BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00016219
         (1641 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chlor...   744   0.0  
ref|XP_002304926.1| predicted protein [Populus trichocarpa] gi|2...   700   0.0  
ref|XP_003541622.1| PREDICTED: RNA pseudourine synthase 6, chlor...   694   0.0  
ref|XP_002518515.1| ribosomal pseudouridine synthase, putative [...   691   0.0  
ref|XP_003547248.1| PREDICTED: RNA pseudourine synthase 6, chlor...   678   0.0  

>ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic [Vitis vinifera]
            gi|302144082|emb|CBI23187.3| unnamed protein product
            [Vitis vinifera]
          Length = 472

 Score =  744 bits (1920), Expect = 0.0
 Identities = 352/476 (73%), Positives = 411/476 (86%)
 Frame = -1

Query: 1641 GVVSFTSIFTNTFISSLCTSNCKTLSLPITLLRTLATSHFLTKQNKNLGNFSWGSSNRTF 1462
            G    TSIFT+  +SSL  SNC++   P+ L RTLA+S+  ++++K +    W S+N T 
Sbjct: 2    GTAILTSIFTSGLVSSLWNSNCRSFGTPVALARTLASSNVFSRRHKRV---VWCSNNPTC 58

Query: 1461 TRHASSKAEIGVTISSSTHDGYPEYGRLLPCPLENGPPRIEHLVVSEGGPVLDFICKSLD 1282
            TR  ++ ++   + ++S+ +GYPEY RLLPCP +NGPPR+EHLVVSEGG VLD+I K+LD
Sbjct: 59   TRELTASSD---SANTSSVNGYPEYHRLLPCPSQNGPPRVEHLVVSEGGCVLDYISKALD 115

Query: 1281 LPPLFVADLIHFGAVYYALVCPKPPPSATPEQIRLFKEVTSPSILKKRLSVKGKTVREAQ 1102
            LPPLFVADLIHFGAVYYALVCP+PPPSATPEQ+RLFKEVT+PS+L+KR S+KGKT+REAQ
Sbjct: 116  LPPLFVADLIHFGAVYYALVCPEPPPSATPEQVRLFKEVTAPSVLRKRPSIKGKTIREAQ 175

Query: 1101 KTFRITHVHEFVEAGTYIRVHVHPKRFPRSYEIDWKSRIIAVAESYVVLDKPAGTSVGGT 922
            KTFRIT V+EFVEAGTY+RVHVHPKRFPR YEIDWKSRIIAV ESYVVLDKPAGTSVGGT
Sbjct: 176  KTFRITDVNEFVEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGT 235

Query: 921  TDNIEESCATFATRALGLAIPLKTTHQIDNCTAGCVVLARTKEYCSVFHGKIREKRVKKL 742
            TDNIEESCATFATRALGL  PL+TTHQIDNCT GCVVLARTKEYCSVFHGKIREK+VKKL
Sbjct: 236  TDNIEESCATFATRALGLTTPLRTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKL 295

Query: 741  YRALAAAPVPLGTITHYMRPVNIAPRLVSKDFHRGWNLCQLDVLECKEVPWPNVFIQEKY 562
            YRALAAAP+P+G +THYMRPVNIAPRL+S+DF +GW LCQL+VLECKEVPWP+  I+EKY
Sbjct: 296  YRALAAAPMPIGIVTHYMRPVNIAPRLISEDFIKGWYLCQLEVLECKEVPWPSTLIEEKY 355

Query: 561  CVDDCGWPSKDVAYECKINLLTGRTHQIRAQFAAYGAPIVGDSMYMPAVIAERSSPGLNP 382
            C++D GWP K+ A++CKINLLTGRTHQIRAQ AA GAPIVGDSMYMPA IAE +SPGLNP
Sbjct: 356  CIEDRGWPLKNSAFKCKINLLTGRTHQIRAQLAACGAPIVGDSMYMPAAIAEITSPGLNP 415

