BLASTX nr result
ID: Coptis23_contig00016793
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00016793
(346 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat... 164 5e-39
ref|XP_004136721.1| PREDICTED: putative pentatricopeptide repeat... 164 9e-39
ref|XP_002524089.1| pentatricopeptide repeat-containing protein,... 163 2e-38
ref|XP_002871218.1| pentatricopeptide repeat-containing protein ... 156 2e-36
ref|NP_196258.1| pentatricopeptide repeat-containing protein [Ar... 156 2e-36
>ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g06400, mitochondrial-like [Vitis vinifera]
Length = 1048
Score = 164 bits (416), Expect = 5e-39
Identities = 75/115 (65%), Positives = 93/115 (80%)
Frame = +1
Query: 1 WSSMQEALERCTVPFSPDLVLEVLSRCQLYGHAALSFFTWMGKQARYNHNTETYNMAIKI 180
W ++EALE+CTV F+ LV+E+L C L+GHAAL FF+W+GK+ Y+H TETYNM IKI
Sbjct: 647 WCLIEEALEKCTVQFTSQLVVEILRSCSLHGHAALLFFSWVGKRDGYSHTTETYNMGIKI 706
Query: 181 SGCAKDFTHMRNLYLEMKRRGCLITSDTWTIMIMQYGRAGLTEIALRKFEEMKVD 345
SGC+K+F MRNL+ EM+R+G +T DTWTIMIMQYGRAGLTEIALR F EMK +
Sbjct: 707 SGCSKNFRSMRNLFFEMRRKGHPVTPDTWTIMIMQYGRAGLTEIALRNFAEMKAN 761
Score = 79.3 bits (194), Expect = 3e-13
Identities = 45/110 (40%), Positives = 61/110 (55%)
Frame = +1
Query: 7 SMQEALERCTVPFSPDLVLEVLSRCQLYGHAALSFFTWMGKQARYNHNTETYNMAIKISG 186
SM+E LE+ F ++V +VL RC H AL FF W+ + H T TYN + I+G
Sbjct: 157 SMEEKLEKSGFVFDSEVVEKVLKRCFKVPHLALRFFNWVKFRNGGCHTTRTYNTMLYIAG 216
Query: 187 CAKDFTHMRNLYLEMKRRGCLITSDTWTIMIMQYGRAGLTEIALRKFEEM 336
AK+F + L EM+ +GC TWTI+I YG+A L AL E+M
Sbjct: 217 EAKEFGLVEKLIGEMEEKGCKRDIKTWTILISHYGKAKLIGKALLILEKM 266
>ref|XP_004136721.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g06400, mitochondrial-like [Cucumis sativus]
gi|449501176|ref|XP_004161299.1| PREDICTED: putative
pentatricopeptide repeat-containing protein At5g06400,
mitochondrial-like [Cucumis sativus]
Length = 1037
Score = 164 bits (414), Expect = 9e-39
Identities = 75/113 (66%), Positives = 91/113 (80%)
Frame = +1
Query: 1 WSSMQEALERCTVPFSPDLVLEVLSRCQLYGHAALSFFTWMGKQARYNHNTETYNMAIKI 180
W +++ALE C+V FSP+LV+E+L +C L G AA +FF W+GKQ YNH TETYNMAIKI
Sbjct: 633 WKLIKKALENCSVEFSPELVIEILRKCSLDGCAAFNFFAWVGKQPGYNHTTETYNMAIKI 692
Query: 181 SGCAKDFTHMRNLYLEMKRRGCLITSDTWTIMIMQYGRAGLTEIALRKFEEMK 339
+G KDF HMR+L+ EM+RRGC IT TWTIMIMQY RAGLTEIAL+ +EEMK
Sbjct: 693 AGLGKDFKHMRSLFYEMRRRGCSITPYTWTIMIMQYARAGLTEIALKSYEEMK 745
Score = 76.3 bits (186), Expect = 3e-12
Identities = 42/111 (37%), Positives = 60/111 (54%)
Frame = +1
Query: 7 SMQEALERCTVPFSPDLVLEVLSRCQLYGHAALSFFTWMGKQARYNHNTETYNMAIKISG 186
SM+E L V FS ++V +VL RC + H AL FF W+ + + T +N + I+G
Sbjct: 145 SMEERLGNLDVMFSSEIVEKVLKRCFKFPHLALGFFNWVKSRDGFQCTTNVFNTVLSIAG 204
Query: 187 CAKDFTHMRNLYLEMKRRGCLITSDTWTIMIMQYGRAGLTEIALRKFEEMK 339
A+DF + L EM+ L TWTI+I YG A LT +L + +MK
Sbjct: 205 EARDFKLIDKLLEEMESYSLLKDIKTWTILISLYGNAKLTGKSLMVYSKMK 255
>ref|XP_002524089.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223536657|gb|EEF38299.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 1072
Score = 163 bits (412), Expect = 2e-38
Identities = 74/113 (65%), Positives = 90/113 (79%)
Frame = +1
Query: 1 WSSMQEALERCTVPFSPDLVLEVLSRCQLYGHAALSFFTWMGKQARYNHNTETYNMAIKI 180
W MQEALE+CT+ F+P LVLE+L C ++G+AAL FF+W+G Q Y H ETYNMA+KI
