BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00016837
         (656 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002524479.1| pentatricopeptide repeat-containing protein,...   205   5e-51
ref|XP_003627685.1| Pentatricopeptide repeat-containing protein ...   192   4e-47
emb|CBI28186.3| unnamed protein product [Vitis vinifera]              187   1e-45
ref|XP_002281953.1| PREDICTED: pentatricopeptide repeat-containi...   187   1e-45
ref|XP_004166729.1| PREDICTED: pentatricopeptide repeat-containi...   186   4e-45

>ref|XP_002524479.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223536267|gb|EEF37919.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 576

 Score =  205 bits (522), Expect = 5e-51
 Identities = 109/214 (50%), Positives = 144/214 (67%)
 Frame = +1

Query: 13  KPTKLHLSTLANFKHYDNTHQLFEKIPQPNHAAIHRSMLSSLHQNQAFEALQILKNQITL 192
           K +K    T  N   Y+N +QL +K  QPN  +IHRSML S+H+N  F+AL+I K  I  
Sbjct: 13  KFSKQRSFTSENLHTYNNAYQLLDKNSQPNSVSIHRSMLDSIHKNLPFQALKIFKKNIQF 72

Query: 193 GGGPHAVDEVSIAIGLKACRGDTKLGLQIHGCAIVSGLDLYLTVLNGLMSMYCKAGKNDE 372
               +++DEV+IA+ LK+C GD  LG QIHG AI SGL  ++TV N LM+MYCK+G+   
Sbjct: 73  DFF-NSIDEVTIALALKSCCGDKLLGSQIHGFAITSGLYSFITVPNSLMNMYCKSGQFTH 131

Query: 373 AIEIFGNIECPDNVSWNTVISGSRGCEDGVELAIRMHRMGFEFDDVTYTSVLKFCSDCEE 552
           A+ IF  +  PD VSWNTV+SG +  E+ +  A++M+  G  FD VTYT+VL FCS  EE
Sbjct: 132 ALCIFETLNDPDIVSWNTVLSGFQRSEEALNFALKMNSNGVVFDAVTYTTVLAFCSRIEE 191

Query: 553 LVLFGIQLHCRIIKFGFEFETYVGNALITLYSRW 654
             LFG+QLH  I+K G + E +VGNALIT+YSRW
Sbjct: 192 F-LFGLQLHSCILKVGLDCEVFVGNALITMYSRW 224



 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 48/132 (36%), Positives = 70/132 (53%), Gaps = 4/132 (3%)
 Frame = +1

Query: 268 GLQIHGCAIVSGLDLYLTVLNGLMSMYCKAGKNDEAIEIFGNIECPDNVSWNTVISGSRG 447
           GLQ+H C +  GLD  + V N L++MY + G   EA  +F  ++  D VSWN +ISG   
Sbjct: 195 GLQLHSCILKVGLDCEVFVGNALITMYSRWGCLLEAGRVFEEMQTTDLVSWNAIISGYTQ 254

Query: 448 CE----DGVELAIRMHRMGFEFDDVTYTSVLKFCSDCEELVLFGIQLHCRIIKFGFEFET 615
                 + + + I M R G + D V++TS +  C   E  +  G Q+H   IK G+    
Sbjct: 255 AGIYGLEAISIFIEMVRRGIKLDHVSFTSAISACGH-ERNLEVGRQVHGLSIKRGYGKHV 313

Query: 616 YVGNALITLYSR 651
            VGN LI+ YS+
Sbjct: 314 SVGNVLISTYSK 325



 Score = 62.0 bits (149), Expect = 1e-07
 Identities = 47/150 (31%), Positives = 76/150 (50%), Gaps = 2/150 (1%)
 Frame = +1

Query: 211 VDEVSIAIGLKACRGDTKL--GLQIHGCAIVSGLDLYLTVLNGLMSMYCKAGKNDEAIEI 384
           +D VS    + AC  +  L  G Q+HG +I  G   +++V N L+S Y K    ++A  +
Sbjct: 276 LDHVSFTSAISACGHERNLEVGRQVHGLSIKRGYGKHVSVGNVLISTYSKCEIIEDAKLV 335

Query: 385 FGNIECPDNVSWNTVISGSRGCEDGVELAIRMHRMGFEFDDVTYTSVLKFCSDCEELVLF 564
           F N+   + VSW T+IS     E+ V     M     + +DVT+  ++   +   +LV  
Sbjct: 336 FQNMLERNVVSWTTMISIDE--ENAVSFFNEMRYDEVDPNDVTFVGLIHAIT-IGDLVES 392

