BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00016839
         (543 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282301.1| PREDICTED: pentatricopeptide repeat-containi...   270   1e-70
ref|XP_002530052.1| pentatricopeptide repeat-containing protein,...   236   2e-60
ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containi...   225   3e-57
ref|XP_004135492.1| PREDICTED: pentatricopeptide repeat-containi...   222   3e-56
ref|XP_002312667.1| predicted protein [Populus trichocarpa] gi|2...   217   8e-55

>ref|XP_002282301.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial [Vitis vinifera]
           gi|296081374|emb|CBI16807.3| unnamed protein product
           [Vitis vinifera]
          Length = 519

 Score =  270 bits (689), Expect = 1e-70
 Identities = 125/179 (69%), Positives = 150/179 (83%)
 Frame = -3

Query: 541 LHDMDRLGLVPDIWAYNIYLNVLCKEERLDTAIEVLKTMYRKGSEPDVVTYTTIIDGFCK 362
           L DMDRLG VPDIWAYNIYLN+LC E +LD A+ V++TM  KG EPD+VTYT +I+G C+
Sbjct: 102 LEDMDRLGYVPDIWAYNIYLNLLCCENQLDVALGVVQTMVEKGREPDIVTYTIVINGLCR 161

Query: 361 FGRYESAVEIWHEMVGRGFSPDVVACGALVFGLCERGKVDLAYELTLGMMKHQVEFSISV 182
            GR++SAVEIW  MV +GFSPD  AC ALV GLC  GKVDLAYELT+G M+ +++FS S+
Sbjct: 162 AGRFDSAVEIWRNMVRKGFSPDEKACRALVLGLCHDGKVDLAYELTVGAMRGRIKFSKSI 221

Query: 181 YNALISGFCQAGRVDKAQVIKAFMRRNGCEPDLVTYNILLNYCCDELMLEDAEKLMDKM 5
           YN+LI+GFCQAG +DKAQ I +FMRRNGCEPDLVTYN+LLNYCCDEL+LE+AE LM KM
Sbjct: 222 YNSLINGFCQAGWIDKAQSIISFMRRNGCEPDLVTYNVLLNYCCDELLLEEAENLMKKM 280



 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 5/181 (2%)
 Frame = -3

Query: 532 MDRLGLVPDIWAYNIYLNVLCKEERLDTAIEVLKTMYRKGSEPDVVTYTTIIDGFCKFGR 353
           M+R G+ PD+++YN  L  LCK  RLD A  ++          DVV+Y TII   C    
Sbjct: 280 MERSGVEPDVYSYNELLKGLCKANRLDKAYMMMVNKMEAKGLCDVVSYNTIIKALCTASH 339

Query: 352 YESAVEIWHEMVGRGFSPDVVACGALVFGLCERGKVDLAYELT-----LGMMKHQVEFSI 188
            + A +++ EM G+G +PDVV    L+      G  ++A +L      LG++  +V    
Sbjct: 340 TKRAYKLFEEMGGKGITPDVVTFTILIKAFLREGSSNIAKKLLDQMTGLGLLPDRV---- 395

Query: 187 SVYNALISGFCQAGRVDKAQVIKAFMRRNGCEPDLVTYNILLNYCCDELMLEDAEKLMDK 8
            +Y  ++   C+ G++  A  +   M  +G  PD+V+YN L+N  C    + +A  L + 
Sbjct: 396 -LYTTIVDHLCKTGKMGMAHSVFCDMVESGITPDVVSYNALINGLCRASRVSEAMHLYED 454

Query: 7   M 5
           M
Sbjct: 455 M 455



 Score = 95.1 bits (235), Expect = 6e-18
 Identities = 57/179 (31%), Positives = 93/179 (51%)
 Frame = -3

Query: 541 LHDMDRLGLVPDIWAYNIYLNVLCKEERLDTAIEVLKTMYRKGSEPDVVTYTTIIDGFCK 362
           ++ M+  GL  D+ +YN  +  LC       A ++ + M  KG  PDVVT+T +I  F +
Sbjct: 313 VNKMEAKGLC-DVVSYNTIIKALCTASHTKRAYKLFEEMGGKGITPDVVTFTILIKAFLR 371

Query: 361 FGRYESAVEIWHEMVGRGFSPDVVACGALVFGLCERGKVDLAYELTLGMMKHQVEFSISV 182
            G    A ++  +M G G  PD V    +V  LC+ GK+ +A+ +   M++  +   +  
Sbjct: 372 EGSSNIAKKLLDQMTGLGLLPDRVLYTTIVDHLCKTGKMGMAHSVFCDMVESGITPDVVS 431

Query: 181 YNALISGFCQAGRVDKAQVIKAFMRRNGCEPDLVTYNILLNYCCDELMLEDAEKLMDKM 5
           YNALI+G C+A RV +A  +   M   G  PD VT+ +++     E  L  A ++ D+M
Sbjct: 432 YNALINGLCRASRVSEAMHLYEDMHTGGPCPDEVTFKLIIGGLIWEKKLSVACRVWDQM 490



