNVISWTAMIESFLKNQCLDEALVVFRSMQLSKHRPDPVTMSRILRVCGDMGELKFGKEV 182
RN I WTA++ + N L++A+ MQ RPD VT++ IL VC + L+ GKE+
Sbjct: 383 RNAICWTALMSGYALNGRLEQAVRSVIWMQQEGFRPDIVTVATILPVCAQLRALRPGKEI 442
Query: 183 HGHVLRRDFVSVPFVSAEIVKMYGNSGEIEKAKLVFDTNPSKGSMTWTALIEAYGHNNRH 362
H + ++ F+ + + ++ MY G ++ +F+ + + WTA+I++Y N
Sbjct: 443 HAYAMKNCFLPNVSIVSSLMVMYSKCGVMDYTLKLFNGMEQRNVILWTAMIDSYIENQCP 502
Query: 363 QDALDLYDLMITNGFKPNHFTFQVVLSICDKAGFVNEACQIFDSMAKR 506
+A+D++ M + +P+ T +L IC + + +I + KR
Sbjct: 503 HEAIDIFRAMQLSKHRPDTVTMSRILYICSEQKMLKMGKEIHGQVLKR 550
Score = 82.8 bits (203), Expect = 7e-14
Identities = 45/150 (30%), Positives = 79/150 (52%), Gaps = 1/150 (0%)
Frame = +3
Query: 3 RNVISWTAMIESFLKNQCLDEALVVFRSMQLSKHRPDPVTMSRILRVCGDMGELKFGKEV 182
R+V+ W ++I F N+ EAL R M RP+ V ++ IL V G++ + G+EV
Sbjct: 281 RDVVVWGSIIAGFAHNRLQREALEYTRRMIDDGIRPNSVILTTILPVIGEIWARRLGQEV 340
Query: 183 HGHVLR-RDFVSVPFVSAEIVKMYGNSGEIEKAKLVFDTNPSKGSMTWTALIEAYGHNNR 359
H +V++ + + F+ + ++ MY G+I + VF + + ++ WTAL+ Y N R
Sbjct: 341 HAYVIKTKSYSKQIFIQSALIDMYCKCGDIGSGRAVFYASMERNAICWTALMSGYALNGR 400
Query: 360 HQDALDLYDLMITNGFKPNHFTFQVVLSIC 449
+ A+ M GF+P+ T +L +C
Sbjct: 401 LEQAVRSVIWMQQEGFRPDIVTVATILPVC 430
>ref|XP_004141633.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
chloroplastic-like [Cucumis sativus]
Length = 696
Score = 243 bits (619), Expect = 4e-62
Identities = 115/196 (58%), Positives = 149/196 (76%)
Frame = +3
Query: 3 RNVISWTAMIESFLKNQCLDEALVVFRSMQLSKHRPDPVTMSRILRVCGDMGELKFGKEV 182
RNVI WTAMI+S+++NQC EA+ +FR+MQLSKHRPD VTMSRIL +C + LK GKE+
Sbjct: 484 RNVILWTAMIDSYIENQCPHEAIDIFRAMQLSKHRPDTVTMSRILYICSEQKMLKMGKEI 543
Query: 183 HGHVLRRDFVSVPFVSAEIVKMYGNSGEIEKAKLVFDTNPSKGSMTWTALIEAYGHNNRH 362
HG VL+R F V FVSAE+VK+YG G ++ AK+VF+ P KG MTWTA+IEAYG +
Sbjct: 544 HGQVLKRKFEPVHFVSAELVKLYGKCGAVKMAKMVFEAIPVKGPMTWTAIIEAYGESGEF 603
Query: 363 QDALDLYDLMITNGFKPNHFTFQVVLSICDKAGFVNEACQIFDSMAKRYNVKPSEEHFNS 542
Q+A+DL+D M + G PNHFTF+VVLSIC +AGFV+EA +IF M+ RY +KPSEEH++
Sbjct: 604 QEAIDLFDRMRSRGISPNHFTFKVVLSICKEAGFVDEALRIFKLMSVRYKIKPSEEHYSL 663
Query: 543 IIELLTRLQFADEVLR 590
+I +LTR +E R
Sbjct: 664 VIAILTRFGRLEEARR 679
Score = 89.0 bits (219), Expect = 1e-15
Identities = 47/168 (27%), Positives = 87/168 (51%)
