BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00016218
         (1906 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002305447.1| chromatin remodeling complex subunit [Populu...   429   0.0  
emb|CAN62867.1| hypothetical protein VITISV_015925 [Vitis vinifera]   427   0.0  
ref|XP_002273814.1| PREDICTED: DNA repair and recombination prot...   427   0.0  
ref|XP_002275596.1| PREDICTED: DNA repair and recombination prot...   429   0.0  
ref|XP_004170971.1| PREDICTED: SWI/SNF-related matrix-associated...   442   0.0  

>ref|XP_002305447.1| chromatin remodeling complex subunit [Populus trichocarpa]
            gi|222848411|gb|EEE85958.1| chromatin remodeling complex
            subunit [Populus trichocarpa]
          Length = 630

 Score =  429 bits (1104), Expect(2) = 0.0
 Identities = 204/285 (71%), Positives = 241/285 (84%)
 Frame = -2

Query: 1881 DLAVCDISVHPRHMKQMKAHQLEGFNFLVRNLVSGDPGGCILAHAPGSGKTFMIISFIQS 1702
            DL V DI  HPRHMKQMK HQ+EGFNFL  NLV+ +PGGCILAHAPGSGKTFMIISF+QS
Sbjct: 77   DLMVTDIPAHPRHMKQMKPHQVEGFNFLRNNLVADNPGGCILAHAPGSGKTFMIISFMQS 136

Query: 1701 FLAKYPHARPLVVLPKGILATWKKEFSIWQVEDFPLYDFYTSKAESREEQLIILKQWVEH 1522
            FLAKYPHA+ LVVLPKGIL TWK+EF IWQ+ED PLYDFY+ KA+SR++QL +L QWVE 
Sbjct: 137  FLAKYPHAKSLVVLPKGILPTWKREFQIWQIEDIPLYDFYSVKADSRQQQLEVLNQWVEQ 196

Query: 1521 KGILFVGYKQFANIVSKSDINSSAAACHDILLQVPTILICDEGHTPRNEDTDVLNSLAKV 1342
            K ILF+GYKQF++IV     N  +  C +ILL+ P+ILI DE HTPRNE+TDVL SLAKV
Sbjct: 197  KSILFLGYKQFSSIVCDDGKNQVSVTCQEILLRRPSILILDESHTPRNENTDVLQSLAKV 256

Query: 1341 QTPRKVVLSGTLFQNHVKEVFNILNLVRPKFLKSDTSKSIKRRVMSRVNISGGRRQVKAG 1162
            QTPRKVVLSGTL+QNH KEVFN+LNLVRPKFL+ DTS++I +R++S+VNI G R+Q KAG
Sbjct: 257  QTPRKVVLSGTLYQNHAKEVFNVLNLVRPKFLRMDTSRAIVKRILSKVNIPGARKQFKAG 316

Query: 1161 ADTLFYEMVEETLRNDDNLKRKVTVIQDLREMTSNVLHYYKGDFL 1027
            AD  FY++VE+T++ D + KRKVTVI+DL EMTS VLHYYKGDFL
Sbjct: 317  ADAAFYDLVEQTIQKDQDFKRKVTVIRDLHEMTSKVLHYYKGDFL 361



 Score =  315 bits (806), Expect(2) = 0.0
 Identities = 160/254 (62%), Positives = 197/254 (77%), Gaps = 1/254 (0%)
 Frame = -3

Query: 947  IEGLKKVE-KFKRTAIGTAVYLHPLLKEFSEGAAIGDKGCKINEERLDKLLNSIDLRDGV 771
            ++ LKK+  KFKR+++G+AVYLHP L  FS+ +AI D       + +D LL ++D+RDGV
Sbjct: 384  VKKLKKLAMKFKRSSVGSAVYLHPKLNSFSKNSAITD-------DMMDDLLETVDVRDGV 436

