BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00016407
         (494 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...   149   3e-34
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub...   125   5e-27
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...   124   8e-27
gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thali...   122   4e-26
gb|AAD24652.1| putative non-LTR retroelement reverse transcripta...   122   4e-26

>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
           predicted protein [Populus trichocarpa]
          Length = 517

 Score =  149 bits (375), Expect = 3e-34
 Identities = 62/162 (38%), Positives = 101/162 (62%), Gaps = 1/162 (0%)
 Frame = -3

Query: 492 DINRILRSFLWTGPDCKQSHALIGWEDVCYPYEEGGLGIRSLEKANQAATMKQIWRLCTK 313
           ++ +I++SFLW+G D + + A + W+ VC P +EGGLGI+S+++ N+ A +K IW LC  
Sbjct: 125 NVEQIMKSFLWSGSDMRTTGAKVAWDQVCLPKKEGGLGIKSIKEWNKIALLKHIWNLCND 184

Query: 312 AD-NLWVFWVQKNLIKGRGFWQLKIPNDCSWSWRNVLKLRKEASGILLHQIGNGRETSFW 136
           +D ++W  W++ NL++GR FW +K P +CSW+W  +LKLR  A   + + IG+G  TS W
Sbjct: 185 SDGSIWSTWIRSNLLRGRNFWTIKTPQNCSWAWGKILKLRSLAWPKMKYIIGDGMTTSLW 244

Query: 135 NEPWHPLGILREKFPATLLYNSRCNMKVNVSNFITDGRWEFP 10
            + WHP   L + +    +Y+S       V+  I +  W+ P
Sbjct: 245 FDNWHPHSPLADSYGERFIYDSGMAKNAKVNVLIQNSEWKTP 286


>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
          Length = 441

 Score =  125 bits (313), Expect = 5e-27
 Identities = 57/130 (43%), Positives = 85/130 (65%), Gaps = 1/130 (0%)
 Frame = -3

Query: 492 DINRILRSFLWTGPDCKQSHALIGWEDVCYPYEEGGLGIRSLEKANQAATMKQIWRLCTK 313
           +I+ +  +FLW+GP+  +  A + W DVC P EEGGLG+RSL +AN+   +K IWRL + 
Sbjct: 58  EIDGLCSAFLWSGPELNRKKAKVSWNDVCMPKEEGGLGLRSLTEANKVCCLKLIWRLLS- 116

Query: 312 ADNLWVFWVQKNLIKGRGFWQLKIPNDC-SWSWRNVLKLRKEASGILLHQIGNGRETSFW 136
           + +LWV W+++ +I+   FW L+  +   SW WR +LK R  ASG   ++I NG+  SFW
Sbjct: 117 SSSLWVQWLRQYVIRKGSFWSLRDTSTLGSWMWRKLLKYRHLASGFTQYEIRNGKGVSFW 176

Query: 135 NEPWHPLGIL 106
           ++ W PLG L
Sbjct: 177 HDNWSPLGPL 186


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  124 bits (311), Expect = 8e-27
 Identities = 56/133 (42%), Positives = 82/133 (61%), Gaps = 2/133 (1%)
 Frame = -3

Query: 492 DINRILRSFLWTGPDCKQSHALIGWEDVCYPYEEGGLGIRSLEKANQAATMKQIWRLCTK 313
           +IN I  +FLW+GP+  +  A + W+D+C P +EGGLG+RSL +AN  + +K IWR+ + 
Sbjct: 243 EINSICSAFLWSGPELHRRKAKVSWDDICKPKQEGGLGLRSLTEANVVSVLKLIWRVTSN 302

Query: 312 ADNLWVFWVQKNLIKGRGFWQLKIPNDC--SWSWRNVLKLRKEASGILLHQIGNGRETSF 139
            D+LWV W + NL+K   FW L  PN    SW W+ +LK R+ A      ++ NG  TSF
Sbjct: 303 DDSLWVKWSKMNLLKQESFWSL-TPNSSLGSWMWKKMLKYRETAKPFSRVEVNNGARTSF 361

Query: 138 WNEPWHPLGILRE 100
           W + W  +G L +
Sbjct: 362 WFDNWSGMGHLMD 374


>gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thaliana]
          Length = 504

 Score =  122 bits (305), Expect = 4e-26
 Identities = 57/132 (43%), Positives = 82/132 (62%), Gaps = 1/132 (0%)
 Frame = -3

Query: 492 DINRILRSFLWTGPDCKQSHALIGWEDVCYPYEEGGLGIRSLEKANQAATMKQIWRLCTK 313
           +I+++  ++LW+G +   S A I W  VC P EEGGLG+RSL++AN    +K IWR+ + 
Sbjct: 168 EIDKMCSAYLWSGGELNTSKAKIAWAFVCKPKEEGGLGLRSLKEANDVCCLKLIWRIISH 227

Query: 312 ADNLWVFWVQKNLIKGRGFWQLKIPNDC-SWSWRNVLKLRKEASGILLHQIGNGRETSFW 136
           AD+LWV W+Q +L+K   FW ++      SW WR +LK R  A  +   +I NG +TSFW
Sbjct: 228 ADSLWVKWIQSSLLKKVFFWAVRENTSLGSWMWRKILKFRDIARTLCKVEINNGAQTSFW 287

Query: 135 NEPWHPLGILRE 100
            + W  LG L E
Sbjct: 288 YDDWSDLGRLIE 299


>gb|AAD24652.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 977

 Score =  122 bits (305), Expect = 4e-26
 Identities = 52/133 (39%), Positives = 82/133 (61%), Gaps = 1/133 (0%)
 Frame = -3

Query: 492  DINRILRSFLWTGPDCKQSHALIGWEDVCYPYEEGGLGIRSLEKANQAATMKQIWRLCTK 313
            DI+++  SFLW+G D     A + W+DVC P +EGGLG+RSL++AN    +K +W++ + 
Sbjct: 795  DIDKLCSSFLWSGQDLNPRKAKVSWDDVCKPKKEGGLGLRSLKEANDVCCLKVVWKIVSH 854

Query: 312  ADNLWVFWVQKNLIKGRGFWQLKIPNDC-SWSWRNVLKLRKEASGILLHQIGNGRETSFW 136
             ++LWV W++K L+K   FW +K      SW WR ++K R++A      ++  G  TSFW
Sbjct: 855  GNSLWVKWIEKFLLKNETFWFVKENTTLGSWMWRKLIKFREKAKNFCKVEVNKGNCTSFW 914

Query: 135  NEPWHPLGILREK 97
             + W  +G + EK
Sbjct: 915  YDDWSNMGQMVEK 927