BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00016403
         (855 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283262.2| PREDICTED: pentatricopeptide repeat-containi...   325   6e-87
ref|XP_004134398.1| PREDICTED: pentatricopeptide repeat-containi...   296   5e-78
ref|XP_003524140.1| PREDICTED: pentatricopeptide repeat-containi...   284   2e-74
ref|XP_003532686.1| PREDICTED: pentatricopeptide repeat-containi...   280   4e-73
ref|XP_002528356.1| pentatricopeptide repeat-containing protein,...   280   4e-73

>ref|XP_002283262.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
           [Vitis vinifera]
          Length = 590

 Score =  325 bits (834), Expect = 6e-87
 Identities = 168/268 (62%), Positives = 200/268 (74%), Gaps = 1/268 (0%)
 Frame = -2

Query: 854 YPKLPNERTLASLFKTCASLSSLPFCLQLHSFSLKLCLSHLPFTGSGLVHFYSKCRLPND 675
           +P LPN+RTLASL KTCASL SL F LQLHS SLKL LS  PF  S LV+FYSKCRLP +
Sbjct: 105 HPTLPNQRTLASLLKTCASLPSLSFGLQLHSLSLKLSLSAQPFVSSALVNFYSKCRLPLE 164

Query: 674 AVKAFHEIPDRDEVSFSAIIVGLAQNSQPTHALSLFADMVSSNVGSTMYSVSGXXXXXXX 495
           A + F EI +RDEV F+A+IVGLAQN++P  AL +F +M + NVGSTMYSVSG       
Sbjct: 165 ACRVFDEITERDEVCFAAMIVGLAQNARPVDALLVFGEMKACNVGSTMYSVSGALRAASE 224

Query: 494 XXXLEQCRIIHAHAFVAGH-TEIVVGTALVDGYGKSGTVSDARRVFDEMLSNMNIIGWNA 318
              LEQCRIIH HA   G  + ++VGTALVDGYGK+G V DARR+FDE+L ++N + WNA
Sbjct: 225 LAALEQCRIIHGHAVSTGFDSNLIVGTALVDGYGKAGLVLDARRIFDELLPSLNEVAWNA 284

Query: 317 IMAAYAQQGDMNSAIELFDGMKLRGFVADELSFLAILTACRNAGLVVEAEKWLICMISDY 138
           +MA YAQQGD  S +ELF+ M+ RG V DE SFLAILT+  NAGLV EAE WL  M  DY
Sbjct: 285 MMAGYAQQGDQRSVVELFNSMEARGLVPDEYSFLAILTSLYNAGLVGEAEGWLTRMKVDY 344

Query: 137 EVEPGLEHYTCVVVALARAGRLRDAERL 54
            +EPGLEHYTC+V  + RAG+L DAER+
Sbjct: 345 GLEPGLEHYTCLVGTMGRAGQLEDAERI 372


>ref|XP_004134398.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
           gi|449487598|ref|XP_004157706.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 583

 Score =  296 bits (757), Expect = 5e-78
 Identities = 152/268 (56%), Positives = 193/268 (72%), Gaps = 1/268 (0%)
 Frame = -2

Query: 854 YPKLPNERTLASLFKTCASLSSLPFCLQLHSFSLKLCLSHLPFTGSGLVHFYSKCRLPND 675
           YP  PNERTLA LFKTCASL  + F   LHS + KL L + P++GS LV+FYSKCRL ND
Sbjct: 101 YPTFPNERTLAPLFKTCASLPCVSFGFALHSLAYKLSLCNGPYSGSALVNFYSKCRLFND 160

Query: 674 AVKAFHEIPDRDEVSFSAIIVGLAQNSQPTHALSLFADMVSSNVGSTMYSVSGXXXXXXX 495
           A K F EI  RDE  +SA++VGLAQN+Q   ALS+F  M +S V ST+YSVSG       
Sbjct: 161 ACKVFDEISYRDEFCYSALVVGLAQNAQSIRALSMFRQMKASEVASTIYSVSGALRAAAD 220