 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 51/164 (31%), Positives = 81/164 (49%)
 Frame = -3

Query: 496 YNIYLNVLCKEERLDTAIEVLKTMYRKGSEPDVVTYTTIIDGFCKFGRYESAVEIWHEMV 317
           YN  +N  C+   +D A  ++  M R G EPD+VTY  +++  C     E A  +  +M 
Sbjct: 222 YNSLINGFCQAGWIDKAQSIISFMRRNGCEPDLVTYNVLLNYCCDELLLEEAENLMKKME 281

Query: 316 GRGFSPDVVACGALVFGLCERGKVDLAYELTLGMMKHQVEFSISVYNALISGFCQAGRVD 137
             G  PDV +   L+ GLC+  ++D AY + +  M+ +    +  YN +I   C A    
Sbjct: 282 RSGVEPDVYSYNELLKGLCKANRLDKAYMMMVNKMEAKGLCDVVSYNTIIKALCTASHTK 341

Query: 136 KAQVIKAFMRRNGCEPDLVTYNILLNYCCDELMLEDAEKLMDKM 5
           +A  +   M   G  PD+VT+ IL+     E     A+KL+D+M
Sbjct: 342 RAYKLFEEMGGKGITPDVVTFTILIKAFLREGSSNIAKKLLDQM 385



 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 46/160 (28%), Positives = 75/160 (46%)
 Frame = -3

Query: 496 YNIYLNVLCKEERLDTAIEVLKTMYRKGSEPDVVTYTTIIDGFCKFGRYESAVEIWHEMV 317
           YN ++ VL ++ R D A +    M  +G   +  TY+  I G CK   +    ++  +M 
Sbjct: 47  YNRFIGVLVRQSRFDLAEQYYDRMIPQGFSLNSFTYSRFISGLCKVKNFVLIEKLLEDMD 106

Query: 316 GRGFSPDVVACGALVFGLCERGKVDLAYELTLGMMKHQVEFSISVYNALISGFCQAGRVD 137
             G+ PD+ A    +  LC   ++D+A  +   M++   E  I  Y  +I+G C+AGR D
Sbjct: 107 RLGYVPDIWAYNIYLNLLCCENQLDVALGVVQTMVEKGREPDIVTYTIVINGLCRAGRFD 166

Query: 136 KAQVIKAFMRRNGCEPDLVTYNILLNYCCDELMLEDAEKL 17
            A  I   M R G  PD      L+   C +  ++ A +L
Sbjct: 167 SAVEIWRNMVRKGFSPDEKACRALVLGLCHDGKVDLAYEL 206



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 38/126 (30%), Positives = 60/126 (47%)
 Frame = -3

Query: 541 LHDMDRLGLVPDIWAYNIYLNVLCKEERLDTAIEVLKTMYRKGSEPDVVTYTTIIDGFCK 362
           L  M  LGL+PD   Y   ++ LCK  ++  A  V   M   G  PDVV+Y  +I+G C+
Sbjct: 382 LDQMTGLGLLPDRVLYTTIVDHLCKTGKMGMAHSVFCDMVESGITPDVVSYNALINGLCR 441

Query: 361 FGRYESAVEIWHEMVGRGFSPDVVACGALVFGLCERGKVDLAYELTLGMMKHQVEFSISV 182
             R   A+ ++ +M   G  PD V    ++ GL    K+ +A  +   MM+       +V
Sbjct: 442 ASRVSEAMHLYEDMHTGGPCPDEVTFKLIIGGLIWEKKLSVACRVWDQMMEKGFTLDGAV 501

Query: 181 YNALIS 164
              L++
Sbjct: 502 SETLVN 507



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 39/165 (23%), Positives = 69/165 (41%)
 Frame = -3

Query: 499 AYNIYLNVLCKEERLDTAIEVLKTMYRKGSEPDVVTYTTIIDGFCKFGRYESAVEIWHEM 320
           AY   ++   K   +D A++    M +       + Y   I    +  R++ A + +  M
Sbjct: 11  AYRAQISSYVKAGLIDQALKTFDEMTKSNCRVFSIDYNRFIGVLVRQSRFDLAEQYYDRM 70

Query: 319 VGRGFSPDVVACGALVFGLCERGKVDLAYELTLGMMKHQVEFSISVYNALISGFCQAGRV 140
           + +GFS +       + GLC+     L  +L   M +      I  YN  ++  C   ++
Sbjct: 71  IPQGFSLNSFTYSRFISGLCKVKNFVLIEKLLEDMDRLGYVPDIWAYNIYLNLLCCENQL 130