Query: 381  FGEHGKLYPTEEDKANAVEEWMARHGKEPSVAIGLQAFQISWDEGEHFYECGPPWW 214
            FG++ K Y TE D+  AV EW+A+HGKEP VAIGLQA QISWD+GEHFY+ G PWW
Sbjct: 416  FGKYKKKYTTENDRETAVAEWIAQHGKEPGVAIGLQACQISWDDGEHFYKAGSPWW 471


>ref|XP_002304926.1| predicted protein [Populus trichocarpa] gi|222847890|gb|EEE85437.1|
            predicted protein [Populus trichocarpa]
          Length = 470

 Score =  700 bits (1807), Expect = 0.0
 Identities = 332/464 (71%), Positives = 390/464 (84%)
 Frame = -1

Query: 1602 ISSLCTSNCKTLSLPITLLRTLATSHFLTKQNKNLGNFSWGSSNRTFTRHASSKAEIGVT 1423
            ++S+ + + ++ S P+TLLRTLA +   +   K L    W S ++      S K +I  T
Sbjct: 6    LASIFSYSYRSFSAPVTLLRTLAFTRAYSLNKKAL---VWCSLSKKKLSCESLKQDIACT 62

Query: 1422 ISSSTHDGYPEYGRLLPCPLENGPPRIEHLVVSEGGPVLDFICKSLDLPPLFVADLIHFG 1243
             ++S+ +GYPEY RLLPCP  N PPRIEHLVVSE GPVLD+ICK+LDLPPLFVADLIHFG
Sbjct: 63   TATSSVNGYPEYTRLLPCPSHNSPPRIEHLVVSEEGPVLDYICKALDLPPLFVADLIHFG 122

Query: 1242 AVYYALVCPKPPPSATPEQIRLFKEVTSPSILKKRLSVKGKTVREAQKTFRITHVHEFVE 1063
            AV+YALVCP+PP +ATPEQIR+F+EVT+PS+LKKR S+KGKTVREAQKTFRITHV +F+E
Sbjct: 123  AVHYALVCPQPPRTATPEQIRVFEEVTAPSVLKKRASIKGKTVREAQKTFRITHVDQFLE 182

Query: 1062 AGTYIRVHVHPKRFPRSYEIDWKSRIIAVAESYVVLDKPAGTSVGGTTDNIEESCATFAT 883
            AG Y+RVHVHPKRFPR Y+IDWKSRII V ES+VVLDKPAGTSVGGTTDNIEESCATFAT
Sbjct: 183  AGMYLRVHVHPKRFPRCYDIDWKSRIIHVTESFVVLDKPAGTSVGGTTDNIEESCATFAT 242

Query: 882  RALGLAIPLKTTHQIDNCTAGCVVLARTKEYCSVFHGKIREKRVKKLYRALAAAPVPLGT 703
            RALGL  PL+TTHQIDNCT GCVVLART+E CSVFHGKIREK VKKLY ALAA+PVP+G 
Sbjct: 243  RALGLTAPLRTTHQIDNCTEGCVVLARTREDCSVFHGKIREKTVKKLYIALAASPVPIGV 302

Query: 702  ITHYMRPVNIAPRLVSKDFHRGWNLCQLDVLECKEVPWPNVFIQEKYCVDDCGWPSKDVA 523
            + HYMRP+N+APRLVS++F +GW+LCQL+V+ECK VPWP+  ++EKYCV DCGWPSKD A
Sbjct: 303  VNHYMRPINMAPRLVSEEFIKGWHLCQLEVMECKRVPWPDAVMEEKYCVQDCGWPSKDHA 362

Query: 522  YECKINLLTGRTHQIRAQFAAYGAPIVGDSMYMPAVIAERSSPGLNPFGEHGKLYPTEED 343
            YECKINLLTGRTHQIRAQ AA GAP+VGDSMYMPA +AE  SPG NPFG++ K Y +E+D
Sbjct: 363  YECKINLLTGRTHQIRAQLAALGAPLVGDSMYMPAAVAEMVSPGCNPFGKYKKQYTSEDD 422

