BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00016628
         (944 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002514998.1| alpha DNA polymerase, putative [Ricinus comm...    72   9e-25
ref|XP_003537544.1| PREDICTED: DNA polymerase alpha subunit B-li...    60   1e-17
ref|XP_003552790.1| PREDICTED: DNA polymerase alpha subunit B-li...    57   8e-17
ref|XP_001772028.1| predicted protein [Physcomitrella patens sub...    58   4e-14
ref|XP_002265789.1| PREDICTED: DNA polymerase alpha subunit B [V...    79   1e-12

>ref|XP_002514998.1| alpha DNA polymerase, putative [Ricinus communis]
           gi|223546049|gb|EEF47552.1| alpha DNA polymerase,
           putative [Ricinus communis]
          Length = 621

 Score = 71.6 bits (174), Expect(2) = 9e-25
 Identities = 34/53 (64%), Positives = 42/53 (79%)
 Frame = +2

Query: 452 PLMELLAYTTRKKS*LLTLMGPFVDSKHPKISKGTIERSFDGIFHSDILRRVQ 610
           PL ELLAY +RK   LL L+GPFVDS+HP+I KGT++ SFD IF  +ILRR+Q
Sbjct: 375 PLTELLAYASRKLPQLLILLGPFVDSEHPEIKKGTVDGSFDEIFRQEILRRLQ 427



 Score = 68.9 bits (167), Expect(2) = 9e-25
 Identities = 36/67 (53%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
 Frame = +3

Query: 663 LIQLQDYTEYMGYATRVILTPSLQDAYHDFDFPQPIFDIH-SDLKNQV*SYITRLTNTRL 839
           L +LQDY EYMG   +V++ PS +DA HDF FPQP FDIH S+L++Q+ S    LTN  +
Sbjct: 423 LRRLQDYVEYMGSDAQVLIVPSTRDANHDFVFPQPAFDIHRSNLQHQIRS----LTNPGI 478

Query: 840 FDANKVK 860
           F+AN+V+
Sbjct: 479 FEANQVR 485


>ref|XP_003537544.1| PREDICTED: DNA polymerase alpha subunit B-like [Glycine max]
          Length = 605

 Score = 60.1 bits (144), Expect(2) = 1e-17
 Identities = 32/63 (50%), Positives = 40/63 (63%)
 Frame = +3

Query: 672 LQDYTEYMGYATRVILTPSLQDAYHDFDFPQPIFDIHSDLKNQV*SYITRLTNTRLFDAN 851
           L+   EY+  ATRV+L PS++DA HDF FPQP FDI S         I  L+N  +F+AN
Sbjct: 417 LKKLEEYVDSATRVLLVPSIRDANHDFVFPQPAFDIKSQ--------IVSLSNPGIFEAN 468

Query: 852 KVK 860
           KVK
Sbjct: 469 KVK 471



 Score = 56.2 bits (134), Expect(2) = 1e-17
 Identities = 27/53 (50%), Positives = 39/53 (73%)
 Frame = +2

Query: 452 PLMELLAYTTRKKS*LLTLMGPFVDSKHPKISKGTIERSFDGIFHSDILRRVQ 610
           PL+ELL +   +   LL L+GPFVDS+HP I KGT++ SFD IF  +IL++++
Sbjct: 370 PLIELLKHAKLRPPQLLVLLGPFVDSEHPDIKKGTVDTSFDEIF-EEILKKLE 421


>ref|XP_003552790.1| PREDICTED: DNA polymerase alpha subunit B-like [Glycine max]
          Length = 606

 Score = 57.0 bits (136), Expect(2) = 8e-17
 Identities = 30/63 (47%), Positives = 39/63 (61%)
 Frame = +3

Query: 672 LQDYTEYMGYATRVILTPSLQDAYHDFDFPQPIFDIHSDLKNQV*SYITRLTNTRLFDAN 851
           L+   EY+  ATRV+L PS++DA HDF FPQP  D+ S         I  L+N  +F+AN
Sbjct: 418 LKKLEEYVDSATRVVLVPSIRDANHDFVFPQPALDMKSQ--------IVSLSNPGIFEAN 469

