BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00016699
         (1305 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI17913.3| unnamed protein product [Vitis vinifera]              232   1e-58
ref|XP_002263967.1| PREDICTED: DNA ligase 4-like [Vitis vinifera]     232   1e-58
ref|XP_003546435.1| PREDICTED: DNA ligase 4-like [Glycine max]        189   1e-45
ref|XP_002325262.1| predicted protein [Populus trichocarpa] gi|2...   187   7e-45
ref|XP_004165348.1| PREDICTED: LOW QUALITY PROTEIN: DNA ligase 4...   177   5e-42

>emb|CBI17913.3| unnamed protein product [Vitis vinifera]
          Length = 1163

 Score =  232 bits (592), Expect = 1e-58
 Identities = 152/379 (40%), Positives = 211/379 (55%), Gaps = 19/379 (5%)
 Frame = +1

Query: 4    DCQIYF-PLLNPLNTDWEILLELALKRMKLEVYMHGGEISNKLAHATHLVVLSVPGSDVD 180
            DC I F   +   N+DWE+L +LAL+RMKLEV M GG++ N L+ ATHLVV SVPG D+D
Sbjct: 805  DCCICFHSSIQSSNSDWELLSKLALRRMKLEVSMGGGKVGNNLSQATHLVVFSVPGFDLD 864

Query: 181  VETFFKSLSVSDRRLLHSKRLYVVQYQWLEDSFEKDRKLNEDAYSLKLAELEESNTEISK 360
                 +S S +++ LL +K+L+VV YQWLE   E+ R+L E  YSLK   LEESN    K
Sbjct: 865  FSDIMESFSPAEKHLLCNKKLHVVGYQWLEGCLEEGRRLQEQKYSLKPEGLEESNFGECK 924

Query: 361  HVL--ETLSSIDDAERENISASPVKDVEQSGGKPAVQEHRISTFSERNGKRKRGRPTQAN 534
            H +  E  S +D  E +N+ + P K+ +Q  GK   +   I    +R+ KRKRGRP   +
Sbjct: 925  HDIDVEAPSVLDSVENQNLVSFPDKEGKQGRGKAPPESISILASPKRDEKRKRGRPAGPS 984

Query: 535  MKTRTNMKRRNIRGRPGHRAAKIDENEIENSASSDDALHKDEVGSSGIHKRILEEDVGTK 714
             K          +G+ G   A+     I         ++++E  +S   +++ EE     
Sbjct: 985  TK----------KGKAGFSQARRTRPRI----GKPPKIYENESDASDSGEKMEEEGTKMG 1030

Query: 715  GNKGPVSIDTLHGDEAAEWSDKVDTTDLGGGNNSQYTEMAERSA---NVH---------- 855
            GN        +HG E  E  +  +T  +    +SQ  +  E+     NV           
Sbjct: 1031 GN------HAIHGVECKECPEIQETEIVEDSESSQRGKTEEKEVALDNVREKWLDRAQDI 1084

Query: 856  EIEREVKKNAS---EKLEVMVDPLEAMLLDMIPSLGVEKPETTNPVFEGKKPCIDPVLEQ 1026
            E++ E K + S   EKLEVMVDP++AMLLDMIPSLGV+K E+TNP+ + +KP ++   E 
Sbjct: 1085 ELDSENKVDNSKKTEKLEVMVDPVQAMLLDMIPSLGVKKAESTNPIIDDEKPPVEQGAEP 1144

Query: 1027 GKKKKVSYKDVVGELLKDW 1083
             KKKKVSYKDV G LLKDW
Sbjct: 1145 VKKKKVSYKDVAGALLKDW 1163


>ref|XP_002263967.1| PREDICTED: DNA ligase 4-like [Vitis vinifera]
          Length = 1162

 Score =  232 bits (592), Expect = 1e-58
 Identities = 152/379 (40%), Positives = 211/379 (55%), Gaps = 19/379 (5%)
 Frame = +1