Query: 565 GIQLHCRIIKFGFEFETYVGNALITLYSRW 654
           G  +H   IK GF  E  V N+ IT+Y+++
Sbjct: 393 GKTVHGFCIKSGFSLEPSVQNSFITMYAKF 422



 Score = 61.2 bits (147), Expect = 2e-07
 Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 3/131 (2%)
 Frame = +1

Query: 268 GLQIHGCAIVSGLDLYLTVLNGLMSMYCKAGKNDEAIEIFGNIECPDNVSWNTVISG--S 441
           G  +HG  I SG  L  +V N  ++MY K G  ++++++F  +   + ++WN +ISG   
Sbjct: 393 GKTVHGFCIKSGFSLEPSVQNSFITMYAKFGSAEDSMKVFEELNYREIITWNALISGYAQ 452

Query: 442 RGCEDGVELAIRMHRMGFEFDDVTYTSVLKFCSDCEELVL-FGIQLHCRIIKFGFEFETY 618
            G      +         + +  T+ SVL      E++ L  G   H +I+K GF  +  
Sbjct: 453 NGLSQEAIITFFSALAESKPNQYTFGSVLSAIGAAEDISLKHGQMCHAQIMKLGFNSDPV 512

Query: 619 VGNALITLYSR 651
           V +AL+ +Y++
Sbjct: 513 VSSALLDMYAK 523


>ref|XP_003627685.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|358344437|ref|XP_003636296.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
           gi|358345563|ref|XP_003636846.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
           gi|355502231|gb|AES83434.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
           gi|355502781|gb|AES83984.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
           gi|355521707|gb|AET02161.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 791

 Score =  192 bits (489), Expect = 4e-47
 Identities = 98/199 (49%), Positives = 130/199 (65%), Gaps = 4/199 (2%)
 Frame = +1

Query: 70  HQLFEKIPQPNHAAIHRSMLSSLHQNQAFEALQILKNQITLGGGPHAVDEVSIAIGLKAC 249
           H LFEKIPQPN ++I+RSML+ LH+N  F+AL + KNQ T       +DEV++A+  KAC
Sbjct: 38  HNLFEKIPQPNASSINRSMLNFLHKNLPFQALSVFKNQ-TQFPFLQNIDEVTLALSFKAC 96

Query: 250 RGDTKLGLQIHGCAIVSGLDLYLTVLNGLMSMYCKAGKNDEAIEIFGNIECPDNVSWNTV 429
           RG+  LG QIHG  + +G    +TV N LM MYCKAG+ + A+ +F  + CPD VSWNT+
Sbjct: 97  RGEFILGAQIHGFVVATGFVSRVTVSNSLMKMYCKAGRFELALCVFEGLSCPDIVSWNTI 156

Query: 430 ISGSRGCEDGVELAIRMHRMGFEFDDVTYTSVLKFCSD----CEELVLFGIQLHCRIIKF 597
           +SG     D +  A  MH  G  FD VTYT+ L FC D     +   LFG+QLH  ++K 
Sbjct: 157 LSGFEKSVDALNFACFMHLNGVVFDPVTYTTALSFCWDRDYWDDHGFLFGLQLHSLVVKC 216

Query: 598 GFEFETYVGNALITLYSRW 654
           GF  E ++GNAL+T+YSRW
Sbjct: 217 GFGCEVFIGNALVTMYSRW 235



 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 44/133 (33%), Positives = 64/133 (48%), Gaps = 5/133 (3%)
 Frame = +1

Query: 268 GLQIHGCAIVSGLDLYLTVLNGLMSMYCKAGKNDEAIEIFGNIECPDNVSWNTVISG--S 441
           GLQ+H   +  G    + + N L++MY + G  DEA  +F  +   D VSWN ++SG   
Sbjct: 206 GLQLHSLVVKCGFGCEVFIGNALVTMYSRWGGLDEAGRVFNEMTIRDLVSWNAMLSGYAQ 265

Query: 442 RGCEDGVELAI---RMHRMGFEFDDVTYTSVLKFCSDCEELVLFGIQLHCRIIKFGFEFE 612
            G   G+E  +    M R G   D V+ T  +  C   + L  FG Q+H    K G+   
Sbjct: 266 EGECYGLEAVLLFGNMVREGMLLDHVSLTGAISACGYTKNLE-FGKQIHGLAQKLGYGTH 324