Query: 139 DKAQVIKAFMRRNGCEPDLVTYNILLNYCCDELMLEDAEKLMDKM 5
           D A  +   M   G EPD+VTY I++N  C     + A ++   M
Sbjct: 131 DVALGVVQTMVEKGREPDIVTYTIVINGLCRAGRFDSAVEIWRNM 175


>ref|XP_002530052.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223530468|gb|EEF32352.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 554

 Score =  236 bits (602), Expect = 2e-60
 Identities = 110/180 (61%), Positives = 143/180 (79%), Gaps = 1/180 (0%)
 Frame = -3

Query: 541 LHDMDRLGLVPDIWAYNIYLNVLCKEERLDTAIEVLKTMYRKGSEPDVVTYTTIIDGFCK 362
           LHDM+ L  +PDIWA+NIYL++L  E R+D A+EV + + + G +PDVVTYT II G CK
Sbjct: 102 LHDMETLNCLPDIWAFNIYLHLLFVEGRIDLALEVFEKIVKNGRKPDVVTYTIIIHGVCK 161

Query: 361 FGRYESAVEIWHEMVGRGFSPDVVACGALVFGLCERGKVDLAYELTLGMMKH-QVEFSIS 185
             ++++A++ W +M+ +GFSPD  ACGA+V GLC+  KVDLAYEL + +MK  +V+ S  
Sbjct: 162 IKKFDTAIQFWRDMIHKGFSPDNKACGAIVVGLCDGRKVDLAYELIIDVMKSGRVKLSTL 221

Query: 184 VYNALISGFCQAGRVDKAQVIKAFMRRNGCEPDLVTYNILLNYCCDELMLEDAEKLMDKM 5
           VYNALISGFC+AGR+DKAQ IK+FMRRNGCEPDLVTYN+ LNY CDELML+DA+KL+  M
Sbjct: 222 VYNALISGFCRAGRIDKAQAIKSFMRRNGCEPDLVTYNVFLNYFCDELMLDDAKKLLKLM 281



 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 53/171 (30%), Positives = 91/171 (53%), Gaps = 4/171 (2%)
 Frame = -3

Query: 508 DIWAYNIYLNVLCKEERLDTAIEVLKTMYRKGSEPDVVTYTTIIDGFCKFGRYESAVEIW 329
           D+ +YN  +   CK     +A ++ + M +KG  PDVVT+T  I  F   G +  A ++ 
Sbjct: 324 DVVSYNTIIKAFCKIGDTTSAYKLFEEMGQKGIPPDVVTFTIFIKAFLGKGSFNIAKKLL 383

Query: 328 HEMVGRGFSPDVVACGALVFGLCERGKVDLAYELTLGMMKHQVEFSISVYNALISGFCQA 149
            +M   G SPD +    ++  LC+ GKV++A+ +   M++  +   +  +NALI+GFC+ 
Sbjct: 384 DQMTEMGLSPDCIFYTTIIDHLCKSGKVEMAHSIFCDMVEQGISPDVISFNALINGFCKC 443

Query: 148 GRVDKAQVIKAFMRRNGCEPDLVTYNILLNYCCDELMLEDA----EKLMDK 8
            RV +A  +   M+  G  PD VTY +++    +E  +  A     ++MDK
Sbjct: 444 SRVSEAMHLYEEMQNRGSYPDEVTYKLIIGGLIEEKKISIACMVWGQMMDK 494



 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 63/211 (29%), Positives = 94/211 (44%), Gaps = 35/211 (16%)
 Frame = -3

Query: 532 MDRLGLVPDIWAYNIYLNVLCKEERLDTAIEVLKTMYRKGSEPDV--------------- 398
           M R G  PD+  YN++LN  C E  LD A ++LK M R G EPDV               
Sbjct: 246 MRRNGCEPDLVTYNVFLNYFCDELMLDDAKKLLKLMERSGIEPDVYSYNQLLKGICKGNC 305

Query: 397 --------------------VTYTTIIDGFCKFGRYESAVEIWHEMVGRGFSPDVVACGA 278
                               V+Y TII  FCK G   SA +++ EM  +G  PDVV    
Sbjct: 306 PDKAYLLMTNKMWPKGLCDVVSYNTIIKAFCKIGDTTSAYKLFEEMGQKGIPPDVVTFTI 365

Query: 277 LVFGLCERGKVDLAYELTLGMMKHQVEFSISVYNALISGFCQAGRVDKAQVIKAFMRRNG 98
            +     +G  ++A +L   M +  +      Y  +I   C++G+V+ A  I   M   G
Sbjct: 366 FIKAFLGKGSFNIAKKLLDQMTEMGLSPDCIFYTTIIDHLCKSGKVEMAHSIFCDMVEQG 425

Query: 97  CEPDLVTYNILLNYCCDELMLEDAEKLMDKM 5
             PD++++N L+N  C    + +A  L ++M
Sbjct: 426 ISPDVISFNALINGFCKCSRVSEAMHLYEEM 456