Query: 4    DCQIYF-PLLNPLNTDWEILLELALKRMKLEVYMHGGEISNKLAHATHLVVLSVPGSDVD 180
            DC I F   +   N+DWE+L +LAL+RMKLEV M GG++ N L+ ATHLVV SVPG D+D
Sbjct: 804  DCCICFHSSIQSSNSDWELLSKLALRRMKLEVSMGGGKVGNNLSQATHLVVFSVPGFDLD 863

Query: 181  VETFFKSLSVSDRRLLHSKRLYVVQYQWLEDSFEKDRKLNEDAYSLKLAELEESNTEISK 360
                 +S S +++ LL +K+L+VV YQWLE   E+ R+L E  YSLK   LEESN    K
Sbjct: 864  FSDIMESFSPAEKHLLCNKKLHVVGYQWLEGCLEEGRRLQEQKYSLKPEGLEESNFGECK 923

Query: 361  HVL--ETLSSIDDAERENISASPVKDVEQSGGKPAVQEHRISTFSERNGKRKRGRPTQAN 534
            H +  E  S +D  E +N+ + P K+ +Q  GK   +   I    +R+ KRKRGRP   +
Sbjct: 924  HDIDVEAPSVLDSVENQNLVSFPDKEGKQGRGKAPPESISILASPKRDEKRKRGRPAGPS 983

Query: 535  MKTRTNMKRRNIRGRPGHRAAKIDENEIENSASSDDALHKDEVGSSGIHKRILEEDVGTK 714
             K          +G+ G   A+     I         ++++E  +S   +++ EE     
Sbjct: 984  TK----------KGKAGFSQARRTRPRI----GKPPKIYENESDASDSGEKMEEEGTKMG 1029

Query: 715  GNKGPVSIDTLHGDEAAEWSDKVDTTDLGGGNNSQYTEMAERSA---NVH---------- 855
            GN        +HG E  E  +  +T  +    +SQ  +  E+     NV           
Sbjct: 1030 GN------HAIHGVECKECPEIQETEIVEDSESSQRGKTEEKEVALDNVREKWLDRAQDI 1083

Query: 856  EIEREVKKNAS---EKLEVMVDPLEAMLLDMIPSLGVEKPETTNPVFEGKKPCIDPVLEQ 1026
            E++ E K + S   EKLEVMVDP++AMLLDMIPSLGV+K E+TNP+ + +KP ++   E 
Sbjct: 1084 ELDSENKVDNSKKTEKLEVMVDPVQAMLLDMIPSLGVKKAESTNPIIDDEKPPVEQGAEP 1143

Query: 1027 GKKKKVSYKDVVGELLKDW 1083
             KKKKVSYKDV G LLKDW
Sbjct: 1144 VKKKKVSYKDVAGALLKDW 1162


>ref|XP_003546435.1| PREDICTED: DNA ligase 4-like [Glycine max]
          Length = 1171

 Score =  189 bits (480), Expect = 1e-45
 Identities = 140/381 (36%), Positives = 193/381 (50%), Gaps = 22/381 (5%)
 Frame = +1

Query: 7    CQIYFPLLNP-LNTDWEILLELALKRMKLEVYMHGGEISNKLAHATHLVVLSVPGSDVDV 183
            C IYF    P L +DW  +L+LA++R+KLEV M GG++++ L  ATHLVVL VPG   D 
Sbjct: 805  CSIYFHSAIPSLKSDWHFILQLAVRRLKLEVLMGGGKVTSNLTCATHLVVLLVPGYQTDF 864

Query: 184  ETFFKSLSVSDRRLLHSKRLYVVQYQWLEDSFEKDRKLNEDAYSLKLAELEESNTEISKH 363
            E    S +   R++L SKRL++V+ QWLED  +  ++L ED+YSLK   +EE+  E  + 
Sbjct: 865  EQIQSSFTSVKRKILRSKRLHIVKSQWLEDCSDSCQRLPEDSYSLKPWGIEETTAEDCEL 924

Query: 364  V--LETLSSIDDAERENISASPVKDVEQSGGKPAVQEHRISTFSERNGKRKRGRPTQANM 537
               LE   S D+ E +NIS S  K ++Q   K A ++       E+ GKRKRGRP  + +
Sbjct: 925  ELGLEAHQSGDNVEDQNISFSD-KGIQQRSSKAASEDSMALVSQEKGGKRKRGRPAGSGI 983

