BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00016791
         (754 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containi...   298   1e-78
emb|CBI19955.3| unnamed protein product [Vitis vinifera]              292   6e-77
ref|XP_003561267.1| PREDICTED: pentatricopeptide repeat-containi...   264   1e-68
ref|XP_002461793.1| hypothetical protein SORBIDRAFT_02g008110 [S...   263   2e-68
tpg|DAA39783.1| TPA: hypothetical protein ZEAMMB73_012385 [Zea m...   259   4e-67

>ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 658

 Score =  298 bits (762), Expect = 1e-78
 Identities = 146/251 (58%), Positives = 186/251 (74%)
 Frame = -1

Query: 754 KDAFFTYNSMHASSIGVNTFTFTILLKTCKLPQDIIMGKEIHAHVMKLGFGYSVFVQNAL 575
           K+A   Y+ M A  +  N+FTFT LLK  +  Q +  G+ IH  ++KLGFG SVFVQN+L
Sbjct: 56  KEALRVYSRMKALMVEANSFTFTFLLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNSL 115

Query: 574 LDFYCKCSESFEFSRRVFDEMLERDVVSWNSMMGAYMAHGEKVLVMELFDTMPERSIVSW 395
           L FY  CSE+   + RVF+EM ERDV+SWNSM+ AYM  GE    + L D MPER+IV+W
Sbjct: 116 LGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNIVTW 175

Query: 394 NSMVSWLCRDGDMERAQSIFECMPVRNEVSWNTMISGYVGKGDIRNAKLVFDRMPEKSVV 215
           NS+V  L + G+ME A S+FE MP+RNEVSWN+MISGYV  GD+R A+ +F +MPEK+VV
Sbjct: 176 NSVVCGLSKAGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIFYQMPEKTVV 235

Query: 214 SWTAMISGYAKVGELSSANKLFGLMPLKNVVTWNAMIAGYVQNNMFDEALTLFHEMLSNG 35
           SWTAMISGYA  G+L SA  +F  MP+KNVV+WNAMI+GYV N+ FD+AL +FH ML NG
Sbjct: 236 SWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLING 295

Query: 34  ECTPNEATLVS 2
           EC P++ TL+S
Sbjct: 296 ECRPDQTTLIS 306



 Score = 83.2 bits (204), Expect = 5e-14
 Identities = 63/265 (23%), Positives = 118/265 (44%), Gaps = 57/265 (21%)
 Frame = -1

Query: 667 KLPQ-DIIMGKEIHAHVMKLG---FGYSVFVQ---------NALLDFYCKCSESFEFSRR 527
           K+P+ +I+    +   + K G     +SVF Q         N+++  Y +  +    ++ 
Sbjct: 166 KMPERNIVTWNSVVCGLSKAGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGD-VRAAQS 224

Query: 526 VFDEMLERDVVSWNSMMGAYMAHGEKVLVMELFDTMPERSIVSWNSMVSWLCRDGDMERA 347
           +F +M E+ VVSW +M+  Y  +G+      +F+ MP +++VSWN+M+S    + + ++A
Sbjct: 225 IFYQMPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQA 284

Query: 346 QSIF-------ECMPVRNEV----------------SW-----------------NTMIS 287
             +F       EC P +  +                 W                 N +I 
Sbjct: 285 LCVFHHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALID 344

Query: 286 GYVGKGDIRNAKLVFDRMPEKSVVSWTAMISGYAKVGELSSANKLFGLMPLKNV----VT 119
            +   GD+ NAK VF  M ++ +++WT M+SG A  G+   A  LF  M L+      V 
Sbjct: 345 MFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVI 404

Query: 118 WNAMIAGYVQNNMFDEALTLFHEML 44
           + A+++      + +E   +F +M+
Sbjct: 405 FIAVLSACTHGGLVEEGKRVFDQMV 429


>emb|CBI19955.3| unnamed protein product [Vitis vinifera]
          Length = 488

 Score =  292 bits (747), Expect = 6e-77
 Identities = 143/242 (59%), Positives = 181/242 (74%)
 Frame = -1

Query: 727 MHASSIGVNTFTFTILLKTCKLPQDIIMGKEIHAHVMKLGFGYSVFVQNALLDFYCKCSE 548
           M A  +  N+FTFT LLK  +  Q +  G+ IH  ++KLGFG SVFVQN+LL FY  CSE
Sbjct: 1   MKALMVEANSFTFTFLLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNSLLGFYANCSE 60