Query: 342  KANAVEEWMARHGKEPSVAIGLQAFQISWDEGEHFYECGPPWWR 211
            KA AVEEW+  HGKEP+VAIGLQA QISWD+G+H Y  G PWWR
Sbjct: 423  KAIAVEEWVLCHGKEPNVAIGLQACQISWDDGKHIYNAGSPWWR 466


>ref|XP_003541622.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Glycine
            max]
          Length = 473

 Score =  694 bits (1792), Expect = 0.0
 Identities = 329/475 (69%), Positives = 391/475 (82%), Gaps = 9/475 (1%)
 Frame = -1

Query: 1608 TFISSLCTSNCKTLSLP-----ITLLRTLATSHFLTKQNKNLGNFSWGSSNRTFTRHAS- 1447
            T  S L    C+ L++P     I + R   +SH     NK+  ++   SS+ + T  A  
Sbjct: 2    TVASMLFAGGCRILAVPAAARAIRIPRAALSSH----HNKHAPSWGCRSSHNSNTALAGE 57

Query: 1446 ---SKAEIGVTISSSTHDGYPEYGRLLPCPLENGPPRIEHLVVSEGGPVLDFICKSLDLP 1276
               S  + G   ++S+ D +P+Y RLLPCP    PPRIEHLV+SEGGPVL+ ICK+LDLP
Sbjct: 58   AEFSTTDAGNLTATSSSDSFPKYDRLLPCPSHKNPPRIEHLVISEGGPVLELICKALDLP 117

Query: 1275 PLFVADLIHFGAVYYALVCPKPPPSATPEQIRLFKEVTSPSILKKRLSVKGKTVREAQKT 1096
            PL+V+DLI FGAVYYALVCP+PPP+AT EQIR+FKEVT PS+L+KR S+KGKTVREAQKT
Sbjct: 118  PLYVSDLIQFGAVYYALVCPQPPPNATEEQIRVFKEVTEPSVLRKRASIKGKTVREAQKT 177

Query: 1095 FRITHVHEFVEAGTYIRVHVHPKRFPRSYEIDWKSRIIAVAESYVVLDKPAGTSVGGTTD 916
            FR+THV +FVE GTY+RVHVHPKRFPRSYEIDW+SRIIAVAESYVVLDKPAGTSVGGTTD
Sbjct: 178  FRVTHVDQFVEPGTYLRVHVHPKRFPRSYEIDWRSRIIAVAESYVVLDKPAGTSVGGTTD 237

Query: 915  NIEESCATFATRALGLAIPLKTTHQIDNCTAGCVVLARTKEYCSVFHGKIREKRVKKLYR 736
            NIEESCATFATRALG+  PL TTHQIDNCT GCVVLARTK+YCS+FHGKIREK+VKKLY 
Sbjct: 238  NIEESCATFATRALGMTTPLMTTHQIDNCTEGCVVLARTKDYCSIFHGKIREKKVKKLYL 297

Query: 735  ALAAAPVPLGTITHYMRPVNIAPRLVSKDFHRGWNLCQLDVLECKEVPWPNVFIQEKYCV 556
            ALAA+P+P G ITHYMRP+N+APRL+S+DF +GW+LCQL+VLEC+++PWP   IQ+KYCV
Sbjct: 298  ALAASPLPTGIITHYMRPINMAPRLISEDFIKGWHLCQLEVLECRKIPWPTTAIQDKYCV 357

Query: 555  DDCGWPSKDVAYECKINLLTGRTHQIRAQFAAYGAPIVGDSMYMPAVIAERSSPGLNPFG 376
            +DCGWPS+D AYECKINLLTG+THQIRAQFAAY AP++GDSMYMPA IA+ S+PGLNPFG
Sbjct: 358  EDCGWPSQDYAYECKINLLTGKTHQIRAQFAAYKAPLIGDSMYMPAAIADVSNPGLNPFG 417