Query: 770  KAKFFLNILGLCESSGEKLLVFSQYLLPLKFLERLVVHTKGWRVGKEIFMISGDXXXXXX 591
            KAKFFLNIL LCES+GEKLLVFSQYL PLKFLERLV+  KGW +GKEIF+ISG+      
Sbjct: 437  KAKFFLNILSLCESAGEKLLVFSQYLTPLKFLERLVMKVKGWILGKEIFVISGESSSDHR 496

Query: 590  XXXXXXXXXSADAKIFFGSIKACGEGISLVGASRVLIMDVHLNPSVTRQAIGRTFRPGQV 411
                     S DAK+FFGSIKACGEGISLVGASR++I+DVHLNPSVT QAIGR FRPGQ 
Sbjct: 497  EWSMERFNNSMDAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTCQAIGRAFRPGQT 556

Query: 410  RKVYTYRLVASASPEEENHNTSFRKELISKMWFEWSEFSGHTNFDMETVNLCDSGDEFWQ 231
            +KVY YRLVA+ SPEEE+H T FRKE I+KMWFEW+E+ G+ +F++ TV L DSGD F +
Sbjct: 557  KKVYAYRLVAADSPEEEDHTTCFRKEAIAKMWFEWNEYCGYQDFEVGTVELDDSGDRFLE 616

Query: 230  SPSLREDVKDVYKR 189
            S  +REDV+ +YKR
Sbjct: 617  SLLVREDVRVLYKR 630


>emb|CAN62867.1| hypothetical protein VITISV_015925 [Vitis vinifera]
          Length = 1187

 Score =  427 bits (1098), Expect(2) = 0.0
 Identities = 206/288 (71%), Positives = 243/288 (84%)
 Frame = -2

Query: 1890 TSHDLAVCDISVHPRHMKQMKAHQLEGFNFLVRNLVSGDPGGCILAHAPGSGKTFMIISF 1711
            + H+L V +I  HPRH  QMK HQ+EGFNFLV NLV+ +PGGCILAHAPGSGKTFMIISF
Sbjct: 564  SEHNLTVTEIHAHPRHSMQMKPHQVEGFNFLVSNLVAENPGGCILAHAPGSGKTFMIISF 623

Query: 1710 IQSFLAKYPHARPLVVLPKGILATWKKEFSIWQVEDFPLYDFYTSKAESREEQLIILKQW 1531
            +QSFLAKYP ARPLVVLPKGILATWKKEF  WQVED PLYDFY+ KA+SR +QL +LKQW
Sbjct: 624  MQSFLAKYPQARPLVVLPKGILATWKKEFLTWQVEDIPLYDFYSVKADSRPQQLEVLKQW 683

Query: 1530 VEHKGILFVGYKQFANIVSKSDINSSAAACHDILLQVPTILICDEGHTPRNEDTDVLNSL 1351
            V  K ILF+GYKQF++IV     + +  AC +ILL+ P ILI DEGHTPRNE+TDVL SL
Sbjct: 684  VAEKSILFLGYKQFSSIVCGDGASKATIACQEILLKAPQILILDEGHTPRNENTDVLYSL 743

Query: 1350 AKVQTPRKVVLSGTLFQNHVKEVFNILNLVRPKFLKSDTSKSIKRRVMSRVNISGGRRQV 1171
            AKVQTPRKVVLSGTL+QNHVKEVFNILNLVRPKFLK ++S+++ +R+MS+V+I G R+Q+
Sbjct: 744  AKVQTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKLESSRAVVKRIMSKVDIMGVRKQL 803

Query: 1170 KAGADTLFYEMVEETLRNDDNLKRKVTVIQDLREMTSNVLHYYKGDFL 1027
            K+ A   FY++VE TL+ DDN +RK+TVIQDLREMTS VLHYYKGDFL
Sbjct: 804  KSNAADAFYDLVENTLQKDDNFRRKITVIQDLREMTSKVLHYYKGDFL 851



 Score =  315 bits (807), Expect(2) = 0.0
 Identities = 159/258 (61%), Positives = 199/258 (77%), Gaps = 5/258 (1%)
 Frame = -3