Query: 613 TYVGNALITLYSR 651
             V N LI+ YS+
Sbjct: 325 VAVCNVLISTYSK 337



 Score = 59.3 bits (142), Expect = 6e-07
 Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 3/164 (1%)
 Frame = +1

Query: 169 ILKNQITLGGGPHAVDEVSIAIGLKACRGDTKLGLQIHGCAIVSGLDLYLTVLNGLMSMY 348
           +  N +T  G  HA+            R   K GL +HG  + S L     V N L++MY
Sbjct: 382 VYPNDVTFIGLLHAI----------TIRNMVKEGLMVHGLCLKSCLSSEQNVSNSLITMY 431

Query: 349 CKAGKNDEAIEIFGNIECPDNVSWNTVISG--SRGCEDGVELAIRMHRMGFEFDDVTYTS 522
            K     E+ +IF  +     +SWN +ISG    G      L         + +  T+ S
Sbjct: 432 AKFESIQESKKIFEELNYQGTISWNALISGYAQNGLCKEAFLTFLSAIKEIKPNQYTFGS 491

Query: 523 VLKFCSDCEELVL-FGIQLHCRIIKFGFEFETYVGNALITLYSR 651
           VL   +  E++ L  G + H  +IK G   + +V  AL+ +Y +
Sbjct: 492 VLNAIAAAEDISLKHGQRCHSHLIKLGLNTDPFVAGALLDMYGK 535


>emb|CBI28186.3| unnamed protein product [Vitis vinifera]
          Length = 760

 Score =  187 bits (476), Expect = 1e-45
 Identities = 101/204 (49%), Positives = 140/204 (68%), Gaps = 3/204 (1%)
 Frame = +1

Query: 49  FKHYDNT---HQLFEKIPQPNHAAIHRSMLSSLHQNQAFEALQILKNQITLGGGPHAVDE 219
           FK++ ++   HQ  ++ PQ   A+++RSML++L +N + EAL + K Q+  G   + +D+
Sbjct: 22  FKYFHSSKHVHQPLDQSPQTTIASLNRSMLTALRRNLSLEALDLFKKQLQWGFVGN-IDQ 80

Query: 220 VSIAIGLKACRGDTKLGLQIHGCAIVSGLDLYLTVLNGLMSMYCKAGKNDEAIEIFGNIE 399
           V++AI LKAC GD+KLG QIH  AI SG   ++TV N LM+MYCKAG  D A+ +F N+ 
Sbjct: 81  VTVAIVLKACCGDSKLGCQIHAFAISSGFISHVTVPNSLMNMYCKAGLFDRALVVFENLN 140

Query: 400 CPDNVSWNTVISGSRGCEDGVELAIRMHRMGFEFDDVTYTSVLKFCSDCEELVLFGIQLH 579
            PD VSWNTV+SG +  +D +  A+RM+  G  FD VT T+VL FCSD E  + FG QLH
Sbjct: 141 NPDIVSWNTVLSGFQRSDDALNFALRMNFTGVAFDAVTCTTVLAFCSDHEGFI-FGFQLH 199

Query: 580 CRIIKFGFEFETYVGNALITLYSR 651
            RI+K G + E +VGNALIT+YSR
Sbjct: 200 SRILKCGLDCEVFVGNALITMYSR 223


>ref|XP_002281953.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial [Vitis vinifera]
          Length = 773

 Score =  187 bits (476), Expect = 1e-45
 Identities = 101/204 (49%), Positives = 140/204 (68%), Gaps = 3/204 (1%)
 Frame = +1

Query: 49  FKHYDNT---HQLFEKIPQPNHAAIHRSMLSSLHQNQAFEALQILKNQITLGGGPHAVDE 219
           FK++ ++   HQ  ++ PQ   A+++RSML++L +N + EAL + K Q+  G   + +D+
Sbjct: 22  FKYFHSSKHVHQPLDQSPQTTIASLNRSMLTALRRNLSLEALDLFKKQLQWGFVGN-IDQ 80