 Score = 85.5 bits (210), Expect = 5e-15
 Identities = 50/164 (30%), Positives = 78/164 (47%)
 Frame = -3

Query: 496 YNIYLNVLCKEERLDTAIEVLKTMYRKGSEPDVVTYTTIIDGFCKFGRYESAVEIWHEMV 317
           YN  ++  C+  R+D A  +   M R G EPD+VTY   ++ FC     + A ++   M 
Sbjct: 223 YNALISGFCRAGRIDKAQAIKSFMRRNGCEPDLVTYNVFLNYFCDELMLDDAKKLLKLME 282

Query: 316 GRGFSPDVVACGALVFGLCERGKVDLAYELTLGMMKHQVEFSISVYNALISGFCQAGRVD 137
             G  PDV +   L+ G+C+    D AY L    M  +    +  YN +I  FC+ G   
Sbjct: 283 RSGIEPDVYSYNQLLKGICKGNCPDKAYLLMTNKMWPKGLCDVVSYNTIIKAFCKIGDTT 342

Query: 136 KAQVIKAFMRRNGCEPDLVTYNILLNYCCDELMLEDAEKLMDKM 5
            A  +   M + G  PD+VT+ I +     +     A+KL+D+M
Sbjct: 343 SAYKLFEEMGQKGIPPDVVTFTIFIKAFLGKGSFNIAKKLLDQM 386



 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 44/146 (30%), Positives = 71/146 (48%)
 Frame = -3

Query: 535 DMDRLGLVPDIWAYNIYLNVLCKEERLDTAIEVLKTMYRKGSEPDVVTYTTIIDGFCKFG 356
           +M + G+ PD+  + I++     +   + A ++L  M   G  PD + YTTIID  CK G
Sbjct: 350 EMGQKGIPPDVVTFTIFIKAFLGKGSFNIAKKLLDQMTEMGLSPDCIFYTTIIDHLCKSG 409

Query: 355 RYESAVEIWHEMVGRGFSPDVVACGALVFGLCERGKVDLAYELTLGMMKHQVEFSISVYN 176
           + E A  I+ +MV +G SPDV++  AL+ G C+  +V  A  L   M           Y 
Sbjct: 410 KVEMAHSIFCDMVEQGISPDVISFNALINGFCKCSRVSEAMHLYEEMQNRGSYPDEVTYK 469

Query: 175 ALISGFCQAGRVDKAQVIKAFMRRNG 98
            +I G  +  ++  A ++   M   G
Sbjct: 470 LIIGGLIEEKKISIACMVWGQMMDKG 495



 Score = 75.5 bits (184), Expect = 5e-12
 Identities = 40/127 (31%), Positives = 63/127 (49%)
 Frame = -3

Query: 541 LHDMDRLGLVPDIWAYNIYLNVLCKEERLDTAIEVLKTMYRKGSEPDVVTYTTIIDGFCK 362
           L  M  +GL PD   Y   ++ LCK  +++ A  +   M  +G  PDV+++  +I+GFCK
Sbjct: 383 LDQMTEMGLSPDCIFYTTIIDHLCKSGKVEMAHSIFCDMVEQGISPDVISFNALINGFCK 442

Query: 361 FGRYESAVEIWHEMVGRGFSPDVVACGALVFGLCERGKVDLAYELTLGMMKHQVEFSISV 182
             R   A+ ++ EM  RG  PD V    ++ GL E  K+ +A  +   MM        ++
Sbjct: 443 CSRVSEAMHLYEEMQNRGSYPDEVTYKLIIGGLIEEKKISIACMVWGQMMDKGFTLDRAI 502

Query: 181 YNALISG 161
              LI G
Sbjct: 503 AQTLIRG 509


>ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Glycine max]
          Length = 521

 Score =  225 bits (574), Expect = 3e-57
 Identities = 104/179 (58%), Positives = 135/179 (75%)
 Frame = -3

Query: 541 LHDMDRLGLVPDIWAYNIYLNVLCKEERLDTAIEVLKTMYRKGSEPDVVTYTTIIDGFCK 362
           L DMD LG VPDIWA+N YLN+LC++ RL+TA+E+  +M  KG +PDVV+YT IID  C 
Sbjct: 107 LLDMDSLGFVPDIWAFNTYLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCN 166

Query: 361 FGRYESAVEIWHEMVGRGFSPDVVACGALVFGLCERGKVDLAYELTLGMMKHQVEFSISV 182
             R++ A ++W  ++ +G SPD  AC ALV GLC  G+VDLAYEL +G++K  V+ +  V
Sbjct: 167 AKRFDEAAKVWRRLIDKGLSPDYKACVALVVGLCSGGRVDLAYELVVGVIKGGVKVNSLV 226