Query: 375  EHGKLYPTEEDKANAVEEWMARHGKEPSVAIGLQAFQISWDEGEHFYECGPPWWR 211
            ++ K + +E +K  AV  WMA+HGKEPSVAIGLQA QISWD+ EHFYE G PWWR
Sbjct: 418  KYKKDFSSESEKETAVVNWMAQHGKEPSVAIGLQACQISWDDDEHFYEAGLPWWR 472


>ref|XP_002518515.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223542360|gb|EEF43902.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 476

 Score =  691 bits (1782), Expect = 0.0
 Identities = 332/468 (70%), Positives = 389/468 (83%), Gaps = 4/468 (0%)
 Frame = -1

Query: 1602 ISSLCTSNCKTLSLPITLLRTLATSH---FLTKQNKN-LGNFSWGSSNRTFTRHASSKAE 1435
            ++S+     ++   P+T+LRTLA++H   F     KN L  FS  S  R F    SSK E
Sbjct: 6    LASIFAGGYRSFVTPVTVLRTLASTHAYSFHRHHPKNALARFSLNSHERKFCCE-SSKPE 64

Query: 1434 IGVTISSSTHDGYPEYGRLLPCPLENGPPRIEHLVVSEGGPVLDFICKSLDLPPLFVADL 1255
            +  T ++S  +G  +Y RLLPCP  N PPRIEHLVV E GPVLD+ICK+LDLPPLFVADL
Sbjct: 65   VAYTTNTSCVNGNSDYDRLLPCPSYNRPPRIEHLVVLEEGPVLDYICKALDLPPLFVADL 124

Query: 1254 IHFGAVYYALVCPKPPPSATPEQIRLFKEVTSPSILKKRLSVKGKTVREAQKTFRITHVH 1075
            I FGAV+YALVCP+PP +ATPEQIRLF++ T+PS+LKKR S+KGKTVREAQKTFRITHV 
Sbjct: 125  IDFGAVHYALVCPRPPTTATPEQIRLFEKFTAPSVLKKRSSIKGKTVREAQKTFRITHVD 184

Query: 1074 EFVEAGTYIRVHVHPKRFPRSYEIDWKSRIIAVAESYVVLDKPAGTSVGGTTDNIEESCA 895
            +++EAGTY+RVHVHPKRFPR Y+IDWKSRIIAV + YVVLDKPAGTSVGGT DNIEESCA
Sbjct: 185  QYLEAGTYLRVHVHPKRFPRCYDIDWKSRIIAVTDCYVVLDKPAGTSVGGTADNIEESCA 244

Query: 894  TFATRALGLAIPLKTTHQIDNCTAGCVVLARTKEYCSVFHGKIREKRVKKLYRALAAAPV 715
            TFATRALGL  PLKTTHQIDNCT GCVVLAR+KEYCSVFHGKIREK+VKKLY ALAA+PV
Sbjct: 245  TFATRALGLTTPLKTTHQIDNCTEGCVVLARSKEYCSVFHGKIREKKVKKLYLALAASPV 304

Query: 714  PLGTITHYMRPVNIAPRLVSKDFHRGWNLCQLDVLECKEVPWPNVFIQEKYCVDDCGWPS 535
            P+G I +YMRPVNIAPRL+S++F  GW+LCQL+VLEC++VPWP+  I+EKY V+DCGWPS
Sbjct: 305  PVGVIKNYMRPVNIAPRLLSEEFVNGWHLCQLEVLECRKVPWPDAAIEEKYSVEDCGWPS 364

Query: 534  KDVAYECKINLLTGRTHQIRAQFAAYGAPIVGDSMYMPAVIAERSSPGLNPFGEHGKLYP 355
            KD AYECKINLLTGRTHQIRAQ AA GAP+VGDSMYMPA +AE ++PGLNPFG+H K Y 
Sbjct: 365  KDFAYECKINLLTGRTHQIRAQLAASGAPLVGDSMYMPAAVAEMANPGLNPFGKHRKQYT 424

Query: 354  TEEDKANAVEEWMARHGKEPSVAIGLQAFQISWDEGEHFYECGPPWWR 211
             E D++ AV EW+A+HGKEP VAIGLQA +ISWDEG+H Y+ G PWWR
Sbjct: 425  NESDESMAVAEWVAQHGKEPKVAIGLQACEISWDEGKHIYKAGSPWWR 472