Query: 947  IEGLKKVE-KFKRTAIGTAVYLHPLLKEFSEGAAIGDKGCKINE----ERLDKLLNSIDL 783
            +  L K E KFK+ ++G+AVYLHP LK F+E  A  +   K +E    +++D++L  +D+
Sbjct: 874  VGNLNKFERKFKKNSVGSAVYLHPQLKYFAEKLAANES--KTDEMTCQKKMDEILEQLDV 931

Query: 782  RDGVKAKFFLNILGLCESSGEKLLVFSQYLLPLKFLERLVVHTKGWRVGKEIFMISGDXX 603
            RDGVKAKFFLN+L LC+SSGEKLLVFSQYLLPL+FLE+L +  KGW  GKEIF ISG+  
Sbjct: 932  RDGVKAKFFLNVLALCQSSGEKLLVFSQYLLPLRFLEKLTMKVKGWSPGKEIFAISGESS 991

Query: 602  XXXXXXXXXXXXXSADAKIFFGSIKACGEGISLVGASRVLIMDVHLNPSVTRQAIGRTFR 423
                         S DA++FFGSIKACGEGISLVGASRVLI+DVHLNPSVTRQAIGR FR
Sbjct: 992  SEQREWSMERFNTSPDARVFFGSIKACGEGISLVGASRVLILDVHLNPSVTRQAIGRAFR 1051

Query: 422  PGQVRKVYTYRLVASASPEEENHNTSFRKELISKMWFEWSEFSGHTNFDMETVNLCDSGD 243
            PGQ +KV+ Y+LVA+ SPEEE+HN+ F+KELISKMWFEW+E+ GH  F+ ETV++ DSGD
Sbjct: 1052 PGQKKKVHVYKLVAADSPEEEDHNSCFKKELISKMWFEWNEYCGHHEFEAETVDVSDSGD 1111

Query: 242  EFWQSPSLREDVKDVYKR 189
             F +SP LRED+K +Y+R
Sbjct: 1112 IFLESPLLREDIKVLYRR 1129


>ref|XP_002273814.1| PREDICTED: DNA repair and recombination protein RAD54-like [Vitis
            vinifera]
          Length = 903

 Score =  427 bits (1098), Expect(2) = 0.0
 Identities = 206/288 (71%), Positives = 243/288 (84%)
 Frame = -2

Query: 1890 TSHDLAVCDISVHPRHMKQMKAHQLEGFNFLVRNLVSGDPGGCILAHAPGSGKTFMIISF 1711
            + H+L V +I  HPRH  QMK HQ+EGFNFLV NLV+ +PGGCILAHAPGSGKTFMIISF
Sbjct: 338  SEHNLTVTEIHAHPRHSMQMKPHQVEGFNFLVSNLVAENPGGCILAHAPGSGKTFMIISF 397

Query: 1710 IQSFLAKYPHARPLVVLPKGILATWKKEFSIWQVEDFPLYDFYTSKAESREEQLIILKQW 1531
            +QSFLAKYP ARPLVVLPKGILATWKKEF  WQVED PLYDFY+ KA+SR +QL +LKQW
Sbjct: 398  MQSFLAKYPQARPLVVLPKGILATWKKEFLTWQVEDIPLYDFYSVKADSRPQQLEVLKQW 457

Query: 1530 VEHKGILFVGYKQFANIVSKSDINSSAAACHDILLQVPTILICDEGHTPRNEDTDVLNSL 1351
            V  K ILF+GYKQF++IV     + +  AC +ILL+ P ILI DEGHTPRNE+TDVL SL
Sbjct: 458  VAEKSILFLGYKQFSSIVCGDGASKATIACQEILLKAPQILILDEGHTPRNENTDVLYSL 517

Query: 1350 AKVQTPRKVVLSGTLFQNHVKEVFNILNLVRPKFLKSDTSKSIKRRVMSRVNISGGRRQV 1171
            AKVQTPRKVVLSGTL+QNHVKEVFNILNLVRPKFLK ++S+++ +R+MS+V+I G R+Q+
Sbjct: 518  AKVQTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKLESSRAVVKRIMSKVDIMGVRKQL 577