Sbjct: 669 WCIMQEALEKCTLQFTPGLVLEILHNCSMHGNAALKFFSWLGVQTGYCHTKETYNMAMKI 728
Query: 181 SGCAKDFTHMRNLYLEMKRRGCLITSDTWTIMIMQYGRAGLTEIALRKFEEMK 339
SG KDF HMR+L+ EM+R+GCLIT DTW IMIMQYGR GLTEI+L+ F EMK
Sbjct: 729 SGREKDFKHMRSLFYEMRRKGCLITPDTWAIMIMQYGRTGLTEISLKTFTEMK 781
Score = 80.5 bits (197), Expect = 1e-13
Identities = 43/111 (38%), Positives = 65/111 (58%)
Frame = +1
Query: 7 SMQEALERCTVPFSPDLVLEVLSRCQLYGHAALSFFTWMGKQARYNHNTETYNMAIKISG 186
+M+E LE F P++V +VL RC H A FF+W+ + + H T+TY + I+G
Sbjct: 162 AMEERLENLGFYFEPEIVEKVLKRCFKVPHLAFRFFSWVKMRDGFCHTTKTYYTMLYIAG 221
Query: 187 CAKDFTHMRNLYLEMKRRGCLITSDTWTIMIMQYGRAGLTEIALRKFEEMK 339
AK+F + +L EM++ C TW+I+I Q+G+A L AL FE+MK
Sbjct: 222 EAKEFKVVDDLVEEMEKNSCEKDIKTWSILISQFGKAKLIGKALLFFEKMK 272
>ref|XP_002871218.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297317055|gb|EFH47477.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 1029
Score = 156 bits (394), Expect = 2e-36
Identities = 69/113 (61%), Positives = 89/113 (78%)
Frame = +1
Query: 1 WSSMQEALERCTVPFSPDLVLEVLSRCQLYGHAALSFFTWMGKQARYNHNTETYNMAIKI 180
W QEALE+ TV F+P+LV+EVL ++ G+A L FF+W+GK+ Y HN+E YNM+IK+
Sbjct: 626 WERTQEALEKLTVQFTPELVVEVLRNAKIQGNAVLRFFSWVGKRNGYKHNSEAYNMSIKV 685
Query: 181 SGCAKDFTHMRNLYLEMKRRGCLITSDTWTIMIMQYGRAGLTEIALRKFEEMK 339
+GC KDF MR+L+ EM+R+GCLIT DTW IMIMQYGR GLT IA+R F+EMK
Sbjct: 686 AGCGKDFKQMRSLFYEMRRQGCLITQDTWAIMIMQYGRTGLTNIAIRTFKEMK 738
Score = 72.0 bits (175), Expect = 5e-11
Identities = 38/111 (34%), Positives = 59/111 (53%)
Frame = +1
Query: 7 SMQEALERCTVPFSPDLVLEVLSRCQLYGHAALSFFTWMGKQARYNHNTETYNMAIKISG 186
SM++ LE + F P++V VL RC H A+ FF W+ + ++H YN + I+G
Sbjct: 140 SMEDRLEILSFRFEPEIVENVLKRCFKVPHLAMRFFNWVKLKDGFSHRVGIYNTMLSIAG 199
Query: 187 CAKDFTHMRNLYLEMKRRGCLITSDTWTIMIMQYGRAGLTEIALRKFEEMK 339
A++ + L EM++ C TWTI+I YG+A L FE+M+
Sbjct: 200 EARNLDMVDELVKEMEKHACDKDIRTWTILISVYGKAKKIGKGLLVFEKMR 250
>ref|NP_196258.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171850|sp|Q9FNG8.1|PP366_ARATH RecName:
Full=Putative pentatricopeptide repeat-containing
protein At5g06400, mitochondrial; Flags: Precursor
gi|9758420|dbj|BAB08962.1| unnamed protein product
[Arabidopsis thaliana] gi|332003627|gb|AED91010.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 1030
Score = 156 bits (394), Expect = 2e-36
Identities = 69/113 (61%), Positives = 89/113 (78%)
Frame = +1
Query: 1 WSSMQEALERCTVPFSPDLVLEVLSRCQLYGHAALSFFTWMGKQARYNHNTETYNMAIKI 180
W QEALE+ TV F+P+LV+EVL ++ G+A L FF+W+GK+ Y HN+E YNM+IK+
Sbjct: 628 WERTQEALEKSTVQFTPELVVEVLRHAKIQGNAVLRFFSWVGKRNGYKHNSEAYNMSIKV 687
Query: 181 SGCAKDFTHMRNLYLEMKRRGCLITSDTWTIMIMQYGRAGLTEIALRKFEEMK 339
+GC KDF MR+L+ EM+R+GCLIT DTW IMIMQYGR GLT IA+R F+EMK
Sbjct: 688 AGCGKDFKQMRSLFYEMRRQGCLITQDTWAIMIMQYGRTGLTNIAIRTFKEMK 740
Score = 77.4 bits (189), Expect = 1e-12
Identities = 39/111 (35%), Positives = 62/111 (55%)
Frame = +1
Query: 7 SMQEALERCTVPFSPDLVLEVLSRCQLYGHAALSFFTWMGKQARYNHNTETYNMAIKISG 186
SM++ LE+ + F P++V VL RC H A+ FF W+ ++ ++H YN + I+G
Sbjct: 141 SMEDRLEKLSFRFEPEIVENVLKRCFKVPHLAMRFFNWVKQKDGFSHRVGIYNTMLSIAG 200
Query: 187 CAKDFTHMRNLYLEMKRRGCLITSDTWTIMIMQYGRAGLTEIALRKFEEMK 339
A++ + L EM++ GC TWTI+I YG+A L FE+M+
Sbjct: 201 EARNLDMVDELVSEMEKNGCDKDIRTWTILISVYGKAKKIGKGLLVFEKMR 251