BLASTX nr result
ID: Coptis23_contig00016192
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00016192
(395 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat... 199 2e-49
ref|XP_002524089.1| pentatricopeptide repeat-containing protein,... 197 6e-49
ref|XP_003518162.1| PREDICTED: putative pentatricopeptide repeat... 193 1e-47
ref|XP_002308333.1| predicted protein [Populus trichocarpa] gi|2... 188 4e-46
ref|XP_002333469.1| predicted protein [Populus trichocarpa] gi|2... 188 4e-46
>ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g06400, mitochondrial-like [Vitis vinifera]
Length = 1048
Score = 199 bits (505), Expect = 2e-49
Identities = 91/131 (69%), Positives = 113/131 (86%)
Frame = -1
Query: 395 QAGVNPTVHVRTSLMVHYFKDKQIEKAMDIFKKMRAEGCEPTIVTYSALIRGYMNLGMVS 216
Q G++PTVHV TSL+VH+FK+KQ+ KA++ F+KM+ EGCEPTIVTYSALIRG+M +G
Sbjct: 901 QIGIHPTVHVYTSLIVHFFKEKQMRKALETFQKMKEEGCEPTIVTYSALIRGHMAMGNFV 960
Query: 215 DARNVFRRLKLKGPYPDFKTYSMFITCLCEIGRSEEALQLIDEMLDCGIFPSTVNFRTIF 36
DARNVF L+LKGP+PDFKTYSMFI+CLC++G+SEEALQL+ EMLD GI PST+NFRT+
Sbjct: 961 DARNVFGLLQLKGPFPDFKTYSMFISCLCKVGKSEEALQLLSEMLDSGIIPSTINFRTVM 1020
Query: 35 HGLNRQGKQDL 3
GLNR+GK L
Sbjct: 1021 FGLNREGKHSL 1031
Score = 73.2 bits (178), Expect = 2e-11
Identities = 36/131 (27%), Positives = 72/131 (54%)
Frame = -1
Query: 395 QAGVNPTVHVRTSLMVHYFKDKQIEKAMDIFKKMRAEGCEPTIVTYSALIRGYMNLGMVS 216
++G PT+ T LM H F+ + +K ++ +M G EP V +A++ G++ +
Sbjct: 442 ESGYLPTISTYTELMQHLFRLNEYQKGCKLYDEMLERGVEPDSVAITAMVAGHVRQNHIF 501
Query: 215 DARNVFRRLKLKGPYPDFKTYSMFITCLCEIGRSEEALQLIDEMLDCGIFPSTVNFRTIF 36
+A VF ++ +G +K+YS+FI LC+I R++E +++++EM I F +
Sbjct: 502 EAWKVFNSMQERGIRATWKSYSVFIKELCKISRTDEVIKVLNEMQASKIIIGDEVFNWVI 561
Query: 35 HGLNRQGKQDL 3
L ++G+ ++
Sbjct: 562 SYLEKKGETEM 572
Score = 55.8 bits (133), Expect = 3e-06
Identities = 43/160 (26%), Positives = 60/160 (37%), Gaps = 35/160 (21%)
Frame = -1
Query: 395 QAGVNPTVHVRTSLMVHYFKDKQIEKAMDIFKKMRAEGCEPTIVTYSALIRGYMNLGMVS 216
+ G + T L+ HY K K I KA+ I +KM GCEP + Y LIR N
Sbjct: 233 EKGCKRDIKTWTILISHYGKAKLIGKALLILEKMWKSGCEPDVAAYMILIRSLCNAQKAD 292
Query: 215 DARNVFRRLKLKGPYPDFKTYSMFITCL-------------------------------- 132
A ++ + K D Y + +TCL
Sbjct: 293 IALEFYKEMVQKEMGLDMSLYELLLTCLAGSGDIAGVQLVADDMIRRSQIPERDVFSCML 352
Query: 131 ---CEIGRSEEALQLIDEMLDCGIFPSTVNFRTIFHGLNR 21
C GR EAL+LI ++ D + +F T+ GL R
Sbjct: 353 KSFCIAGRIREALELIRDLNDKNLTLEPNDFETLVKGLCR 392
>ref|XP_002524089.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223536657|gb|EEF38299.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 1072
Score = 197 bits (502), Expect = 6e-49