Query: 1170 KAGADTLFYEMVEETLRNDDNLKRKVTVIQDLREMTSNVLHYYKGDFL 1027
            K+ A   FY++VE TL+ DDN +RK+TVIQDLREMTS VLHYYKGDFL
Sbjct: 578  KSNAADAFYDLVENTLQKDDNFRRKITVIQDLREMTSKVLHYYKGDFL 625



 Score =  313 bits (801), Expect(2) = 0.0
 Identities = 158/258 (61%), Positives = 198/258 (76%), Gaps = 5/258 (1%)
 Frame = -3

Query: 947  IEGLKKVE-KFKRTAIGTAVYLHPLLKEFSEGAAIGDKGCKINE----ERLDKLLNSIDL 783
            +  L K E KFK+ ++G+AVYLHP LK F+E  A  +   K +E    +++D++L  +D+
Sbjct: 648  VGNLNKFERKFKKNSVGSAVYLHPQLKYFAEKLAANES--KTDEMTCQKKMDEILEQLDV 705

Query: 782  RDGVKAKFFLNILGLCESSGEKLLVFSQYLLPLKFLERLVVHTKGWRVGKEIFMISGDXX 603
            RDGVKAKFFLN+L LC+SSGEKLLVFSQYLLPL+FLE+L +  KGW  GKEIF ISG+  
Sbjct: 706  RDGVKAKFFLNVLALCQSSGEKLLVFSQYLLPLRFLEKLTMKVKGWSPGKEIFAISGESS 765

Query: 602  XXXXXXXXXXXXXSADAKIFFGSIKACGEGISLVGASRVLIMDVHLNPSVTRQAIGRTFR 423
                         S DA++FFGSIKACGEGISLVGASRVLI+DVHLNPSVTRQAIGR FR
Sbjct: 766  SEQREWSMERFNTSPDARVFFGSIKACGEGISLVGASRVLILDVHLNPSVTRQAIGRAFR 825

Query: 422  PGQVRKVYTYRLVASASPEEENHNTSFRKELISKMWFEWSEFSGHTNFDMETVNLCDSGD 243
            PGQ +KV+ Y+LVA+ SPEEE+HN+ F+KELISKMWFEW+E+ GH  F+ ETV++ DSGD
Sbjct: 826  PGQKKKVHVYKLVAADSPEEEDHNSCFKKELISKMWFEWNEYCGHHEFEAETVDVSDSGD 885

Query: 242  EFWQSPSLREDVKDVYKR 189
             F +SP LRED+  +Y+R
Sbjct: 886  LFLESPLLREDITVLYRR 903


>ref|XP_002275596.1| PREDICTED: DNA repair and recombination protein RAD54-like [Vitis
            vinifera]
          Length = 944

 Score =  429 bits (1102), Expect(2) = 0.0
 Identities = 208/288 (72%), Positives = 243/288 (84%)
 Frame = -2

Query: 1890 TSHDLAVCDISVHPRHMKQMKAHQLEGFNFLVRNLVSGDPGGCILAHAPGSGKTFMIISF 1711
            + H L V +I  HPRH  QMK HQ+EGFNFLV NLV+ +PGGCILAHAPGSGKTFMIISF
Sbjct: 379  SEHSLIVTEIHAHPRHSMQMKPHQVEGFNFLVSNLVADNPGGCILAHAPGSGKTFMIISF 438

Query: 1710 IQSFLAKYPHARPLVVLPKGILATWKKEFSIWQVEDFPLYDFYTSKAESREEQLIILKQW 1531
            +QSFLAKYP ARPLVVLPKGILATWKKEF  WQVED PLYDFY+ KA+SR +QL +LKQW
Sbjct: 439  MQSFLAKYPQARPLVVLPKGILATWKKEFLTWQVEDIPLYDFYSVKADSRPQQLEVLKQW 498