Query: 852 KVK 860
           KVK
Sbjct: 470 KVK 472



 Score = 56.6 bits (135), Expect(2) = 8e-17
 Identities = 27/53 (50%), Positives = 39/53 (73%)
 Frame = +2

Query: 452 PLMELLAYTTRKKS*LLTLMGPFVDSKHPKISKGTIERSFDGIFHSDILRRVQ 610
           PL+ LL +   +   LL L+GPFVDS+HP I KGT++RSFD IF  +IL++++
Sbjct: 371 PLIALLTHAKLRPPQLLVLLGPFVDSEHPDIKKGTVDRSFDEIF-EEILKKLE 422


>ref|XP_001772028.1| predicted protein [Physcomitrella patens subsp. patens]
           gi|162676629|gb|EDQ63109.1| predicted protein
           [Physcomitrella patens subsp. patens]
          Length = 635

 Score = 58.2 bits (139), Expect(2) = 4e-14
 Identities = 27/53 (50%), Positives = 37/53 (69%)
 Frame = +2

Query: 452 PLMELLAYTTRKKS*LLTLMGPFVDSKHPKISKGTIERSFDGIFHSDILRRVQ 610
           PL+EL AY  + +  LL LMGPFVDS+HP+I +GT+ + F  IF  +I  RV+
Sbjct: 374 PLVELFAYAKKVRPNLLILMGPFVDSEHPQIKQGTVGKLFSHIFQEEIRMRVE 426



 Score = 46.6 bits (109), Expect(2) = 4e-14
 Identities = 25/64 (39%), Positives = 38/64 (59%)
 Frame = +3

Query: 666 IQLQDYTEYMGYATRVILTPSLQDAYHDFDFPQPIFDIHSDLKNQV*SYITRLTNTRLFD 845
           ++++DY E MG   R++L PS +DA+HD  FPQP FD  +D        IT L+N  +  
Sbjct: 423 MRVEDYCEEMGDGCRIVLVPSHRDAHHDLIFPQPPFD--ADEFEDPNHQITLLSNPGVLK 480

Query: 846 ANKV 857
            ++V
Sbjct: 481 VDEV 484


>ref|XP_002265789.1| PREDICTED: DNA polymerase alpha subunit B [Vitis vinifera]
           gi|297738371|emb|CBI27572.3| unnamed protein product
           [Vitis vinifera]
          Length = 623

 Score = 79.3 bits (194), Expect = 1e-12
 Identities = 43/67 (64%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
 Frame = +3

Query: 663 LIQLQDYTEYMGYATRVILTPSLQDAYHDFDFPQPIFDIH-SDLKNQV*SYITRLTNTRL 839
           L +LQDY EYMG A RVIL PS++DA HDF FPQP F IH  DLK+Q    IT LTN  +
Sbjct: 425 LRRLQDYVEYMGSAARVILVPSIRDANHDFVFPQPAFSIHPPDLKHQ----ITSLTNPGM 480

Query: 840 FDANKVK 860
           FDAN+VK
Sbjct: 481 FDANEVK 487



 Score = 77.0 bits (188), Expect = 6e-12
 Identities = 40/71 (56%), Positives = 51/71 (71%)
 Frame = +2

Query: 452 PLMELLAYTTRKKS*LLTLMGPFVDSKHPKISKGTIERSFDGIFHSDILRRVQSLTIF*T 631
           PL ELLAY  RK   LL L+GPFVDS+HP+I KGT++RSFD IFH +ILRR+Q    +  
Sbjct: 377 PLTELLAYARRKMPQLLILLGPFVDSEHPEIRKGTVDRSFDEIFHLEILRRLQDYVEY-- 434

Query: 632 LGWKSFCILLP 664
           +G  +  IL+P
Sbjct: 435 MGSAARVILVP 445