Query: 547 SFEFSRRVFDEMLERDVVSWNSMMGAYMAHGEKVLVMELFDTMPERSIVSWNSMVSWLCR 368
           +   + RVF+EM ERDV+SWNSM+ AYM  GE    + L D MPER+IV+WNS+V  L +
Sbjct: 61  NLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNIVTWNSVVCGLSK 120

Query: 367 DGDMERAQSIFECMPVRNEVSWNTMISGYVGKGDIRNAKLVFDRMPEKSVVSWTAMISGY 188
            G+ME A S+FE MP+RNEVSWN+MISGYV  GD+R A+ +F +MPEK+VVSWTAMISGY
Sbjct: 121 AGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIFYQMPEKTVVSWTAMISGY 180

Query: 187 AKVGELSSANKLFGLMPLKNVVTWNAMIAGYVQNNMFDEALTLFHEMLSNGECTPNEATL 8
           A  G+L SA  +F  MP+KNVV+WNAMI+GYV N+ FD+AL +FH ML NGEC P++ TL
Sbjct: 181 ATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTL 240

Query: 7   VS 2
           +S
Sbjct: 241 IS 242



 Score = 83.2 bits (204), Expect = 5e-14
 Identities = 63/265 (23%), Positives = 118/265 (44%), Gaps = 57/265 (21%)
 Frame = -1

Query: 667 KLPQ-DIIMGKEIHAHVMKLG---FGYSVFVQ---------NALLDFYCKCSESFEFSRR 527
           K+P+ +I+    +   + K G     +SVF Q         N+++  Y +  +    ++ 
Sbjct: 102 KMPERNIVTWNSVVCGLSKAGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGD-VRAAQS 160

Query: 526 VFDEMLERDVVSWNSMMGAYMAHGEKVLVMELFDTMPERSIVSWNSMVSWLCRDGDMERA 347
           +F +M E+ VVSW +M+  Y  +G+      +F+ MP +++VSWN+M+S    + + ++A
Sbjct: 161 IFYQMPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQA 220

Query: 346 QSIF-------ECMPVRNEV----------------SW-----------------NTMIS 287
             +F       EC P +  +                 W                 N +I 
Sbjct: 221 LCVFHHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALID 280

Query: 286 GYVGKGDIRNAKLVFDRMPEKSVVSWTAMISGYAKVGELSSANKLFGLMPLKNV----VT 119
            +   GD+ NAK VF  M ++ +++WT M+SG A  G+   A  LF  M L+      V 
Sbjct: 281 MFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVI 340

Query: 118 WNAMIAGYVQNNMFDEALTLFHEML 44
           + A+++      + +E   +F +M+
Sbjct: 341 FIAVLSACTHGGLVEEGKRVFDQMV 365


>ref|XP_003561267.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 588

 Score =  264 bits (675), Expect = 1e-68
 Identities = 129/253 (50%), Positives = 173/253 (68%), Gaps = 2/253 (0%)
 Frame = -1

Query: 754 KDAFFTYNSMHASSIGVNTFTFTILLKTCKLPQDIIMGKEIHAHVMKLGFGYSVFVQNAL 575
           +DA   Y +M A  +  N FTFT LL+ C+  + + + + IH  ++K GFG  V VQNAL
Sbjct: 85  EDALTAYTAMRAVEVPPNGFTFTFLLRACEFSRILPLCRRIHGQILKCGFGRDVVVQNAL 144

Query: 574 LDFYCKCSESFEF--SRRVFDEMLERDVVSWNSMMGAYMAHGEKVLVMELFDTMPERSIV 401
           LD Y KCS       +R+VFDEM+E+DV+SWNS++G YM+ G+    MELF+ MPER++V
Sbjct: 145 LDVYHKCSNPGYVGDARQVFDEMIEKDVISWNSIVGVYMSSGDVKGAMELFEVMPERNVV 204

Query: 400 SWNSMVSWLCRDGDMERAQSIFECMPVRNEVSWNTMISGYVGKGDIRNAKLVFDRMPEKS 221
           SWN++V+   R GDM  AQ++F+ MP RN +SWN MISGY   GD+  A+ +F +  +K 
Sbjct: 205 SWNTVVASFARVGDMASAQAVFDRMPTRNAISWNLMISGYAAGGDVEAARSIFYQTDQKD 264

