BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00016399
         (2389 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_006732333.1| capsid protein [Dahlia mosaic virus] gi|3132...   240   1e-60
ref|NP_619547.1| Coat protein [Figwort mosaic virus] gi|116746|s...   221   5e-55
gb|AFI61741.1| capsid protein [Cauliflower mosaic virus]              218   8e-54
ref|NP_056727.1| capsid protein [Cauliflower mosaic virus] gi|11...   215   4e-53
emb|CAA55973.1| unnamed protein product [Cauliflower mosaic virus]    214   8e-53

>ref|YP_006732333.1| capsid protein [Dahlia mosaic virus] gi|31323288|gb|AAP44110.1|
            putative capsid protein [Dahlia mosaic virus]
            gi|404435873|gb|AFR69282.1| capsid protein [Dahlia mosaic
            virus]
          Length = 491

 Score =  240 bits (612), Expect = 1e-60
 Identities = 142/482 (29%), Positives = 236/482 (48%), Gaps = 37/482 (7%)
 Frame = -3

Query: 1553 ISDHLETVFFN-----SNPDEDLTELIKLMALQEKELEKRFRENPELYGKYNIPQNIMKI 1389
            IS+ LE VF +     ++ D+DL+E+++L++L   E E+ F +NP LY KY   +    +
Sbjct: 8    ISERLEEVFHDLYCTENDRDKDLSEIVQLLSLDTDECERHFTQNPYLYKKYFTQE----V 63

Query: 1388 RGXXXXXXXXXXXXDIAIPQQVRATVKNEYGETS-------------------------- 1287
                          +  I +    +VK +  ++S                          
Sbjct: 64   EDELVLQIEEKARTESEISEPETESVKTQDPDSSDEENVHPVRFRNDNWNISDDDQPRVK 123

Query: 1286 -----SSYRPPKNRFDFSQESPRDSKENRNINILNIDCIYDLIEKRRLIDKWDTEINLIM 1122
                 S++   K +F    E P +S  ++ IN +NIDCI DL  +++++DKW TEI+L +
Sbjct: 124  TERYESTFYETKPKFPRHFEIPSNSGTSKEINTINIDCIPDLDFRKKILDKWLTEISLTI 183

Query: 1121 QTDRENYVRTEPVLLLMEHKTEGIVKKLIKTTAWNRDLHGNDTFETVMAALYTMFLGINY 942
            QT+ + +     VL L+EHK+ G +K  IK   W+ +  G    +     LYTMFLG++Y
Sbjct: 184  QTNSKEFTTARAVLTLLEHKSGGNIKTFIKKALWDENQTGPQVLDEATKGLYTMFLGLDY 243

Query: 941  TENMAREAEKEMADARARILKMQLCDICMLPSFSCEYEKLMYILPPQEYKQKVEQFIQKL 762
              N   + +K    A   + K QLCDIC L  F+C +EK + ++  ++Y   ++ +++K+
Sbjct: 244  VSNALEQEQKLRQKAVDAMTKAQLCDICRLDEFTCLFEKNINLVDLKDYPIWIDVYLRKI 303

Query: 761  PIISDDVHRKWLLLSDL-EQHSLGSAQRLIQAEIKVYCEFVNKSKYLRQIGKTCCDKIDY 585
            PII      +W   + +  +HS+  A R+++ EI  YC+F   SK L+  G+ CC++   
Sbjct: 304  PIIGQQARNRWEKEATIPSKHSIAFATRIVKDEIAKYCDFRKTSKQLKSFGQRCCNQY-- 361

Query: 584  TKDLTYGCYXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRQFKPGTYFRKKPKTNKPLDXX 405
             K+  Y                                R+F+PG +F+KKPK ++     
Sbjct: 362  -KEPNYNIGCKEPTCKPTYKKKKYTRPKPKYKKWVKKKRKFQPGKFFKKKPKGDEK-PKR 419

Query: 404  XXXXXXXXXXXCWICNEEGHYPNECPNRTNQPDKVRMLEEALIEGYIPIEDPYSESKNVY 225
                       CWIC+EEGHY NECP+R + P+KV +L+EA    + P+ED Y +  N+Y
Sbjct: 420  NFCPQGKKKCRCWICSEEGHYANECPSRKSYPEKVSLLQEAHDHNFYPVEDEYDDYLNIY 479