Query: 181 YNALISGFCQAGRVDKAQVIKAFMRRNGCEPDLVTYNILLNYCCDELMLEDAEKLMDKM 5
           YNALI GFC+ GRVDKA  IKAFM R GC PDLVTYNILLNYCC+E M+++A +L++ M
Sbjct: 227 YNALIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETM 285



 Score =  112 bits (280), Expect = 4e-23
 Identities = 68/211 (32%), Positives = 95/211 (45%), Gaps = 35/211 (16%)
 Frame = -3

Query: 532 MDRLGLVPDIWAYNIYLNVLCKEERLDTAIEVLKTMYRKGSEPD---------------- 401
           M R G VPD+  YNI LN  C+E  +D A+ +++TM R G EPD                
Sbjct: 250 MSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSYNELLKGFCKANM 309

Query: 400 -------------------VVTYTTIIDGFCKFGRYESAVEIWHEMVGRGFSPDVVACGA 278
                              VV+Y T+I  FCK  R     E++ EM G+G  PD+V    
Sbjct: 310 VDRAHLMMVERMQTKGMCDVVSYNTVITAFCKARRTRKGYELFEEMCGKGIRPDMVTFNI 369

Query: 277 LVFGLCERGKVDLAYELTLGMMKHQVEFSISVYNALISGFCQAGRVDKAQVIKAFMRRNG 98
           L+      G   +  +L   M K +V      Y A++   C+ G+VD A  +   M  NG
Sbjct: 370 LIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLCKNGKVDVAHSVFRDMVENG 429

Query: 97  CEPDLVTYNILLNYCCDELMLEDAEKLMDKM 5
             PD+++YN LLN  C    + DA  L D+M
Sbjct: 430 VNPDVISYNALLNGFCKTSRVMDAMHLFDEM 460



 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 51/164 (31%), Positives = 86/164 (52%)
 Frame = -3

Query: 496 YNIYLNVLCKEERLDTAIEVLKTMYRKGSEPDVVTYTTIIDGFCKFGRYESAVEIWHEMV 317
           YN  ++  C+  R+D A+++   M R G  PD+VTY  +++  C+ G  + AV +   M 
Sbjct: 227 YNALIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETME 286

Query: 316 GRGFSPDVVACGALVFGLCERGKVDLAYELTLGMMKHQVEFSISVYNALISGFCQAGRVD 137
             G  PD+ +   L+ G C+   VD A+ + +  M+ +    +  YN +I+ FC+A R  
Sbjct: 287 RSGVEPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMCDVVSYNTVITAFCKARRTR 346

Query: 136 KAQVIKAFMRRNGCEPDLVTYNILLNYCCDELMLEDAEKLMDKM 5
           K   +   M   G  PD+VT+NIL++    E      +KL+D+M
Sbjct: 347 KGYELFEEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEM 390



 Score = 92.4 bits (228), Expect = 4e-17
 Identities = 60/213 (28%), Positives = 91/213 (42%), Gaps = 35/213 (16%)
 Frame = -3

Query: 538 HDMDRLGLVPDIWAYNIYLNVLCKEERLDTAIEVLKTMYRKGSEPDV------------- 398
           H M   G  PD+ +Y I ++ LC  +R D A +V + +  KG  PD              
Sbjct: 143 HSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKVWRRLIDKGLSPDYKACVALVVGLCSG 202

Query: 397 ----------------------VTYTTIIDGFCKFGRYESAVEIWHEMVGRGFSPDVVAC 284
                                 + Y  +IDGFC+ GR + A++I   M   G  PD+V  
Sbjct: 203 GRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTY 262

Query: 283 GALVFGLCERGKVDLAYELTLGMMKHQVEFSISVYNALISGFCQAGRVDKAQVIKAFMRR 104
             L+   CE G VD A  L   M +  VE  +  YN L+ GFC+A  VD+A ++     +
Sbjct: 263 NILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSYNELLKGFCKANMVDRAHLMMVERMQ 322

Query: 103 NGCEPDLVTYNILLNYCCDELMLEDAEKLMDKM 5
                D+V+YN ++   C         +L ++M
Sbjct: 323 TKGMCDVVSYNTVITAFCKARRTRKGYELFEEM 355



 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 37/111 (33%), Positives = 60/111 (54%)
 Frame = -3

Query: 541 LHDMDRLGLVPDIWAYNIYLNVLCKEERLDTAIEVLKTMYRKGSEPDVVTYTTIIDGFCK 362
           L +M ++ ++PD   Y   ++ LCK  ++D A  V + M   G  PDV++Y  +++GFCK
Sbjct: 387 LDEMTKMRVLPDCIFYTAVVDHLCKNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFCK 446

Query: 361 FGRYESAVEIWHEMVGRGFSPDVVACGALVFGLCERGKVDLAYELTLGMMK 209
             R   A+ ++ EM  +G  PD V    +V GL    K+ LA  +   MM+
Sbjct: 447 TSRVMDAMHLFDEMQSKGLYPDEVTYKLIVGGLIRGKKISLACRVWDQMME 497