Query: 538  -KTRTNMKRRNIRGRP--GHRAAKIDENEIENSASSDDALHKDEVGSSGIHKRILEEDVG 708
             K +    ++  R RP    + AKI E E             DE  S G  KR +E+++ 
Sbjct: 984  KKVKQPAVKQARRARPQIAKKPAKICEYE-----------SSDESDSHG--KRPIEQEID 1030

Query: 709  T--------KGNKGPVSIDTLHGDEAAEWSDKVDTTDLGGG---NNSQYTEMAERSANVH 855
            T        K    P   +     + AE     +   L      N+++   M      + 
Sbjct: 1031 TRAGSLDFYKKRSEPQETEKRENVQVAEIEKNSEQNKLDKQKDLNDNERERMLVPEIEMS 1090

Query: 856  EIEREVKKNASEKLEVMVDPLEAMLLDMIPSLGVEKPE--TTNPVFEGKKPCIDPVLEQ- 1026
            +   E     +EKLE+  DPL+AML DMIPSL  +K E      V E K P       + 
Sbjct: 1091 DRHNEQNNEVTEKLEISADPLQAMLFDMIPSLATQKVEQPMNRSVREEKLPETSNAEAEP 1150

Query: 1027 --GKKKKVSYKDVVGELLKDW 1083
               KKKKVSYKDV  ELLKDW
Sbjct: 1151 MTTKKKKVSYKDVASELLKDW 1171


>ref|XP_002325262.1| predicted protein [Populus trichocarpa] gi|222866696|gb|EEF03827.1|
            predicted protein [Populus trichocarpa]
          Length = 1242

 Score =  187 bits (474), Expect = 7e-45
 Identities = 144/444 (32%), Positives = 206/444 (46%), Gaps = 88/444 (19%)
 Frame = +1

Query: 7    CQIYFPLLNP-LNTDWEILLELALKRMKLEVYMHGGEISNKLAHATHLVVLSVPGSDVDV 183
            C +YF +    L  DWE LL LA +R+KLE++M GG++SN +AHATHLVVL VP SDVD 
Sbjct: 814  CCVYFHISRESLTPDWESLLGLAFRRLKLEIFMGGGKVSNNIAHATHLVVLIVPASDVDF 873

Query: 184  ETFFKSLSVSDRRLLHSKRLYVVQYQWLEDSFEKDRKLNEDAYSLKLAELEESNTEISKH 363
             +  KS + +++  L +KRLYV+  QWLEDS E+ +KL ED Y+LK + LEESN +    
Sbjct: 874  GSLVKSFTTAEKHFLLNKRLYVIGSQWLEDSLERGQKLLEDTYNLKPSGLEESNCK---- 929

Query: 364  VLETLSSIDDAERENISASPVKDVEQSGGKPAVQEHRISTFSERNGKRKRGRPTQANMKT 543
              E L S+ D+E            ++ G K A+++       E+   RKRGRP   + K 
Sbjct: 930  --EVLPSVTDSE-----------AKEKGSKAALKDSNKLGSLEKETTRKRGRPAGGSTKK 976

Query: 544  RT--NMKRRNIRGRPGHRAAKIDENEIENSASSDDALHKDEV--GSSGIH-KRILEEDVG 708
                  + R  R R  ++ AKI   + + S S DD   ++++  G+  IH  +      G
Sbjct: 977  GKIGAGQARRTRARIVNKPAKISVEKSDESCSHDDKNEENDMSDGNEEIHGGKPAGRPAG 1036

Query: 709  TKGNKG-----------------PVSIDTLHGDEAAEWSDKVDTTDLGGGNN------SQ 819
                KG                 P  I     +E+    D+++  ++  GN       S+
Sbjct: 1037 GSTKKGKIGAGQALRTRTRIANKPAKILEEKSEESCLHDDEIEENEMSEGNEEIHGPVSK 1096

