BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00016551
         (782 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002531104.1| DNA repair and recombination protein radB, p...   206   4e-51
emb|CBI16200.3| unnamed protein product [Vitis vinifera]              190   3e-46
ref|XP_004148219.1| PREDICTED: DNA repair protein RAD51 homolog ...   185   8e-45
ref|XP_002281461.2| PREDICTED: DNA repair protein RAD51 homolog ...   184   1e-44
emb|CAN80345.1| hypothetical protein VITISV_003133 [Vitis vinifera]   179   6e-43

>ref|XP_002531104.1| DNA repair and recombination protein radB, putative [Ricinus
           communis] gi|223529300|gb|EEF31269.1| DNA repair and
           recombination protein radB, putative [Ricinus communis]
          Length = 315

 Score =  206 bits (525), Expect = 4e-51
 Identities = 98/149 (65%), Positives = 123/149 (82%)
 Frame = -2

Query: 733 MNNIVCHSVFDIFGLLDVLNHLEFTLRSQGKTGDGKLRLLVIDSISSLITPVLGGGGAHG 554
           M+NI+CHSVFDIF + DVL+ LE +LRSQG +GD K++ L++DSISSLITP+LGGGG+ G
Sbjct: 171 MSNILCHSVFDIFSMFDVLHQLEISLRSQGHSGDFKVQSLIVDSISSLITPILGGGGSQG 230

Query: 553 ICPWHCLMVSTGFLLKKLAHEHSLCVLVANHMVSGEGGSSKPALGESWKSVSHVRILLSH 374
               H LM S G LLKKLAHEH++ VLV NHMV+GEGG+ KPALGESWKS+ HVR+LLS 
Sbjct: 231 ----HALMTSAGILLKKLAHEHNIAVLVTNHMVAGEGGNFKPALGESWKSIPHVRLLLSR 286

Query: 373 DQESNLCNVSILKHPCMASGRSAKFSILD 287
           DQ  N+CNV+ILKHP  ASG++A+F++ D
Sbjct: 287 DQGKNVCNVTILKHPSQASGKAARFTVDD 315


>emb|CBI16200.3| unnamed protein product [Vitis vinifera]
          Length = 1093

 Score =  190 bits (483), Expect = 3e-46
 Identities = 92/154 (59%), Positives = 120/154 (77%)
 Frame = -2

Query: 769 FNQATKNGVKRTMNNIVCHSVFDIFGLLDVLNHLEFTLRSQGKTGDGKLRLLVIDSISSL 590
           F +  +N +++ M+ I+CHSVFDIF +LDV++ LE++LRSQ +TG  ++RLL++DSISSL
Sbjct: 217 FKEVKQNILEKVMSQILCHSVFDIFAMLDVVHQLEYSLRSQVQTGADQVRLLIVDSISSL 276

Query: 589 ITPVLGGGGAHGICPWHCLMVSTGFLLKKLAHEHSLCVLVANHMVSGEGGSSKPALGESW 410
           ITP+LGG G+HG      LM+S GFLLKKLAHEH+L V+V NHMV GEGG  KPALGESW
Sbjct: 277 ITPILGGSGSHG----RALMISAGFLLKKLAHEHNLAVVVTNHMVGGEGGILKPALGESW 332

Query: 409 KSVSHVRILLSHDQESNLCNVSILKHPCMASGRS 308
           KS+ HVR+LLS D  S++C++SILKH  M    S
Sbjct: 333 KSIPHVRLLLSRDPGSSICHMSILKHSYMVCSLS 366


>ref|XP_004148219.1| PREDICTED: DNA repair protein RAD51 homolog 4-like [Cucumis
           sativus] gi|449518921|ref|XP_004166484.1| PREDICTED: DNA
           repair protein RAD51 homolog 4-like [Cucumis sativus]
          Length = 314

 Score =  185 bits (470), Expect = 8e-45
 Identities = 93/153 (60%), Positives = 115/153 (75%)
 Frame = -2