 Score = 59.3 bits (142), Expect = 4e-07
 Identities = 29/78 (37%), Positives = 42/78 (53%)
 Frame = -3

Query: 535 DMDRLGLVPDIWAYNIYLNVLCKEERLDTAIEVLKTMYRKGSEPDVVTYTTIIDGFCKFG 356
           DM   G+ PD+ +YN  LN  CK  R+  A+ +   M  KG  PD VTY  I+ G  +  
Sbjct: 424 DMVENGVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYPDEVTYKLIVGGLIRGK 483

Query: 355 RYESAVEIWHEMVGRGFS 302
           +   A  +W +M+ RGF+
Sbjct: 484 KISLACRVWDQMMERGFT 501


>ref|XP_004135492.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Cucumis sativus]
           gi|449494962|ref|XP_004159696.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Cucumis sativus]
          Length = 514

 Score =  222 bits (565), Expect = 3e-56
 Identities = 105/179 (58%), Positives = 136/179 (75%)
 Frame = -3

Query: 541 LHDMDRLGLVPDIWAYNIYLNVLCKEERLDTAIEVLKTMYRKGSEPDVVTYTTIIDGFCK 362
           L DM +LG +PDIWA+NIYLN+L +E  L+ A++    M  KG EPDVVTYT I+D  CK
Sbjct: 102 LEDMKQLGYLPDIWAFNIYLNLLFRENLLELALKFFDEMVAKGREPDVVTYTIIVDRLCK 161

Query: 361 FGRYESAVEIWHEMVGRGFSPDVVACGALVFGLCERGKVDLAYELTLGMMKHQVEFSISV 182
             +Y+ AVE W  MV +G SPD+ AC ALV GLC+ GKVDLAYELT+G MK +++F+  +
Sbjct: 162 AKQYDKAVEFWRCMVNKGLSPDMKACTALVVGLCDGGKVDLAYELTVGEMKGEMKFNNLI 221

Query: 181 YNALISGFCQAGRVDKAQVIKAFMRRNGCEPDLVTYNILLNYCCDELMLEDAEKLMDKM 5
           +N+L+SGFC++GR+ KA  IK+FM ++GCEPDL+TYNILLN+ CD LMLE A K M KM
Sbjct: 222 FNSLMSGFCKSGRISKALAIKSFMSKHGCEPDLITYNILLNFFCDGLMLELAGKSMKKM 280



 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 35/211 (16%)
 Frame = -3

Query: 532 MDRLGLVPDIWAYNIYLNVLCKEERLDTAIEVLKTMYRKGSEPDVVTYTTIIDGFCKFGR 353
           M+R+G+ PD+++YN  L  LCK  RLD A +++ TM+ KG   D V+Y T+I   CK   
Sbjct: 280 MERIGMEPDVYSYNQLLKGLCKANRLDKAYKLMNTMWEKGL-CDTVSYNTVIGALCKSFA 338

Query: 352 YESAVEIWHEMVGRGFSPDVVACGALVFGLCERGKVDLA--------------------- 236
              A  ++ EM  +  +PDV     L+      G   +A                     
Sbjct: 339 TRKAYRLFEEMGQKDVAPDVGTFATLIKAFLIEGSPHIAKGLLQTMTQTVLIPDLIFYTT 398

Query: 235 ----------YELTLGMMKHQVEFSISV----YNALISGFCQAGRVDKAQVIKAFMRRNG 98
                      E+  G+ +  +E  IS     YNALI+G C+A +V +A ++   M+  G
Sbjct: 399 VVDYFCKTRKIEMAQGVFRDMIEIGISPDVVSYNALINGLCKASKVSEAMLLYEEMQIRG 458

Query: 97  CEPDLVTYNILLNYCCDELMLEDAEKLMDKM 5
           C PD VT+ +++     +  L  A ++ D+M
Sbjct: 459 CYPDEVTFKLIIGGLLRKKELSLACQVWDQM 489



 Score = 82.0 bits (201), Expect = 5e-14
 Identities = 52/176 (29%), Positives = 82/176 (46%)
 Frame = -3

Query: 532 MDRLGLVPDIWAYNIYLNVLCKEERLDTAIEVLKTMYRKGSEPDVVTYTTIIDGFCKFGR 353
           M + G  PD+  YNI LN  C    L+ A + +K M R G EPDV +Y  ++ G CK  R
Sbjct: 245 MSKHGCEPDLITYNILLNFFCDGLMLELAGKSMKKMERIGMEPDVYSYNQLLKGLCKANR 304

Query: 352 YESAVEIWHEMVGRGFSPDVVACGALVFGLCERGKVDLAYELTLGMMKHQVEFSISVYNA 173
            + A ++ + M  +G   D V+   ++  LC+      AY L   M +  V   +  +  
Sbjct: 305 LDKAYKLMNTMWEKGLC-DTVSYNTVIGALCKSFATRKAYRLFEEMGQKDVAPDVGTFAT 363