Query: 1530 VEHKGILFVGYKQFANIVSKSDINSSAAACHDILLQVPTILICDEGHTPRNEDTDVLNSL 1351
            V  K ILF+GYKQF++IV     + +A AC +ILL+ P ILI DEGHTPRNE+TDVL SL
Sbjct: 499  VAEKSILFLGYKQFSSIVCGDGASKAAMACQEILLKAPQILILDEGHTPRNENTDVLYSL 558

Query: 1350 AKVQTPRKVVLSGTLFQNHVKEVFNILNLVRPKFLKSDTSKSIKRRVMSRVNISGGRRQV 1171
            AKVQTPRKVVLSGTL+QNHVKEVFNILNLVRPKFLK ++S++I +R+MS+V+I G R+Q+
Sbjct: 559  AKVQTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKLESSRAIVKRIMSKVDIMGVRKQL 618

Query: 1170 KAGADTLFYEMVEETLRNDDNLKRKVTVIQDLREMTSNVLHYYKGDFL 1027
            K+ A   FY++VE TL+ DDN +RK+TVIQDLREMTS VLHYYKGDFL
Sbjct: 619  KSNAADAFYDLVENTLQKDDNFRRKITVIQDLREMTSKVLHYYKGDFL 666



 Score =  310 bits (793), Expect(2) = 0.0
 Identities = 155/256 (60%), Positives = 195/256 (76%), Gaps = 3/256 (1%)
 Frame = -3

Query: 947  IEGLKKVE-KFKRTAIGTAVYLHPLLKEFSEGAAIGDKGCK--INEERLDKLLNSIDLRD 777
            +  L K E KFK+ ++G+AVYLHP LK F+E  A  +        ++++D++L  +D+R+
Sbjct: 689  VGNLNKFERKFKKNSVGSAVYLHPQLKYFAEKLAANESKTDEMTYQKKMDEILEQLDVRE 748

Query: 776  GVKAKFFLNILGLCESSGEKLLVFSQYLLPLKFLERLVVHTKGWRVGKEIFMISGDXXXX 597
            GVK KFFLN+L LC+S+GEKLLVFSQYLLPL+FLE+L +   GW  GKEIF+ISG+    
Sbjct: 749  GVKVKFFLNVLALCQSAGEKLLVFSQYLLPLRFLEKLTMKVNGWSSGKEIFVISGESSSE 808

Query: 596  XXXXXXXXXXXSADAKIFFGSIKACGEGISLVGASRVLIMDVHLNPSVTRQAIGRTFRPG 417
                       S DA++FFGSIKACGEGISLVGASRVLI+DVHLNPSVTRQAIGR FRPG
Sbjct: 809  QREWSMERFNTSPDARVFFGSIKACGEGISLVGASRVLILDVHLNPSVTRQAIGRAFRPG 868

Query: 416  QVRKVYTYRLVASASPEEENHNTSFRKELISKMWFEWSEFSGHTNFDMETVNLCDSGDEF 237
            Q +KV+ Y+LVA+ SPEEE+HNT F+KELISKMWFEW+E+ G+  F+ ETVN+ DSGD F
Sbjct: 869  QKKKVHVYKLVAADSPEEEDHNTCFKKELISKMWFEWNEYCGNHEFEAETVNVSDSGDLF 928

Query: 236  WQSPSLREDVKDVYKR 189
             +SP LREDV  +YKR
Sbjct: 929  LESPLLREDVTVLYKR 944


>ref|XP_004170971.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin subfamily A containing DEAD/H box
            1B-like [Cucumis sativus]
          Length = 903

 Score =  442 bits (1136), Expect(2) = 0.0
 Identities = 212/292 (72%), Positives = 250/292 (85%), Gaps = 1/292 (0%)
 Frame = -2

Query: 1899 GVNTSHD-LAVCDISVHPRHMKQMKAHQLEGFNFLVRNLVSGDPGGCILAHAPGSGKTFM 1723
            GV  S D L V +IS HPRHMKQMK HQ+EGFNFL+ NLVS +PGGCILAHAPGSGKTFM
Sbjct: 343  GVKISEDDLTVTEISAHPRHMKQMKPHQIEGFNFLISNLVSDNPGGCILAHAPGSGKTFM 402