Query: 224  II 219
            ++
Sbjct: 480  VV 481


>ref|NP_619547.1| Coat protein [Figwort mosaic virus] gi|116746|sp|P09519.1|CAPSD_FMVD
            RecName: Full=Probable capsid protein; Short=CP; AltName:
            Full=Coat protein gi|58812|emb|CAA29526.1| unnamed
            protein product [Figwort mosaic virus]
          Length = 489

 Score =  221 bits (564), Expect = 5e-55
 Identities = 129/372 (34%), Positives = 193/372 (51%), Gaps = 3/372 (0%)
 Frame = -3

Query: 1331 QQVRATVKNEYGETSSSYRPPKNRFDFSQESPRDSKENRNINILNIDCIYDLIEKRRLID 1152
            Q + AT K +  E +  Y PP ++       P  +     I+ LN+DCI    E++ +ID
Sbjct: 101  QDLGATRKRKIEERNPFYTPPVHK-----GIPSSTGRGTEISTLNLDCISSFEERKVMID 155

Query: 1151 KWDTEINLIMQTDRENYVRTEPVLLLMEHKTEGIVKKLIKTTAWNRDLHGNDTFETVMAA 972
            KW  EI+LI+QT++E++  +  VL LMEH+TEGI K  IK   W+  +      E V+  
Sbjct: 156  KWFNEISLIIQTNKESFDTSLKVLTLMEHRTEGIAKSFIKQATWDILITPEKIIEEVLTG 215

Query: 971  LYTMFLGINYTENMAREAEKEMADARARILKMQLCDICMLPSFSCEYEKLMYILPPQEYK 792
             YTMF+G++Y  +  +E EK +  A   ++K QLC+IC L +F+C YEK +  L  +++ 
Sbjct: 216  FYTMFIGLDYALSAEKEEEKRIKKAEELLIKSQLCNICELDNFTCFYEKQINQLKFEDFP 275

Query: 791  QKVEQFIQKLPIISDDVHRKW-LLLSDLEQHSLGSAQRLIQAEIKVYCEFVNKSKYLRQI 615
            + +E ++ K+PII      +W    S   ++SL  A+R+IQ EI  YC+F   SK L+  
Sbjct: 276  KWIELYLGKIPIIGKQSKERWDNEKSFTTKYSLAFAKRIIQEEIAKYCDFQRTSKKLKNF 335

Query: 614  GKTCCDKIDYTKDLTYGCY-XXXXXXXXXXXXXXXXXXXXXXXXXXXXPRQFKPGTYF-R 441
             K CC K      +++GC                               R+F PG YF +
Sbjct: 336  SKKCCSKNSLDPLVSFGCRDTKKKDFKKSSKYKAYKKKKTLKKLWKKKKRKFTPGKYFSK 395

Query: 440  KKPKTNKPLDXXXXXXXXXXXXXCWICNEEGHYPNECPNRTNQPDKVRMLEEALIEGYIP 261
            KKP+   P               CWIC EEGHY NECPNR +  +KV++L   + EGY P
Sbjct: 396  KKPEKFCP--------QGRKKCRCWICTEEGHYANECPNRKSHQEKVKILIHGMNEGYYP 447

Query: 260  IEDPYSESKNVY 225
            +ED Y+ +  V+
Sbjct: 448  LEDAYTGNLEVF 459


>gb|AFI61741.1| capsid protein [Cauliflower mosaic virus]
          Length = 487

 Score =  218 bits (554), Expect = 8e-54
 Identities = 130/370 (35%), Positives = 193/370 (52%), Gaps = 6/370 (1%)
 Frame = -3

Query: 1310 KNEYGETSSSY-----RPPKNRFDFSQESPRDSKENRNINILNIDCIYDLIEKRRLIDKW 1146
            K E GE  S Y     + P++R+  +Q      ++  +I +LNIDC      +R LID W
Sbjct: 108  KEEDGEGPSRYNERKRKTPEDRYFPTQPKTIPGQKQTSIGMLNIDC---QANRRTLIDDW 164