Query: 220 VSIAIGLKACRGDTKLGLQIHGCAIVSGLDLYLTVLNGLMSMYCKAGKNDEAIEIFGNIE 399
           V++AI LKAC GD+KLG QIH  AI SG   ++TV N LM+MYCKAG  D A+ +F N+ 
Sbjct: 81  VTVAIVLKACCGDSKLGCQIHAFAISSGFISHVTVPNSLMNMYCKAGLFDRALVVFENLN 140

Query: 400 CPDNVSWNTVISGSRGCEDGVELAIRMHRMGFEFDDVTYTSVLKFCSDCEELVLFGIQLH 579
            PD VSWNTV+SG +  +D +  A+RM+  G  FD VT T+VL FCSD E  + FG QLH
Sbjct: 141 NPDIVSWNTVLSGFQRSDDALNFALRMNFTGVAFDAVTCTTVLAFCSDHEGFI-FGFQLH 199

Query: 580 CRIIKFGFEFETYVGNALITLYSR 651
            RI+K G + E +VGNALIT+YSR
Sbjct: 200 SRILKCGLDCEVFVGNALITMYSR 223



 Score = 68.9 bits (167), Expect = 8e-10
 Identities = 42/132 (31%), Positives = 70/132 (53%), Gaps = 4/132 (3%)
 Frame = +1

Query: 268 GLQIHGCAIVSGLDLYLTVLNGLMSMYCKAGKNDEAIEIFGNIECPDNVSWNTVISG-SR 444
           G Q+H   +  GLD  + V N L++MY +  +  EA  +F  +   D VSWN ++SG ++
Sbjct: 195 GFQLHSRILKCGLDCEVFVGNALITMYSRCCRLVEARRVFDEMRNKDLVSWNAMLSGYAQ 254

Query: 445 GCEDGVE---LAIRMHRMGFEFDDVTYTSVLKFCSDCEELVLFGIQLHCRIIKFGFEFET 615
               G+E   + + M + G + D V++T  +  C   +E  L G Q+H   +K G++   
Sbjct: 255 EGNSGLEAILVFLEMLKEGMKLDHVSFTGAISACGHGKEFEL-GRQIHSLAVKIGYDTHV 313

Query: 616 YVGNALITLYSR 651
            V N LI+ YS+
Sbjct: 314 KVCNVLISTYSK 325


>ref|XP_004166729.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial-like [Cucumis sativus]
          Length = 781

 Score =  186 bits (471), Expect = 4e-45
 Identities = 95/212 (44%), Positives = 136/212 (64%)
 Frame = +1

Query: 19  TKLHLSTLANFKHYDNTHQLFEKIPQPNHAAIHRSMLSSLHQNQAFEALQILKNQITLGG 198
           +K    T   F+ + + H LF++ P PN A+ +R +L+ L ++ AF++L+  KN    G 
Sbjct: 10  SKQRFPTFNFFRSFQHDHNLFDQSPPPNAASFNRVLLNYLPRDGAFQSLRFFKNNFRWGL 69

Query: 199 GPHAVDEVSIAIGLKACRGDTKLGLQIHGCAIVSGLDLYLTVLNGLMSMYCKAGKNDEAI 378
             +A DE ++ + LKAC G  KLG QIHG  I SG   ++TV N LM+MYCK+G+ + A 
Sbjct: 70  DGNA-DEFTLVLALKACCGFPKLGRQIHGFVISSGFVSHITVSNSLMNMYCKSGQLERAF 128

Query: 379 EIFGNIECPDNVSWNTVISGSRGCEDGVELAIRMHRMGFEFDDVTYTSVLKFCSDCEELV 558
            +F N+  PD VSWNT++SG    E+ +  A+RM+  G +FD VTYT+ L FC D EE  
Sbjct: 129 SVFQNLHDPDIVSWNTILSGFEKSENALSFALRMNLNGVKFDSVTYTTALSFCLDGEEF- 187

Query: 559 LFGIQLHCRIIKFGFEFETYVGNALITLYSRW 654
           LFG QLH   +K GF+ + +VGNAL+T+YSRW
Sbjct: 188 LFGWQLHTLALKCGFKGDVFVGNALVTMYSRW 219



 Score = 72.0 bits (175), Expect = 9e-11
 Identities = 49/152 (32%), Positives = 79/152 (51%), Gaps = 6/152 (3%)
 Frame = +1