Frame = +3
Query: 3 RNVISWTAMIESFLKNQCLDEALVVFRSMQLSKHRPDPVTMSRILRVCGDMGELKFGKEV 182
RN I WTA++ + N L++A+ MQ RPD VT++ IL VC + L+ GKE+
Sbjct: 383 RNAICWTALMSGYALNGRLEQAVRSVIWMQQEGFRPDIVTVATILPVCAQLRALRPGKEI 442
Query: 183 HGHVLRRDFVSVPFVSAEIVKMYGNSGEIEKAKLVFDTNPSKGSMTWTALIEAYGHNNRH 362
H + ++ F+ + + ++ MY G ++ +F+ + + WTA+I++Y N
Sbjct: 443 HAYAMKNCFLPNVSIVSSLMVMYSKCGVMDYTLKLFNGMEQRNVILWTAMIDSYIENQCP 502
Query: 363 QDALDLYDLMITNGFKPNHFTFQVVLSICDKAGFVNEACQIFDSMAKR 506
+A+D++ M + +P+ T +L IC + + +I + KR
Sbjct: 503 HEAIDIFRAMQLSKHRPDTVTMSRILYICSEQKMLKMGKEIHGQVLKR 550
Score = 82.8 bits (203), Expect = 7e-14
Identities = 45/150 (30%), Positives = 79/150 (52%), Gaps = 1/150 (0%)
Frame = +3
Query: 3 RNVISWTAMIESFLKNQCLDEALVVFRSMQLSKHRPDPVTMSRILRVCGDMGELKFGKEV 182
R+V+ W ++I F N+ EAL R M RP+ V ++ IL V G++ + G+EV
Sbjct: 281 RDVVVWGSIIAGFAHNRLQREALEYTRRMIDDGIRPNSVILTTILPVIGEIWARRLGQEV 340
Query: 183 HGHVLR-RDFVSVPFVSAEIVKMYGNSGEIEKAKLVFDTNPSKGSMTWTALIEAYGHNNR 359
H +V++ + + F+ + ++ MY G+I + VF + + ++ WTAL+ Y N R
Sbjct: 341 HAYVIKTKSYSKQIFIQSALIDMYCKCGDIGSGRAVFYASMERNAICWTALMSGYALNGR 400
Query: 360 HQDALDLYDLMITNGFKPNHFTFQVVLSIC 449
+ A+ M GF+P+ T +L +C
Sbjct: 401 LEQAVRSVIWMQQEGFRPDIVTVATILPVC 430
>ref|XP_002528029.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223532559|gb|EEF34347.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 208
Score = 241 bits (614), Expect = 2e-61
Identities = 117/203 (57%), Positives = 150/203 (73%)
Frame = +3
Query: 3 RNVISWTAMIESFLKNQCLDEALVVFRSMQLSKHRPDPVTMSRILRVCGDMGELKFGKEV 182
RNVISWTAMI+S +N +EAL VFRSMQLSKHRPD V M+R+L VCG M LK GKE+
Sbjct: 4 RNVISWTAMIDSHAENGYTNEALCVFRSMQLSKHRPDSVVMARMLSVCGKMKALKLGKEI 63
Query: 183 HGHVLRRDFVSVPFVSAEIVKMYGNSGEIEKAKLVFDTNPSKGSMTWTALIEAYGHNNRH 362
HGH L++ S+PFVSAEIV+MYG+ G AK F P KGSM WTA+IEA+GHNN
Sbjct: 64 HGHALKKHCESIPFVSAEIVRMYGSCGLNHIAKSFFHAIPVKGSMAWTAIIEAHGHNNLQ 123
Query: 363 QDALDLYDLMITNGFKPNHFTFQVVLSICDKAGFVNEACQIFDSMAKRYNVKPSEEHFNS 542
+DA+ L+ MI+ GF P HFTF VVL+ICD+AGF ++AC+IF+ M++RY +K SEEH++
Sbjct: 124 RDAIHLFHEMISGGFTPTHFTFTVVLNICDQAGFADDACRIFELMSRRYKIKASEEHYSV 183
Query: 543 IIELLTRLQFADEVLRYVRLKSS 611
+I LLTR E ++ ++ SS
Sbjct: 184 LIGLLTRAGRIQEAKKFTQMSSS 206