Query: 820  YTEMAERSANVHEIEREVKKNAS---------------------------------EKLE 900
            Y    +++  V + E   +  A                                  EKLE
Sbjct: 1097 YNLDIQQTKTVEDSESSRRDKAKEETAEENRHEEWLDKAPDVEMSERYYDQVTEKPEKLE 1156

Query: 901  VMVDPLEAMLLDMIPSLGVEKPETTNPVFEGKK----PCIDPVLEQGK------------ 1032
            VMVDP+ A+L+DMIPSLG++K ETTNP    +K    P   P L   K            
Sbjct: 1157 VMVDPVHAILMDMIPSLGMKKGETTNPTIGNEKQAEGPYAQPSLSMKKVENTTPTLDTEK 1216

Query: 1033 ----------KKKVSYKDVVGELL 1074
                      KKKVSYKD+  +LL
Sbjct: 1217 PSENPSLLPVKKKVSYKDLAAKLL 1240


>ref|XP_004165348.1| PREDICTED: LOW QUALITY PROTEIN: DNA ligase 4-like, partial [Cucumis
            sativus]
          Length = 918

 Score =  177 bits (449), Expect = 5e-42
 Identities = 132/418 (31%), Positives = 210/418 (50%), Gaps = 59/418 (14%)
 Frame = +1

Query: 7    CQIYF-PLLNPLNTDWEILLELALKRMKLEVYMHGGEISNKLAHATHLVVLSVPGSDVDV 183
            CQIYF PL   L +DW ILLEL+++R+K+EV   GG++S+    ATH++V  +PG+ V  
Sbjct: 508  CQIYFLPLRLSLKSDWGILLELSIRRLKVEVSFRGGKVSDDPVSATHIIVFEIPGAPVRY 567

Query: 184  ETFFKSLSVSDRRLLHSKRLYVVQYQWLEDSFEKDRKLNEDAYSLK---LAELEESNTEI 354
            ET  KS + +++  +   +++++ +QWLED  E  ++L ED+Y+L       +E  N  +
Sbjct: 568  ETVLKSCNEAEKHAMLKDKIHIIAHQWLEDCLEMAQRLQEDSYNLNPNGKRSIENINFGM 627

Query: 355  SKHVLETLSSIDDAERENISASPVKDVEQSGGKPAVQEHRISTFSERNGKRKRGRP-TQA 531
                 +T  +++D E   I     +  +Q   + A  +  +S  +ER   +KRGRP T++
Sbjct: 628  DS---DTPLALEDQENPQIPCPSKEYKDQGRNEAASGQQMLSHSTERYDGKKRGRPATRS 684

Query: 532  NMKTRTNMKR-RNIRGRPGHRAAKIDENEIENSASSDDALHKDEVGSSGI--------HK 684
              K ++++++ R  R R     AKI E E + S  +D+   K E G+ G         H+
Sbjct: 685  MQKAKSDVEQVRRARTRKAKGPAKISEVESDISDHTDEKT-KAETGNIGTLCTENSEKHE 743

Query: 685  -RILEEDVGTKGNKGPVSIDTLHGDEAAEWSDKVDTT---------DLGGGNNSQYTEMA 834
             + LE ++     +G         ++A   + K+  T         ++GG NNS  ++ A
Sbjct: 744  FKTLENEISNSKKRGRPPAGNAQREKAE--AGKIRRTRAHIAKGSANIGGINNSDSSDEA 801

Query: 835  ---------------------------ERSANVHEIEREVKK-NASEKLEVMVDPLEAML 930
                                       ++   + E+  + K     EKLEVM DPLEAML
Sbjct: 802  NAEESKRGKDENEKTNEFKMLEDCNAKQKGKAIEEVRADSKSVEKPEKLEVMKDPLEAML 861

Query: 931  LDMIPSLG-------VEKPETTNPVFEGKKPCIDPVLEQGKKKKVSYKDVVGELLKDW 1083
            LDM+PSLG       +    +++ V E KKP ++   E   KKKVSYKDV  ELLKDW
Sbjct: 862  LDMVPSLGMSGTKSSISSSSSSSTVVEEKKPFVENKSE-AVKKKVSYKDVASELLKDW 918