BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00016317
         (377 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [...   181   7e-44
ref|XP_004149458.1| PREDICTED: RNA polymerase sigma factor sigE,...   180   1e-43
ref|XP_004166500.1| PREDICTED: RNA polymerase sigma factor sigE,...   179   3e-43
ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD ...   174   9e-42
ref|XP_003541542.1| PREDICTED: RNA polymerase sigma factor rpoD-...   171   6e-41

>ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223547495|gb|EEF48990.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 501

 Score =  181 bits (458), Expect = 7e-44
 Identities = 90/121 (74%), Positives = 104/121 (85%)
 Frame = +1

Query: 13  KRKMNDTADVGYADRLVREYSASTDLVSLDWRKMKIPPVLPSSEHTLLFKLMQPMKTLLK 192
           ++K +   D    + LVR YSAST+LVSLDWRKMKIPPVLPS+EH  LFKLMQPMKTLL 
Sbjct: 167 RKKKDSKDDNEKIEELVRTYSASTNLVSLDWRKMKIPPVLPSTEHAWLFKLMQPMKTLLP 226

Query: 193 VKEDLHKDLGREPSDGELAAATNMSVPKVRKQIEVGRAARNKLIKHNLRLVLFVINKYFQ 372
           VK DL K+LGR+P+DGELA ATNM+V KVRKQ+EVGRAARNKLIKHNLRLV+FV+NKYFQ
Sbjct: 227 VKADLQKNLGRDPTDGELAEATNMNVEKVRKQLEVGRAARNKLIKHNLRLVMFVMNKYFQ 286

Query: 373 E 375
           +
Sbjct: 287 D 287


>ref|XP_004149458.1| PREDICTED: RNA polymerase sigma factor sigE,
           chloroplastic/mitochondrial-like [Cucumis sativus]
          Length = 514

 Score =  180 bits (456), Expect = 1e-43
 Identities = 89/116 (76%), Positives = 104/116 (89%)
 Frame = +1

Query: 28  DTADVGYADRLVREYSASTDLVSLDWRKMKIPPVLPSSEHTLLFKLMQPMKTLLKVKEDL 207
           D  D    DRLVR+YSASTDLVSLDW+KMKIPPVLPSSEHT LFKL+QPMK L++V+E+L
Sbjct: 183 DEIDDDEIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEEL 242

Query: 208 HKDLGREPSDGELAAATNMSVPKVRKQIEVGRAARNKLIKHNLRLVLFVINKYFQE 375
            K LGREP++GELA ATNM+V +VR+Q+EVGRAARNKLIKHNLRLVLFVINKYF++
Sbjct: 243 QKGLGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFED 298


>ref|XP_004166500.1| PREDICTED: RNA polymerase sigma factor sigE,
           chloroplastic/mitochondrial-like [Cucumis sativus]
          Length = 515

 Score =  179 bits (453), Expect = 3e-43
 Identities = 87/108 (80%), Positives = 102/108 (94%)
 Frame = +1

Query: 52  DRLVREYSASTDLVSLDWRKMKIPPVLPSSEHTLLFKLMQPMKTLLKVKEDLHKDLGREP 231
           DRLVR+YSASTDLVSLDW+KMKIPPVLPSSEHT LFKL+QPMK L++V+E+L K LGREP
Sbjct: 192 DRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREP 251

Query: 232 SDGELAAATNMSVPKVRKQIEVGRAARNKLIKHNLRLVLFVINKYFQE 375
           ++GELA ATNM+V +VR+Q+EVGRAARNKLIKHNLRLVLFVINKYF++
Sbjct: 252 TEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFED 299


>ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
           gi|302143685|emb|CBI22546.3| unnamed protein product
           [Vitis vinifera]
          Length = 518

 Score =  174 bits (440), Expect = 9e-42
 Identities = 87/108 (80%), Positives = 97/108 (89%)
 Frame = +1

Query: 52  DRLVREYSASTDLVSLDWRKMKIPPVLPSSEHTLLFKLMQPMKTLLKVKEDLHKDLGREP 231
           D LVREYSASTDLVSLDW+KMKIPPVLP SEH  LFKLMQPMK LL+VK++L KDLGREP
Sbjct: 195 DVLVREYSASTDLVSLDWKKMKIPPVLPPSEHAWLFKLMQPMKGLLEVKDNLQKDLGREP 254

Query: 232 SDGELAAATNMSVPKVRKQIEVGRAARNKLIKHNLRLVLFVINKYFQE 375
           +DGELA A +MS  +VR+ +EVG+AARNKLIKHNLRLVLFVINKYFQE
Sbjct: 255 TDGELAEAMSMSAVQVRRHMEVGQAARNKLIKHNLRLVLFVINKYFQE 302


>ref|XP_003541542.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
          Length = 512

 Score =  171 bits (433), Expect = 6e-41
 Identities = 89/125 (71%), Positives = 104/125 (83%)
 Frame = +1

Query: 1   VDLTKRKMNDTADVGYADRLVREYSASTDLVSLDWRKMKIPPVLPSSEHTLLFKLMQPMK 180
           +D T++K N    V   D L+R+YSASTDLVS+DW+KMKIPPVLPSSEH  LFKLMQPMK
Sbjct: 173 IDQTQKKRNVKNRVQNIDVLIRDYSASTDLVSMDWKKMKIPPVLPSSEHAWLFKLMQPMK 232

Query: 181 TLLKVKEDLHKDLGREPSDGELAAATNMSVPKVRKQIEVGRAARNKLIKHNLRLVLFVIN 360
            LL+ KEDL K++ +E + GELA ATNMS+ +VRK IEVGRAARNKLIKHNLRLVLFVIN
Sbjct: 233 ALLQAKEDL-KEVDKEITGGELADATNMSIIQVRKAIEVGRAARNKLIKHNLRLVLFVIN 291

Query: 361 KYFQE 375
           KYFQ+
Sbjct: 292 KYFQD 296