Query: 494 XXXLEQCRIIHAHAFVAG-HTEIVVGTALVDGYGKSGTVSDARRVFDEMLSNMNIIGWNA 318
              LE+CR+IH+HA V G  T ++V TAL+DGYGKSG + DAR+VFDE L  MNI+GWNA
Sbjct: 221 LAALERCRVIHSHAVVTGLDTNVIVQTALIDGYGKSGLIIDARQVFDENLGCMNIVGWNA 280

Query: 317 IMAAYAQQGDMNSAIELFDGMKLRGFVADELSFLAILTACRNAGLVVEAEKWLICMISDY 138
           ++++YAQQGD NS +E+F+ MK  G   DE SFLAIL++  N+GLV E + WL  MI +Y
Sbjct: 281 MLSSYAQQGDQNSTLEVFNSMKPFGMSPDEYSFLAILSSFCNSGLVSEIKPWLRRMIVEY 340

Query: 137 EVEPGLEHYTCVVVALARAGRLRDAERL 54
            V+P LEH+TC++ AL R G+L +AER+
Sbjct: 341 GVKPTLEHFTCLIDALGRTGKLEEAERV 368


>ref|XP_003524140.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Glycine max]
          Length = 561

 Score =  284 bits (727), Expect = 2e-74
 Identities = 146/265 (55%), Positives = 187/265 (70%), Gaps = 1/265 (0%)
 Frame = -2

Query: 845 LPNERTLASLFKTCASLSSLPFCLQLHSFSLKLCLSHLPFTGSGLVHFYSKCRLPNDAVK 666
           LPN RTLASLF TCA+L+++ F L LHS +LKL L+H PF  S L+  Y+K R+P++A K
Sbjct: 95  LPNHRTLASLFATCAALTAVSFALSLHSLALKLALAHHPFPASSLLSVYAKLRMPHNARK 154

Query: 665 AFHEIPDRDEVSFSAIIVGLAQNSQPTHALSLFADMVSSNVGSTMYSVSGXXXXXXXXXX 486
            F EIP  D V FSA++V LAQNS+   ALS+F+DM      ST++ VSG          
Sbjct: 155 VFDEIPQPDNVCFSALVVALAQNSRSVDALSVFSDMRCRGFASTVHGVSGGLRAAAQLAA 214

Query: 485 LEQCRIIHAHAFVAG-HTEIVVGTALVDGYGKSGTVSDARRVFDEMLSNMNIIGWNAIMA 309
           LEQCR++HAHA +AG  + +VVG+A+VDGYGK+G V DARRVF++ L +MNI GWNA+MA
Sbjct: 215 LEQCRMMHAHAIIAGLDSNVVVGSAVVDGYGKAGVVDDARRVFEDSLDDMNIAGWNAMMA 274

Query: 308 AYAQQGDMNSAIELFDGMKLRGFVADELSFLAILTACRNAGLVVEAEKWLICMISDYEVE 129
            YAQ GD  SA ELF+ ++  G V DE +FLAILTA  NAG+ +E  +W   M  DY +E
Sbjct: 275 GYAQHGDYQSAFELFESLEGFGLVPDEYTFLAILTALCNAGMFLEIYRWFTRMRVDYGLE 334

Query: 128 PGLEHYTCVVVALARAGRLRDAERL 54
           P LEHYTC+V A+ARAG L  AER+
Sbjct: 335 PSLEHYTCLVGAMARAGELERAERV 359


>ref|XP_003532686.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Glycine max]
          Length = 561

 Score =  280 bits (715), Expect = 4e-73
 Identities = 146/265 (55%), Positives = 186/265 (70%), Gaps = 1/265 (0%)
 Frame = -2