Query: 220 VVSWTAMISGYAKVGELSSANKLFGLMPLKNVVTWNAMIAGYVQNNMFDEALTLFHEMLS 41
           VVSWTAMIS YAK+G L  A +LF  MP+KN+V+WNAMI GY  N+ +DEAL  F  M+ 
Sbjct: 265 VVSWTAMISAYAKIGNLDLAKELFDQMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMML 324

Query: 40  NGECTPNEATLVS 2
            G   P+EATLVS
Sbjct: 325 EGRFRPDEATLVS 337


>ref|XP_002461793.1| hypothetical protein SORBIDRAFT_02g008110 [Sorghum bicolor]
           gi|241925170|gb|EER98314.1| hypothetical protein
           SORBIDRAFT_02g008110 [Sorghum bicolor]
          Length = 601

 Score =  263 bits (673), Expect = 2e-68
 Identities = 125/252 (49%), Positives = 176/252 (69%), Gaps = 2/252 (0%)
 Frame = -1

Query: 751 DAFFTYNSMHASSIGVNTFTFTILLKTCKLPQDIIMGKEIHAHVMKLGFGYSVFVQNALL 572
           DAF  Y +M A+ +  N FTFT LL+ C+  + + + + +H  +++ GFG  V VQNALL
Sbjct: 95  DAFAAYTAMRAAGVSPNGFTFTFLLRACESLRRLPLCRCVHGQIVRCGFGSDVVVQNALL 154

Query: 571 DFYCKCSESFEF--SRRVFDEMLERDVVSWNSMMGAYMAHGEKVLVMELFDTMPERSIVS 398
           + Y KC +  +   +R+VFD M +RDVVSWNS++G YM+ G+    MELF+ +PER++VS
Sbjct: 155 NVYYKCGDPGDVGVARKVFDGMADRDVVSWNSIVGVYMSSGDTTGAMELFEAIPERNVVS 214

Query: 397 WNSMVSWLCRDGDMERAQSIFECMPVRNEVSWNTMISGYVGKGDIRNAKLVFDRMPEKSV 218
           WN++V+   R GDM  A ++F+ MP+R+ +SWN MISGY G G++ +A+ +FD M  K V
Sbjct: 215 WNTIVAAFTRAGDMVSAHAVFDRMPIRDAISWNLMISGYAGSGNVESARTLFDLMDRKDV 274

Query: 217 VSWTAMISGYAKVGELSSANKLFGLMPLKNVVTWNAMIAGYVQNNMFDEALTLFHEMLSN 38
           VSWTAM+S YAK+G+L SA  LF  MP KN+V+WNAMI GY  N+ +DEAL  F +M+  
Sbjct: 275 VSWTAMVSAYAKIGDLDSARVLFDQMPDKNLVSWNAMITGYNHNSRYDEALRTFQQMMLE 334

Query: 37  GECTPNEATLVS 2
           G   P+EATLVS
Sbjct: 335 GRFMPDEATLVS 346



 Score =  103 bits (257), Expect = 4e-20
 Identities = 66/204 (32%), Positives = 94/204 (46%), Gaps = 40/204 (19%)
 Frame = -1

Query: 526 VFDEMLERDVVSWNSMMGAYMAHGEKVLVMELFDTMPERSIVSWNSMVSWLCRDGDMERA 347
           VFD M  RD +SWN M+  Y   G       LFD M  + +VSW +MVS   + GD++ A
Sbjct: 234 VFDRMPIRDAISWNLMISGYAGSGNVESARTLFDLMDRKDVVSWTAMVSAYAKIGDLDSA 293

Query: 346 QSIFECMPVRNEVSWNTMISGYVGKGDIRNAKLVFDRM-------PEK----SVVS---- 212
           + +F+ MP +N VSWN MI+GY        A   F +M       P++    SVVS    
Sbjct: 294 RVLFDQMPDKNLVSWNAMITGYNHNSRYDEALRTFQQMMLEGRFMPDEATLVSVVSACAQ 353