Query: 1145 DTEINLIMQTDRENYVRTEPVLLLMEHKTEGIVKKLIKTTAWNRDLHGNDTFETVMAALY 966
              EI LI++T+RE+Y+  E +LLLMEHKT GI K+LI+ T WNR     D  E V+ A+Y
Sbjct: 165  AAEIGLIVKTNREDYLDPETILLLMEHKTSGIAKELIRNTRWNRTT--GDIIEQVIDAMY 222

Query: 965  TMFLGINYTENMAREAEKEMADARARILKMQLCDICMLPSFSCEYEKLMYILPPQEYKQK 786
            TMFLG+NY++N   E  +E   A+ R+ K+QLCDIC L  F+C+YEK MY     ++   
Sbjct: 223  TMFLGLNYSDNKVAEKIEEQEKAKIRMTKLQLCDICYLEEFTCDYEKNMYKTELADFPGY 282

Query: 785  VEQFIQKLPIISDDVHRKWL-LLSDLEQHSLGSAQRLIQAEIKVYCEFVNKSKYLRQIGK 609
            + Q++ K+PII +    ++    +    +SLG A ++++ E+   C+   K K L++  K
Sbjct: 283  INQYLSKIPIIGEKALTRFRHEANGTSIYSLGFAAKIVKEELSKICDLTKKQKKLKKFNK 342

Query: 608  TCCDKIDYTKDLTYGCYXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRQFKPGTYFRKKPK 429
             CC   +    + YGC                              ++F+ G YF+ K K
Sbjct: 343  KCCSIGE--ASVEYGC-----KKTSKKKYHKRYKKKYKVYKPYKKKKKFRSGKYFKPKEK 395

Query: 428  TNKPLDXXXXXXXXXXXXXCWICNEEGHYPNECPNRTNQPDKVRMLEEALIEGYIPIEDP 249
                               CWICN EGHY NECPNR +  +K  +L++A   G  PIE+P
Sbjct: 396  KG---SKQKYCPKGKKDCRCWICNIEGHYANECPNRQSS-EKAHILQQAENLGLQPIEEP 451

Query: 248  YSESKNVYII 219
            Y   + V+I+
Sbjct: 452  YEGVQEVFIL 461


>ref|NP_056727.1| capsid protein [Cauliflower mosaic virus]
            gi|116719|sp|P03542.1|CAPSD_CAMVS RecName: Full=Capsid
            protein; Short=CP; AltName: Full=Coat protein
            gi|58825|emb|CAA23459.1| unnamed protein product
            [Cauliflower mosaic virus]
          Length = 489

 Score =  215 bits (548), Expect = 4e-53
 Identities = 129/370 (34%), Positives = 193/370 (52%), Gaps = 6/370 (1%)
 Frame = -3

Query: 1310 KNEYGETSSSY-----RPPKNRFDFSQESPRDSKENRNINILNIDCIYDLIEKRRLIDKW 1146
            K E GE  S Y     + P++R+  +Q      ++  ++ +LNIDC      +R LID W
Sbjct: 109  KEEDGEGPSRYNERKRKTPEDRYFPTQPKTIPGQKQTSMGMLNIDC---QTNRRTLIDDW 165

Query: 1145 DTEINLIMQTDRENYVRTEPVLLLMEHKTEGIVKKLIKTTAWNRDLHGNDTFETVMAALY 966
              EI LI++T+RE+Y+  E +LLLMEHKT GI K+LI+ T WNR     D  E V+ A+Y
Sbjct: 166  AAEIGLIVKTNREDYLDPETILLLMEHKTSGIAKELIRNTRWNRTT--GDIIEQVIDAMY 223

Query: 965  TMFLGINYTENMAREAEKEMADARARILKMQLCDICMLPSFSCEYEKLMYILPPQEYKQK 786
            TMFLG+NY++N   E   E   A+ R+ K+QLCDIC L  F+C+YEK MY     ++   
Sbjct: 224  TMFLGLNYSDNKVAEKIDEQEKAKIRMTKLQLCDICYLEEFTCDYEKNMYKTELADFPGY 283