Query: 172 LISGFCQAGRVDKAQVIKAFMRRNGCEPDLVTYNILLNYCCDELMLEDAEKLMDKM 5
           LI  F   G    A+ +   M +    PDL+ Y  +++Y C    +E A+ +   M
Sbjct: 364 LIKAFLIEGSPHIAKGLLQTMTQTVLIPDLIFYTTVVDYFCKTRKIEMAQGVFRDM 419



 Score = 71.2 bits (173), Expect = 9e-11
 Identities = 42/145 (28%), Positives = 74/145 (51%)
 Frame = -3

Query: 496 YNIYLNVLCKEERLDTAIEVLKTMYRKGSEPDVVTYTTIIDGFCKFGRYESAVEIWHEMV 317
           +N  ++  CK  R+  A+ +   M + G EPD++TY  +++ FC     E A +   +M 
Sbjct: 222 FNSLMSGFCKSGRISKALAIKSFMSKHGCEPDLITYNILLNFFCDGLMLELAGKSMKKME 281

Query: 316 GRGFSPDVVACGALVFGLCERGKVDLAYELTLGMMKHQVEFSISVYNALISGFCQAGRVD 137
             G  PDV +   L+ GLC+  ++D AY+L   M +  +  ++S YN +I   C++    
Sbjct: 282 RIGMEPDVYSYNQLLKGLCKANRLDKAYKLMNTMWEKGLCDTVS-YNTVIGALCKSFATR 340

Query: 136 KAQVIKAFMRRNGCEPDLVTYNILL 62
           KA  +   M +    PD+ T+  L+
Sbjct: 341 KAYRLFEEMGQKDVAPDVGTFATLI 365



 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 35/111 (31%), Positives = 59/111 (53%)
 Frame = -3

Query: 541 LHDMDRLGLVPDIWAYNIYLNVLCKEERLDTAIEVLKTMYRKGSEPDVVTYTTIIDGFCK 362
           L  M +  L+PD+  Y   ++  CK  +++ A  V + M   G  PDVV+Y  +I+G CK
Sbjct: 381 LQTMTQTVLIPDLIFYTTVVDYFCKTRKIEMAQGVFRDMIEIGISPDVVSYNALINGLCK 440

Query: 361 FGRYESAVEIWHEMVGRGFSPDVVACGALVFGLCERGKVDLAYELTLGMMK 209
             +   A+ ++ EM  RG  PD V    ++ GL  + ++ LA ++   MM+
Sbjct: 441 ASKVSEAMLLYEEMQIRGCYPDEVTFKLIIGGLLRKKELSLACQVWDQMME 491



 Score = 58.5 bits (140), Expect = 6e-07
 Identities = 28/94 (29%), Positives = 50/94 (53%)
 Frame = -3

Query: 535 DMDRLGLVPDIWAYNIYLNVLCKEERLDTAIEVLKTMYRKGSEPDVVTYTTIIDGFCKFG 356
           DM  +G+ PD+ +YN  +N LCK  ++  A+ + + M  +G  PD VT+  II G  +  
Sbjct: 418 DMIEIGISPDVVSYNALINGLCKASKVSEAMLLYEEMQIRGCYPDEVTFKLIIGGLLRKK 477

Query: 355 RYESAVEIWHEMVGRGFSPDVVACGALVFGLCER 254
               A ++W +M+ +G++ D      L+  +  R
Sbjct: 478 ELSLACQVWDQMMEKGYTLDKFLSETLIKAIRSR 511


>ref|XP_002312667.1| predicted protein [Populus trichocarpa] gi|222852487|gb|EEE90034.1|
           predicted protein [Populus trichocarpa]
          Length = 512

 Score =  217 bits (553), Expect = 8e-55
 Identities = 103/180 (57%), Positives = 135/180 (75%), Gaps = 1/180 (0%)
 Frame = -3

Query: 541 LHDMDRLGLVPDIWAYNIYLNVLCKEERLDTAIEVLKTMYRKGSEPDVVTYTTIIDGFCK 362
           L DM++L  VPDIWA+NIYLN+L +E R ++A+EV   M  +G EPDVVT+T IIDG CK
Sbjct: 102 LKDMEKLHCVPDIWAFNIYLNLLFRENREESALEVFGRMVERGREPDVVTFTIIIDGLCK 161

Query: 361 FGRYESAVEIWHEMVGRGFSPDVVACGALVFGLCERGKVDLAYELTLGMMKHQV-EFSIS 185
             ++++AV+ W  M+ +G  PD  AC AL  GLC+ G+VDLAYEL +G++   + E S  
Sbjct: 162 MKKFDAAVQFWLNMLDKGIRPDNKACVALAVGLCDGGQVDLAYELIIGVISGGLSEVSTL 221