Query: 211 --------W-----------------TAMISGYAKVGELSSANKLFGLMPLKNVVTWNAM 107
                   W                  A+I  +AK G++  A   F  M  + V+TW  M
Sbjct: 354 LGSVEYCNWISSYISKSNTHITVALGNALIDMFAKCGDVGRARLAFDKMKTRCVITWTTM 413

Query: 106 IAGYVQNNMFDEALTLFHEMLSNG 35
           I+G+  N  F EAL ++ ++   G
Sbjct: 414 ISGFAYNGQFREALLIYSDICREG 437


>tpg|DAA39783.1| TPA: hypothetical protein ZEAMMB73_012385 [Zea mays]
          Length = 590

 Score =  259 bits (662), Expect = 4e-67
 Identities = 126/252 (50%), Positives = 175/252 (69%), Gaps = 2/252 (0%)
 Frame = -1

Query: 751 DAFFTYNSMHASSIGVNTFTFTILLKTCKLPQDIIMGKEIHAHVMKLGFGYSVFVQNALL 572
           DA   Y +M A+ +  N FTFT LL+ C+  + + + + +H  +++ GFG  V VQNALL
Sbjct: 98  DALAAYAAMRAAGVYPNGFTFTFLLRACESLRRLFLCRCVHGQIVRCGFGSDVVVQNALL 157

Query: 571 DFYCKCSESFE--FSRRVFDEMLERDVVSWNSMMGAYMAHGEKVLVMELFDTMPERSIVS 398
           + Y KCS+  +   +R+VFDEM  RDVVSWNS++G YM++G+    MELF+ MPER++VS
Sbjct: 158 NVYYKCSDPGDVGIARQVFDEMANRDVVSWNSIVGVYMSNGDAAGAMELFEAMPERNVVS 217

Query: 397 WNSMVSWLCRDGDMERAQSIFECMPVRNEVSWNTMISGYVGKGDIRNAKLVFDRMPEKSV 218
           WN++V+   R GDM  A+++F+ MP+R+ +SWN MISGY   G++ +A  +FD M  K V
Sbjct: 218 WNTIVAAFTRAGDMVSARAVFDRMPIRDAISWNLMISGYATSGNVESAWSLFDIMDRKDV 277

Query: 217 VSWTAMISGYAKVGELSSANKLFGLMPLKNVVTWNAMIAGYVQNNMFDEALTLFHEMLSN 38
           VSWTAM+S YAK+GEL SA  LF  MP KN+V+WNAMI GY  N  +D+AL  F +M+  
Sbjct: 278 VSWTAMVSAYAKIGELDSARVLFDQMPDKNLVSWNAMITGYNHNLRYDDALCTFQQMMLE 337

Query: 37  GECTPNEATLVS 2
           G   P+EATLVS
Sbjct: 338 GRFMPDEATLVS 349



 Score =  105 bits (261), Expect = 1e-20
 Identities = 65/207 (31%), Positives = 99/207 (47%), Gaps = 40/207 (19%)
 Frame = -1

Query: 535 SRRVFDEMLERDVVSWNSMMGAYMAHGEKVLVMELFDTMPERSIVSWNSMVSWLCRDGDM 356
           +R VFD M  RD +SWN M+  Y   G       LFD M  + +VSW +MVS   + G++
Sbjct: 234 ARAVFDRMPIRDAISWNLMISGYATSGNVESAWSLFDIMDRKDVVSWTAMVSAYAKIGEL 293

Query: 355 ERAQSIFECMPVRNEVSWNTMISGYVGKGDIRNAKLVFDRM-------PEK----SVVS- 212
           + A+ +F+ MP +N VSWN MI+GY       +A   F +M       P++    SVVS 
Sbjct: 294 DSARVLFDQMPDKNLVSWNAMITGYNHNLRYDDALCTFQQMMLEGRFMPDEATLVSVVSA 353

Query: 211 -----------W-----------------TAMISGYAKVGELSSANKLFGLMPLKNVVTW 116
                      W                  A++  +AK G++  A+ +F  M  +  +TW
Sbjct: 354 CAQLGSVEYCNWISSYISKSNTHITVALGNALVDMFAKCGDVGRAHLVFNKMKTRCTITW 413

Query: 115 NAMIAGYVQNNMFDEALTLFHEMLSNG 35
             MI+G+  N  F EAL ++++M   G
Sbjct: 414 TTMISGFAYNGQFREALLVYNDMCREG 440