Query: 845 LPNERTLASLFKTCASLSSLPFCLQLHSFSLKLCLSHLPFTGSGLVHFYSKCRLPNDAVK 666
           LPN RT+ASLF TCA+L+++ F L LHS +LKL LS  PF  S L+  Y+K R+P +A K
Sbjct: 95  LPNHRTVASLFTTCAALTAVSFALSLHSLALKLSLSQHPFPASSLLSLYAKLRMPLNARK 154

Query: 665 AFHEIPDRDEVSFSAIIVGLAQNSQPTHALSLFADMVSSNVGSTMYSVSGXXXXXXXXXX 486
            F EIP  D V FSA+IV LAQNS+   A S+F++M      ST++SVSG          
Sbjct: 155 VFDEIPQPDNVCFSALIVALAQNSRSVDASSVFSEMRGRGFASTVHSVSGVLRAAAQLAA 214

Query: 485 LEQCRIIHAHAFVAG-HTEIVVGTALVDGYGKSGTVSDARRVFDEMLSNMNIIGWNAIMA 309
           LEQCR++HAHA V G  + +VVG+ALVDGYGK+G V+DARRVF++ L +MN++GWNA+MA
Sbjct: 215 LEQCRMMHAHAVVLGLDSNVVVGSALVDGYGKAGVVNDARRVFEDNLDDMNVVGWNAMMA 274

Query: 308 AYAQQGDMNSAIELFDGMKLRGFVADELSFLAILTACRNAGLVVEAEKWLICMISDYEVE 129
            YAQQGD  SA ELF+ ++  G V DE +FLAILTA  NAG+ +E   W   M  DY +E
Sbjct: 275 GYAQQGDYQSAFELFESLEGCGLVPDEYTFLAILTALCNAGMFLEIAPWFTRMRVDYGLE 334

Query: 128 PGLEHYTCVVVALARAGRLRDAERL 54
           P LEHYTC+V A+ARAG L  AER+
Sbjct: 335 PSLEHYTCLVGAMARAGELERAERV 359


>ref|XP_002528356.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532224|gb|EEF34028.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 356

 Score =  280 bits (715), Expect = 4e-73
 Identities = 141/244 (57%), Positives = 178/244 (72%), Gaps = 1/244 (0%)
 Frame = -2

Query: 851 PKLPNERTLASLFKTCASLSSLPFCLQLHSFSLKLCLSHLPFTGSGLVHFYSKCRLPNDA 672
           P LPN+RTLASLFK C +LS+L F   LHS +LKL L   PF+GS LV+FYSKCRLP +A
Sbjct: 87  PILPNQRTLASLFKACTNLSALSFGFSLHSMALKLSLDTQPFSGSALVNFYSKCRLPENA 146

Query: 671 VKAFHEIPDRDEVSFSAIIVGLAQNSQPTHALSLFADMVSSNVGSTMYSVSGXXXXXXXX 492
            K F E+P+RDEV + A+IVGLAQNS+   ALS+F +M   NV ST+YSVSG        
Sbjct: 147 RKVFDEMPERDEVCYGALIVGLAQNSRAIDALSVFNEMKFCNVSSTVYSVSGALRAAAAM 206

Query: 491 XXLEQCRIIHAHAFVAG-HTEIVVGTALVDGYGKSGTVSDARRVFDEMLSNMNIIGWNAI 315
             LEQCR+IH HA V+G    +++G++L+DGYGK+G + DAR VFDE+L  +N++ WNA+
Sbjct: 207 AALEQCRVIHGHAVVSGLDRNVIIGSSLIDGYGKAGVIMDARMVFDELLPGLNMVAWNAM 266

Query: 314 MAAYAQQGDMNSAIELFDGMKLRGFVADELSFLAILTACRNAGLVVEAEKWLICMISDYE 135
           MA YAQQGD NS +ELF+ M+  G + DE SFLAILTA  NAGL +E+EKWL  M  +Y 
Sbjct: 267 MAVYAQQGDKNSVLELFNAMRGEGLLPDEYSFLAILTAFCNAGLYLESEKWLKSMKVEYG 326

Query: 134 VEPG 123
           VEPG
Sbjct: 327 VEPG 330