BLASTX nr result
ID: Coptis23_contig00016583
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00016583
(627 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002284873.1| PREDICTED: tRNA-splicing endonuclease subuni... 120 1e-31
ref|XP_002313727.1| predicted protein [Populus trichocarpa] gi|2... 113 2e-30
gb|ABK93461.1| unknown [Populus trichocarpa] 111 6e-30
ref|XP_002526336.1| tRNA-splicing endonuclease subunit Sen2-2, p... 113 2e-27
ref|XP_004149565.1| PREDICTED: tRNA-splicing endonuclease subuni... 101 6e-26
>ref|XP_002284873.1| PREDICTED: tRNA-splicing endonuclease subunit Sen2-1 [Vitis
vinifera]
Length = 242
Score = 120 bits (300), Expect(2) = 1e-31
Identities = 68/133 (51%), Positives = 85/133 (63%), Gaps = 7/133 (5%)
Frame = -1
Query: 591 SEQVDLLN*ACFGCAIIDITTNEDTQQYELSLEEALYSFQSLKFLKIRWKEKCFKNSDKL 412
+EQ +LLN +CFG +I T +D Q ++LS+EEA Y SL LKI ++ KN ++L
Sbjct: 50 AEQTELLNRSCFGRPVI--TAEKDKQWFQLSMEEAFYLCHSLGCLKIVGEDNHLKNDEEL 107
Query: 411 WELMRLRRKQFSIFYKAYSHTRPKIWVVRSGIQYSVD------HPSLVHSEYAVIV-SEG 253
W+ M+ RR+ F FY AYSH R K WVVRSG QY VD HP+LVHSEYAV+V SE
Sbjct: 108 WQYMKSRRETFPDFYMAYSHLRIKNWVVRSGSQYGVDFVAYRHHPALVHSEYAVLVLSEE 167
Query: 252 NGNKNTCLLAWPD 214
N N N L W D
Sbjct: 168 NENANGRLRVWSD 180
Score = 42.4 bits (98), Expect(2) = 1e-31
Identities = 17/35 (48%), Positives = 27/35 (77%)
Frame = -3
Query: 163 HIEKHSYDAVSSSCLEQYTVEKQTVTR*NPEQCRE 59
HI K+ + A + CL++Y+VE++T+TR + EQCRE
Sbjct: 199 HINKNGHGATTPLCLKKYSVEERTITRWSAEQCRE 233
>ref|XP_002313727.1| predicted protein [Populus trichocarpa] gi|222850135|gb|EEE87682.1|
predicted protein [Populus trichocarpa]
Length = 235
Score = 113 bits (282), Expect(2) = 2e-30
Identities = 67/133 (50%), Positives = 84/133 (63%), Gaps = 7/133 (5%)
Frame = -1
Query: 591 SEQVDLLN*ACFGCAIIDITTNEDTQQYELSLEEALYSFQSLKFLKIRWKEKCFKNSDKL 412
+EQ +LL ACFG II T ++ Q ++L LEEA Y SLK LKI ++ KN L
Sbjct: 50 TEQTELLTRACFGKPII--TAEKEKQWFQLGLEEAFYLCYSLKCLKIAGEDNFVKNDLDL 107
Query: 411 WELMRLRRKQFSIFYKAYSHTRPKIWVVRSGIQYSVD------HPSLVHSEYAVIV-SEG 253
W M+L++++F FYKAYSH R K WV+R G+QY VD HPSLVHSEYAVIV SEG
Sbjct: 108 WLYMKLKKEKFPDFYKAYSHLRMKNWVLRPGLQYGVDFVAYQHHPSLVHSEYAVIVLSEG 167
Query: 252 NGNKNTCLLAWPD 214
+ + L W D
Sbjct: 168 DTGR---LRVWSD 177
Score = 45.1 bits (105), Expect(2) = 2e-30
Identities = 17/38 (44%), Positives = 32/38 (84%)
Frame = -3
Query: 163 HIEKHSYDAVSSSCLEQYTVEKQTVTR*NPEQCREERR 50
+++K+ + A+S SCLE+Y+VE+ T+TR +PEQ R++++
Sbjct: 196 NVDKNGHGAISPSCLERYSVEECTITRWSPEQSRDDKK 233
>gb|ABK93461.1| unknown [Populus trichocarpa]
Length = 235
Score = 111 bits (278), Expect(2) = 6e-30
Identities = 66/133 (49%), Positives = 84/133 (63%), Gaps = 7/133 (5%)
Frame = -1