Query: 214 DEVSIAIGLKACRGDTKL--GLQIHGCAIVSGLDLYLTVLNGLMSMYCKAGKNDEAIEIF 387
           D V+    L  C    +   G Q+H  A+  G    + V N L++MY +     +A ++F
Sbjct: 170 DSVTYTTALSFCLDGEEFLFGWQLHTLALKCGFKGDVFVGNALVTMYSRWEHLVDARKVF 229

Query: 388 GNIECPDNVSWNTVISG-SRGCEDGVE---LAIRMHRMGFEFDDVTYTSVLKFCSDCEEL 555
             +   D VSW+ +I+G ++  ++G++   + ++M R G +FD+V  T  L  C     L
Sbjct: 230 DEMPSRDRVSWSAMITGYAQEGDNGLQAILVFVQMVREGVKFDNVPITGALSVCGHERNL 289

Query: 556 VLFGIQLHCRIIKFGFEFETYVGNALITLYSR 651
            L G Q+HC  +K G E  T VGN LI+ YS+
Sbjct: 290 EL-GKQIHCLAVKTGHETHTSVGNVLISTYSK 320



 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 56/208 (26%), Positives = 102/208 (49%), Gaps = 4/208 (1%)
 Frame = +1

Query: 43  ANFKHYDNTHQLFEKIPQPNHAAIHRSMLSSLHQ--NQAFEALQILKNQITLGGGPHAVD 216
           + ++H  +  ++F+++P  +  +   +M++   Q  +   +A+ +    +  G      D
Sbjct: 217 SRWEHLVDARKVFDEMPSRDRVS-WSAMITGYAQEGDNGLQAILVFVQMVREGV---KFD 272

Query: 217 EVSIAIGLKAC--RGDTKLGLQIHGCAIVSGLDLYLTVLNGLMSMYCKAGKNDEAIEIFG 390
            V I   L  C    + +LG QIH  A+ +G + + +V N L+S Y K    ++A  +F 
Sbjct: 273 NVPITGALSVCGHERNLELGKQIHCLAVKTGHETHTSVGNVLISTYSKCEIIEDAKAVFE 332

Query: 391 NIECPDNVSWNTVISGSRGCEDGVELAIRMHRMGFEFDDVTYTSVLKFCSDCEELVLFGI 570
            I   + +SW T+IS     E  V L  +M   G   +DVT+  +L   +    +V  G+
Sbjct: 333 LINDRNVISWTTMISLYE--EGAVSLFNKMRLDGVYPNDVTFIGLLHAIT-IRNMVEQGL 389

Query: 571 QLHCRIIKFGFEFETYVGNALITLYSRW 654
            +H   IK  F  E  VGN+LIT+Y+++
Sbjct: 390 MVHGLCIKADFVSELTVGNSLITMYAKF 417



 Score = 63.9 bits (154), Expect = 3e-08
 Identities = 56/217 (25%), Positives = 100/217 (46%), Gaps = 10/217 (4%)
 Frame = +1

Query: 31  LSTLANFKHYDNTHQLFEKIPQPNHAAIHRSMLSSLHQNQAFEALQILK------NQITL 192
           +ST +  +  ++   +FE I   N   I  + + SL++  A      ++      N +T 
Sbjct: 315 ISTYSKCEIIEDAKAVFELINDRN--VISWTTMISLYEEGAVSLFNKMRLDGVYPNDVTF 372

Query: 193 GGGPHAVDEVSIAIGLKACRGDTKLGLQIHGCAIVSGLDLYLTVLNGLMSMYCKAGKNDE 372
            G  HA+            R   + GL +HG  I +     LTV N L++MY K     +
Sbjct: 373 IGLLHAI----------TIRNMVEQGLMVHGLCIKADFVSELTVGNSLITMYAKFEFMQD 422

Query: 373 AIEIFGNIECPDNVSWNTVISG---SRGCEDGVELAIRMHRMGFEFDDVTYTSVLKFCSD 543
           A  +F  +   + +SWN +ISG   +  C++ +E A     M ++ ++ T+ SVL   S 
Sbjct: 423 ASRVFIELPYREIISWNALISGYAQNALCQEALE-AFLYAIMEYKPNEYTFGSVLNAISA 481

Query: 544 CEELVL-FGIQLHCRIIKFGFEFETYVGNALITLYSR 651
            E++ L  G + H  +IK G   +  +  AL+ +Y++
Sbjct: 482 GEDISLKHGQRCHSHLIKVGLNVDPIISGALLDMYAK 518