Query: 785  VEQFIQKLPIISDDVHRKWL-LLSDLEQHSLGSAQRLIQAEIKVYCEFVNKSKYLRQIGK 609
            + Q++ K+PII +    ++    +    +SLG A ++++ E+   C+   K K L++  K
Sbjct: 284  INQYLSKIPIIGEKALTRFRHEANGTSIYSLGFAAKIVKEELSKICDLSKKQKKLKKFNK 343

Query: 608  TCCDKIDYTKDLTYGCYXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRQFKPGTYFRKKPK 429
             CC   + + +  YGC                              ++F+ G YF+ K K
Sbjct: 344  KCCSIGEASTE--YGC----KKTSTKKYHKKRYKKKYKAYKPYKKKKKFRSGKYFKPKEK 397

Query: 428  TNKPLDXXXXXXXXXXXXXCWICNEEGHYPNECPNRTNQPDKVRMLEEALIEGYIPIEDP 249
                               CWICN EGHY NECPNR +  +K  +L++A   G  PIE+P
Sbjct: 398  KG---SKQKYCPKGKKDCRCWICNIEGHYANECPNRQSS-EKAHILQQAEKLGLQPIEEP 453

Query: 248  YSESKNVYII 219
            Y   + V+I+
Sbjct: 454  YEGVQEVFIL 463


>emb|CAA55973.1| unnamed protein product [Cauliflower mosaic virus]
          Length = 489

 Score =  214 bits (545), Expect = 8e-53
 Identities = 130/370 (35%), Positives = 192/370 (51%), Gaps = 6/370 (1%)
 Frame = -3

Query: 1310 KNEYGETSSSY-----RPPKNRFDFSQESPRDSKENRNINILNIDCIYDLIEKRRLIDKW 1146
            K E GE  S Y     + P++R+  +Q      ++  ++ +LNIDC      +R LID W
Sbjct: 109  KEEDGEGPSRYNERKRKTPEDRYFPTQPKTIPGQKQTSMGMLNIDC---QTNRRTLIDDW 165

Query: 1145 DTEINLIMQTDRENYVRTEPVLLLMEHKTEGIVKKLIKTTAWNRDLHGNDTFETVMAALY 966
              EI LI++T+RE+Y+  E +LLLMEHKT GI K+LI+ T WNR     D  E V+ A+Y
Sbjct: 166  AAEIGLIVKTNREDYLDPETILLLMEHKTSGIAKELIRNTRWNRTT--GDIIEQVIDAMY 223

Query: 965  TMFLGINYTENMAREAEKEMADARARILKMQLCDICMLPSFSCEYEKLMYILPPQEYKQK 786
            TMFLG+NY++N   E   E   A+ R+ K+QLCDIC L  F+C+YEK MY     ++   
Sbjct: 224  TMFLGLNYSDNKVAEKIDEQEKAKIRMTKLQLCDICYLEEFTCDYEKNMYKTELTDFPGY 283

Query: 785  VEQFIQKLPIISDD-VHRKWLLLSDLEQHSLGSAQRLIQAEIKVYCEFVNKSKYLRQIGK 609
            + Q++ K+PII +  + R     +    +SLG A ++++ E+   C+   K K L++  K
Sbjct: 284  INQYLSKIPIIGEKRLTRFRHEANGTSIYSLGFAAKIVKEELSKICDLSKKQKKLKKFNK 343

Query: 608  TCCDKIDYTKDLTYGCYXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRQFKPGTYFRKKPK 429
             CC   +    + YGC                              ++F+ G YF+ K K
Sbjct: 344  KCCSIGE--ASVEYGC-----KKTSKKKYHKRYKKKYKVYKPYKKKKKFRSGKYFKPKEK 396

Query: 428  TNKPLDXXXXXXXXXXXXXCWICNEEGHYPNECPNRTNQPDKVRMLEEALIEGYIPIEDP 249
                               CWICN EGHY NECPNR +  +K  +L++A   G  PIE+P
Sbjct: 397  KG---SKQKYCPKGKKDCRCWICNIEGHYANECPNRQSS-EKAHVLQQAEKLGLQPIEEP 452

Query: 248  YSESKNVYII 219
            Y   + V+I+
Sbjct: 453  YEGVQEVFIL 462