Query: 591 SEQVDLLN*ACFGCAIIDITTNEDTQQYELSLEEALYSFQSLKFLKIRWKEKCFKNSDKL 412
+E+ +LL ACFG II T ++ Q ++L LEEA Y SLK LKI ++ KN L
Sbjct: 50 TEKTELLTRACFGKPII--TAEKEKQWFQLGLEEAFYLCYSLKCLKIAGEDNFVKNDLDL 107
Query: 411 WELMRLRRKQFSIFYKAYSHTRPKIWVVRSGIQYSVD------HPSLVHSEYAVIV-SEG 253
W M+L++++F FYKAYSH R K WV+R G+QY VD HPSLVHSEYAVIV SEG
Sbjct: 108 WLYMKLKKEKFPDFYKAYSHLRMKNWVLRPGLQYGVDFVAYQHHPSLVHSEYAVIVLSEG 167
Query: 252 NGNKNTCLLAWPD 214
+ + L W D
Sbjct: 168 DTGR---LRVWSD 177
Score = 45.1 bits (105), Expect(2) = 6e-30
Identities = 17/38 (44%), Positives = 32/38 (84%)
Frame = -3
Query: 163 HIEKHSYDAVSSSCLEQYTVEKQTVTR*NPEQCREERR 50
+++K+ + A+S SCLE+Y+VE+ T+TR +PEQ R++++
Sbjct: 196 NVDKNGHGAISPSCLERYSVEECTITRWSPEQSRDDKK 233
>ref|XP_002526336.1| tRNA-splicing endonuclease subunit Sen2-2, putative [Ricinus
communis] gi|223534295|gb|EEF36007.1| tRNA-splicing
endonuclease subunit Sen2-2, putative [Ricinus communis]
Length = 237
Score = 113 bits (283), Expect(2) = 2e-27
Identities = 65/133 (48%), Positives = 83/133 (62%), Gaps = 7/133 (5%)
Frame = -1
Query: 591 SEQVDLLN*ACFGCAIIDITTNEDTQQYELSLEEALYSFQSLKFLKIRWKEKCFKNSDKL 412
SEQ +LL ACFG +I T+ +D Q ++L +EEA Y SLK +KI ++ C + +L
Sbjct: 50 SEQTELLTRACFGRPMI--TSEKDKQWFQLGIEEAFYLSYSLKCIKIVSEDNCCISDLEL 107
Query: 411 WELMRLRRKQFSIFYKAYSHTRPKIWVVRSGIQYSVD------HPSLVHSEYAVIV-SEG 253
W+ M+ ++ F FYKAYSH R K WVVR G QY VD HPSLVHSEYAV+V SE
Sbjct: 108 WQFMKSQKPTFPDFYKAYSHLRMKNWVVRPGSQYGVDFVAYRHHPSLVHSEYAVLVLSEE 167
Query: 252 NGNKNTCLLAWPD 214
+ N N L W D
Sbjct: 168 DANANGRLRVWSD 180
Score = 34.7 bits (78), Expect(2) = 2e-27
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = -3
Query: 160 IEKHSYDAVSSSCLEQYTVEKQTVTR*NPEQCRE 59
I K+ + SCLE+Y+VE++T R +P+Q RE
Sbjct: 200 INKNCHGTTLPSCLEKYSVEERTFARWSPQQSRE 233
>ref|XP_004149565.1| PREDICTED: tRNA-splicing endonuclease subunit Sen2-2-like [Cucumis
sativus]
Length = 281
Score = 101 bits (252), Expect(2) = 6e-26
Identities = 62/133 (46%), Positives = 75/133 (56%), Gaps = 8/133 (6%)
Frame = -1
Query: 588 EQVDLLN*ACFGCAIIDITTNEDTQQYELSLEEALYSFQSLKFLKIRWKEKCFKNSDKLW 409
EQ DLLN CFG I+ T +D Q ++ +EEA Y L LKI + C KN +LW
Sbjct: 93 EQTDLLNRTCFGRPIL--TAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELW 150
Query: 408 ELMRLRRKQFSIFYKAYSHTRPKIWVVRSGIQYSVD------HPSLVHSEYAVIV-SEG- 253
M+ ++ F FY AY H R K WVVR G QY VD HPSLVHSE+AV+V EG
Sbjct: 151 RYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGR 210
Query: 252 NGNKNTCLLAWPD 214
+ N N L W D
Sbjct: 211 DSNGNGRLRVWSD 223
Score = 41.6 bits (96), Expect(2) = 6e-26
Identities = 17/26 (65%), Positives = 23/26 (88%)
Frame = -3
Query: 136 VSSSCLEQYTVEKQTVTR*NPEQCRE 59
VS SCL+ Y++E++TVTR +PEQCRE
Sbjct: 251 VSPSCLDSYSIEERTVTRWSPEQCRE 276