Query: 1722 IISFIQSFLAKYPHARPLVVLPKGILATWKKEFSIWQVEDFPLYDFYTSKAESREEQLII 1543
            IISF+QSFLAKYP ARPLVVLPKGILATWKKEF IWQVED PLYDFY+ KA++R +QL +
Sbjct: 403  IISFMQSFLAKYPQARPLVVLPKGILATWKKEFQIWQVEDIPLYDFYSVKADNRAQQLTV 462

Query: 1542 LKQWVEHKGILFVGYKQFANIVSKSDINSSAAACHDILLQVPTILICDEGHTPRNEDTDV 1363
            L QWVEHK ILF+GYKQF+ IV   + ++++ AC +ILLQVPTILI DEGHTPRNE+TD 
Sbjct: 463  LNQWVEHKSILFLGYKQFSTIVCDVETSAASTACQNILLQVPTILILDEGHTPRNENTDT 522

Query: 1362 LNSLAKVQTPRKVVLSGTLFQNHVKEVFNILNLVRPKFLKSDTSKSIKRRVMSRVNISGG 1183
            L +LAKV+TPRKVVLSGTL+QNHVKEVFNI+NLVRPKF++S+TS+ I +R+MSRV+I G 
Sbjct: 523  LQTLAKVRTPRKVVLSGTLYQNHVKEVFNIVNLVRPKFMRSETSRPIIKRIMSRVDIPGA 582

Query: 1182 RRQVKAGADTLFYEMVEETLRNDDNLKRKVTVIQDLREMTSNVLHYYKGDFL 1027
            R+Q KAG D  FY++VE TL+ D + +RKV+VI DLREMTS +LHYYKGDFL
Sbjct: 583  RKQFKAGVDAAFYDLVEHTLQKDTDFRRKVSVIHDLREMTSKILHYYKGDFL 634



 Score =  296 bits (758), Expect(2) = 0.0
 Identities = 147/253 (58%), Positives = 192/253 (75%), Gaps = 1/253 (0%)
 Frame = -3

Query: 944  EGLKKVE-KFKRTAIGTAVYLHPLLKEFSEGAAIGDKGCKINEERLDKLLNSIDLRDGVK 768
            E +KK   KFK ++ G+AVYLHP L  FS  AA+ D       +++D++++ +D++DGVK
Sbjct: 658  EKVKKFNRKFKISSAGSAVYLHPKLNVFSVNAAVTD-------DKIDEVIDKMDVKDGVK 710

Query: 767  AKFFLNILGLCESSGEKLLVFSQYLLPLKFLERLVVHTKGWRVGKEIFMISGDXXXXXXX 588
             KFFLN+L LC ++GEKLLVFSQYLLPLKF+ERLVV  KGW  G+E FMISG+       
Sbjct: 711  TKFFLNLLNLCATTGEKLLVFSQYLLPLKFMERLVVQKKGWSPGRETFMISGETTPEQRE 770

Query: 587  XXXXXXXXSADAKIFFGSIKACGEGISLVGASRVLIMDVHLNPSVTRQAIGRTFRPGQVR 408
                    S DA++FFGSIKACGEGISLVGASR++I+DVHLNPSVTRQAIGR FRPGQ +
Sbjct: 771  WSMERFNNSPDARVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQTK 830

Query: 407  KVYTYRLVASASPEEENHNTSFRKELISKMWFEWSEFSGHTNFDMETVNLCDSGDEFWQS 228
            KV+ YRLVA  SPEE +H+T F+KELI+KMWFEW+E+ G+ +F++ETV++   GD F ++
Sbjct: 831  KVFAYRLVAGDSPEEGDHSTCFKKELIAKMWFEWNEYCGYHDFEVETVDVKQCGDNFLET 890

Query: 227  PSLREDVKDVYKR 189
            P L +DVK +Y+R
Sbjct: 891  PLLGQDVKVLYRR 903