>ref|XP_003547248.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Glycine
            max]
          Length = 473

 Score =  678 bits (1749), Expect = 0.0
 Identities = 323/472 (68%), Positives = 383/472 (81%), Gaps = 6/472 (1%)
 Frame = -1

Query: 1608 TFISSLCTSNCKTLSLPITLLRTLATSHFLTKQNKNLGNFSW--GSSNRTFTRHASSK-- 1441
            T  S L + +C++L++P    R +  S      N+N    SW   SS+ + T  A     
Sbjct: 2    TVASMLFSGSCRSLAMPAAA-RAVRISRAALVNNRNKHPPSWCCRSSHNSNTALAGEAEF 60

Query: 1440 --AEIGVTISSSTHDGYPEYGRLLPCPLENGPPRIEHLVVSEGGPVLDFICKSLDLPPLF 1267
               + G+  ++S+ D + +Y RLLPCP    PPRIEHLVVSEGGPVL+ ICK+LDLPPL+
Sbjct: 61   LTTDAGILNATSSSDSFRKYDRLLPCPSHKTPPRIEHLVVSEGGPVLEHICKALDLPPLY 120

Query: 1266 VADLIHFGAVYYALVCPKPPPSATPEQIRLFKEVTSPSILKKRLSVKGKTVREAQKTFRI 1087
            V+DLI FGAVYYALVCP+PPP+AT EQIR+FKEVT PS+L+KR S+KGKTVREAQKTFR+
Sbjct: 121  VSDLIQFGAVYYALVCPQPPPNATEEQIRVFKEVTEPSVLRKRASIKGKTVREAQKTFRV 180

Query: 1086 THVHEFVEAGTYIRVHVHPKRFPRSYEIDWKSRIIAVAESYVVLDKPAGTSVGGTTDNIE 907
            THV +FVE GTY+RVHVHPKR PR YEIDW+SRII VAESYVVLDKPAGTSVGGTTDNIE
Sbjct: 181  THVDQFVEPGTYLRVHVHPKRSPRCYEIDWRSRIITVAESYVVLDKPAGTSVGGTTDNIE 240

Query: 906  ESCATFATRALGLAIPLKTTHQIDNCTAGCVVLARTKEYCSVFHGKIREKRVKKLYRALA 727
            ESCATFATRALG+  PL TTHQIDNCT GCVVLARTKEYCSVFHGKIREK+VKK Y ALA
Sbjct: 241  ESCATFATRALGMTTPLMTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKFYLALA 300

Query: 726  AAPVPLGTITHYMRPVNIAPRLVSKDFHRGWNLCQLDVLECKEVPWPNVFIQEKYCVDDC 547
            A P+P G ITHYMRP+++APRL+S+DF +GW+LCQL+VLEC++VPWP   IQ+KYC++DC
Sbjct: 301  AFPLPTGIITHYMRPIDMAPRLISEDFIKGWHLCQLEVLECRKVPWPATAIQDKYCIEDC 360

Query: 546  GWPSKDVAYECKINLLTGRTHQIRAQFAAYGAPIVGDSMYMPAVIAERSSPGLNPFGEHG 367
            GWPS+D AYECKINLLTG+THQIRAQFAAY AP++GDSMYMPA IA  S+PGLNPFG++ 
Sbjct: 361  GWPSQDYAYECKINLLTGKTHQIRAQFAAYKAPLIGDSMYMPAAIANMSNPGLNPFGKYK 420

Query: 366  KLYPTEEDKANAVEEWMARHGKEPSVAIGLQAFQISWDEGEHFYECGPPWWR 211
            K + +E +K  AV  W+A+HGKEPSVAIGLQA QISWD+ EHFYE   PWWR
Sbjct: 421  KDFSSESEKETAVVNWIAQHGKEPSVAIGLQACQISWDDDEHFYEASSPWWR 472