Query: 184 VYNALISGFCQAGRVDKAQVIKAFMRRNGCEPDLVTYNILLNYCCDELMLEDAEKLMDKM 5
           VYNALISGFC+AGR+DKA  + +FM R GC+PDLVTYN+LLNYCC+E M E+A KL+ KM
Sbjct: 222 VYNALISGFCRAGRIDKALAMVSFMSRTGCKPDLVTYNVLLNYCCNEFMFEEAVKLLKKM 281



 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 53/168 (31%), Positives = 89/168 (52%)
 Frame = -3

Query: 508 DIWAYNIYLNVLCKEERLDTAIEVLKTMYRKGSEPDVVTYTTIIDGFCKFGRYESAVEIW 329
           D+ +YN  +   C       A ++ + M RKG  PDVVT+T +I  F + G  + A ++ 
Sbjct: 324 DVVSYNTIIKAFCSISNNRRAYKLFEEMGRKGIAPDVVTFTILIKAFLREGNSDMAKKLL 383

Query: 328 HEMVGRGFSPDVVACGALVFGLCERGKVDLAYELTLGMMKHQVEFSISVYNALISGFCQA 149
             M G G  PD +    ++   C+ GKV++A+ +   M++  +   +  YNALI+GFC++
Sbjct: 384 DLMAGMGLLPDRIFYTTIIDHHCKSGKVEMAHSIFCDMVEKGITPDVVSYNALINGFCKS 443

Query: 148 GRVDKAQVIKAFMRRNGCEPDLVTYNILLNYCCDELMLEDAEKLMDKM 5
            RV +   +   M + G  PD VTY +++     E  L DA ++ D+M
Sbjct: 444 LRVGEVMHLYEQMLQRGSFPDEVTYKLIIGALVRENKLSDACRVWDQM 491



 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 60/216 (27%), Positives = 92/216 (42%), Gaps = 40/216 (18%)
 Frame = -3

Query: 532 MDRLGLVPDIWAYNIYLNVLCKEERLDTAIEVLKTMYRKGSEPDV--------------- 398
           M R G  PD+  YN+ LN  C E   + A+++LK M     EPDV               
Sbjct: 246 MSRTGCKPDLVTYNVLLNYCCNEFMFEEAVKLLKKMECSAIEPDVYSYNQLLKAHCKANH 305

Query: 397 --------------------VTYTTIIDGFCKFGRYESAVEIWHEMVGRGFSPDVVACGA 278
                               V+Y TII  FC       A +++ EM  +G +PDVV    
Sbjct: 306 PDKAYLFMVTKMVPKGFCDVVSYNTIIKAFCSISNNRRAYKLFEEMGRKGIAPDVVTFTI 365

Query: 277 LVFGLCERGKVDLAYELT-----LGMMKHQVEFSISVYNALISGFCQAGRVDKAQVIKAF 113
           L+      G  D+A +L      +G++  ++      Y  +I   C++G+V+ A  I   
Sbjct: 366 LIKAFLREGNSDMAKKLLDLMAGMGLLPDRI-----FYTTIIDHHCKSGKVEMAHSIFCD 420

Query: 112 MRRNGCEPDLVTYNILLNYCCDELMLEDAEKLMDKM 5
           M   G  PD+V+YN L+N  C  L + +   L ++M
Sbjct: 421 MVEKGITPDVVSYNALINGFCKSLRVGEVMHLYEQM 456



 Score = 85.5 bits (210), Expect = 5e-15
 Identities = 50/165 (30%), Positives = 81/165 (49%)
 Frame = -3

Query: 496 YNIYLNVLCKEERLDTAIEVLKTMYRKGSEPDVVTYTTIIDGFCKFGRYESAVEIWHEMV 317
           YN  ++  C+  R+D A+ ++  M R G +PD+VTY  +++  C    +E AV++  +M 
Sbjct: 223 YNALISGFCRAGRIDKALAMVSFMSRTGCKPDLVTYNVLLNYCCNEFMFEEAVKLLKKME 282

Query: 316 GRGFSPDVVACGALVFGLCERGKVDLAYELTLGMMKHQVEFSISVYNALISGFCQAGRVD 137
                PDV +   L+   C+    D AY   +  M  +    +  YN +I  FC      
Sbjct: 283 CSAIEPDVYSYNQLLKAHCKANHPDKAYLFMVTKMVPKGFCDVVSYNTIIKAFCSISNNR 342

Query: 136 KAQVIKAFMRRNGCEPDLVTYNILLNYCCDELMLEDAEKLMDKMA 2
           +A  +   M R G  PD+VT+ IL+     E   + A+KL+D MA
Sbjct: 343 RAYKLFEEMGRKGIAPDVVTFTILIKAFLREGNSDMAKKLLDLMA 387