Query: 745 VKRTMNNIVCHSVFDIFGLLDVLNHLEFTLRSQGKTGDGKLRLLVIDSISSLITPVLGGG 566
           ++R M +I CHSVF+IF L DVL+ LEF LRSQ   GD +++LL+IDSISSLITP+LGG 
Sbjct: 166 LQRVMTSISCHSVFNIFALFDVLHQLEFNLRSQTCKGDRRVQLLIIDSISSLITPILGGS 225

Query: 565 GAHGICPWHCLMVSTGFLLKKLAHEHSLCVLVANHMVSGEGGSSKPALGESWKSVSHVRI 386
            + G    H LM+S G LLKK+AHEH++ VLV NH V G+ G+SKPALGESWKSV HVR+
Sbjct: 226 SSQG----HALMISAGTLLKKIAHEHNIAVLVTNHTVGGDRGTSKPALGESWKSVPHVRL 281

Query: 385 LLSHDQESNLCNVSILKHPCMASGRSAKFSILD 287
            LS D  SN+C  SILKH  MASG +A+F I +
Sbjct: 282 QLSRDAGSNVCQASILKHSSMASGMTARFVIYE 314


>ref|XP_002281461.2| PREDICTED: DNA repair protein RAD51 homolog 4-like [Vitis vinifera]
          Length = 326

 Score =  184 bits (468), Expect = 1e-44
 Identities = 89/137 (64%), Positives = 112/137 (81%)
 Frame = -2

Query: 733 MNNIVCHSVFDIFGLLDVLNHLEFTLRSQGKTGDGKLRLLVIDSISSLITPVLGGGGAHG 554
           M+ I+CHSVFDIF +LDV++ LE++LRSQ +TG  ++RLL++DSISSLITP+LGG G+HG
Sbjct: 170 MSQILCHSVFDIFAMLDVVHQLEYSLRSQVQTGADQVRLLIVDSISSLITPILGGSGSHG 229

Query: 553 ICPWHCLMVSTGFLLKKLAHEHSLCVLVANHMVSGEGGSSKPALGESWKSVSHVRILLSH 374
                 LM+S GFLLKKLAHEH+L V+V NHMV GEGG  KPALGESWKS+ HVR+LLS 
Sbjct: 230 ----RALMISAGFLLKKLAHEHNLAVVVTNHMVGGEGGILKPALGESWKSIPHVRLLLSR 285

Query: 373 DQESNLCNVSILKHPCM 323
           D  S++C++SILKH  M
Sbjct: 286 DPGSSICHMSILKHSYM 302


>emb|CAN80345.1| hypothetical protein VITISV_003133 [Vitis vinifera]
          Length = 1051

 Score =  179 bits (454), Expect = 6e-43
 Identities = 91/178 (51%), Positives = 124/178 (69%), Gaps = 19/178 (10%)
 Frame = -2

Query: 769 FNQATKNGVKRTMNNIVCHSVFDIFGLLDVLNHLEFTLRSQGKTGDGKLRLLVIDSISSL 590
           F +  +N +++ M+ I+CHSVFDIF +LDV++ LE++LRSQ +TG  ++RLL++DSISSL
Sbjct: 165 FKEVKQNILEKVMSQILCHSVFDIFAMLDVVHQLEYSLRSQVQTGADQVRLLIVDSISSL 224

Query: 589 ITPVLGGGGAHGICPWHCLMVSTGFLLKKLAHEHSLCVL-------------------VA 467
           ITP+LGG G+HG      LM+S GFLLKKLAHEH+L V+                   V 
Sbjct: 225 ITPILGGSGSHG----RALMISAGFLLKKLAHEHNLAVVPIIKVSILTIITIMIHWLKVT 280

Query: 466 NHMVSGEGGSSKPALGESWKSVSHVRILLSHDQESNLCNVSILKHPCMASGRSAKFSI 293
           NHMV GEGG  KPALGESWKS+ HVR+LLS D  S++C++SILKH  M+  ++   ++
Sbjct: 281 NHMVGGEGGILKPALGESWKSIPHVRLLLSRDPGSSICHMSILKHSYMSRTKAINHTL 338