BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00016734
         (980 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002307132.1| predicted protein [Populus trichocarpa] gi|2...    58   3e-06
gb|ACF06509.1| RNA polymerase II 15.9 kDa subunit [Elaeis guinee...    58   4e-06
ref|XP_002282413.1| PREDICTED: DNA-directed RNA polymerase II su...    57   9e-06

>ref|XP_002307132.1| predicted protein [Populus trichocarpa]
           gi|224096326|ref|XP_002310604.1| predicted protein
           [Populus trichocarpa] gi|222853507|gb|EEE91054.1|
           predicted protein [Populus trichocarpa]
           gi|222856581|gb|EEE94128.1| predicted protein [Populus
           trichocarpa]
          Length = 138

 Score = 58.2 bits (139), Expect = 3e-06
 Identities = 27/40 (67%), Positives = 30/40 (75%)
 Frame = +3

Query: 480 CLMNWEVAFILDRKYEQLHQMSDDPMNQVSQCLRKHVNLI 599
           CLMN EVA IL+ KYEQL QMSDDPMNQVSQ   K +  +
Sbjct: 23  CLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKSLQYV 62


>gb|ACF06509.1| RNA polymerase II 15.9 kDa subunit [Elaeis guineensis]
          Length = 138

 Score = 57.8 bits (138), Expect = 4e-06
 Identities = 26/40 (65%), Positives = 30/40 (75%)
 Frame = +3

Query: 480 CLMNWEVAFILDRKYEQLHQMSDDPMNQVSQCLRKHVNLI 599
           CLMN EVA ILDRKYEQL Q+SDDP NQ+SQ   K +  +
Sbjct: 23  CLMNCEVALILDRKYEQLQQLSDDPTNQISQVFEKSMQYV 62


>ref|XP_002282413.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Vitis
           vinifera] gi|147856183|emb|CAN80281.1| hypothetical
           protein VITISV_017448 [Vitis vinifera]
           gi|302143481|emb|CBI22042.3| unnamed protein product
           [Vitis vinifera]
          Length = 138

 Score = 56.6 bits (135), Expect = 9e-06
 Identities = 26/40 (65%), Positives = 30/40 (75%)
 Frame = +3

Query: 480 CLMNWEVAFILDRKYEQLHQMSDDPMNQVSQCLRKHVNLI 599
           CLMN EVA IL+ KYEQL QMSDDP+NQVSQ   K +  +
Sbjct: 23  CLMNCEVAVILEHKYEQLQQMSDDPLNQVSQVFEKSLQYV 62