Identities = 92/131 (70%), Positives = 111/131 (84%)
Frame = -1
Query: 395 QAGVNPTVHVRTSLMVHYFKDKQIEKAMDIFKKMRAEGCEPTIVTYSALIRGYMNLGMVS 216
+AG+NPTVHV TSL+VH+FK+KQIEKAM IF+KM+ +GCEPT+VTYSALIRGYMN+
Sbjct: 923 EAGINPTVHVYTSLIVHFFKEKQIEKAMQIFEKMQQDGCEPTVVTYSALIRGYMNMERAD 982
Query: 215 DARNVFRRLKLKGPYPDFKTYSMFITCLCEIGRSEEALQLIDEMLDCGIFPSTVNFRTIF 36
DA +V LKLKGP PDFKTYSMFI+CLC+ G+SEEALQL+ ML+ GI PST+NFRT+F
Sbjct: 983 DAWSVLNHLKLKGPKPDFKTYSMFISCLCKAGKSEEALQLLSRMLEDGIVPSTINFRTVF 1042
Query: 35 HGLNRQGKQDL 3
GLN +GK DL
Sbjct: 1043 FGLNCEGKNDL 1053
Score = 68.6 bits (166), Expect = 5e-10
Identities = 37/130 (28%), Positives = 66/130 (50%)
Frame = -1
Query: 395 QAGVNPTVHVRTSLMVHYFKDKQIEKAMDIFKKMRAEGCEPTIVTYSALIRGYMNLGMVS 216
++G+ P T LM F Q +K ++F +M G V A++ ++ +S
Sbjct: 447 ESGIQPITSTYTELMQCLFNLNQYDKGFELFNEMLERGIRVDSVATMAIVAAHVRQNHIS 506
Query: 215 DARNVFRRLKLKGPYPDFKTYSMFITCLCEIGRSEEALQLIDEMLDCGIFPSTVNFRTIF 36
+A VF +K KG P +K+YS+FI LC + R++E L+++ +M IF + F
Sbjct: 507 EAWEVFNTMKDKGANPTWKSYSIFIKELCRVSRTDEILKVLYKMQASKIFINNDIFNLAI 566
Query: 35 HGLNRQGKQD 6
+ ++G+ D
Sbjct: 567 AFMEKKGEVD 576
>ref|XP_003518162.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g06400, mitochondrial-like [Glycine max]
Length = 1034
Score = 193 bits (490), Expect = 1e-47
Identities = 87/131 (66%), Positives = 112/131 (85%)
Frame = -1
Query: 395 QAGVNPTVHVRTSLMVHYFKDKQIEKAMDIFKKMRAEGCEPTIVTYSALIRGYMNLGMVS 216
Q G+ PT+HV TSL+VH+FK+KQ+EKA++ F++M G EPTIVTYSALIRGYMN+G
Sbjct: 885 QNGITPTIHVFTSLIVHFFKEKQVEKAIETFEEMLHSGYEPTIVTYSALIRGYMNVGRPI 944
Query: 215 DARNVFRRLKLKGPYPDFKTYSMFITCLCEIGRSEEALQLIDEMLDCGIFPSTVNFRTIF 36
DA ++F R+KLKGP+PDFKTYSMF+TCLC++G+SEE ++LI EMLD GI PST+NFRT+
Sbjct: 945 DAWDIFYRMKLKGPFPDFKTYSMFLTCLCKVGKSEEGMRLISEMLDSGIVPSTINFRTVV 1004
Query: 35 HGLNRQGKQDL 3
+GLNR+GK DL
Sbjct: 1005 YGLNREGKHDL 1015
Score = 70.5 bits (171), Expect = 1e-10
Identities = 29/104 (27%), Positives = 68/104 (65%)
Frame = -1
Query: 395 QAGVNPTVHVRTSLMVHYFKDKQIEKAMDIFKKMRAEGCEPTIVTYSALIRGYMNLGMVS 216
++G PT+ T LM+H F+ + E+A ++ +M +G +P +V +A++ G+++ +S
Sbjct: 427 ESGCVPTISTYTELMLHLFRLDRYEEACMLYDEMLGKGIKPDVVAITAMVAGHVSQNHIS 486
Query: 215 DARNVFRRLKLKGPYPDFKTYSMFITCLCEIGRSEEALQLIDEM 84
DA +F+ ++ +G P +K++++FI LC+ ++++ ++++ EM
Sbjct: 487 DAWKMFKSMECQGIKPTWKSFAVFIKELCKASQTDDIVKVLHEM 530
Score = 54.7 bits (130), Expect = 8e-06
Identities = 39/163 (23%), Positives = 65/163 (39%), Gaps = 35/163 (21%)
Frame = -1
Query: 395 QAGVNPTVHVRTSLMVHYFKDKQIEKAMDIFKKMRAEGCEPTIVTYSALIRGYMNLGMVS 216
+ G+ V+ T ++ HY K ++I +A+ F+ M+ GCEP V+Y A+I + G
Sbjct: 218 ECGIQKDVNTWTIIINHYGKARKISEALLAFENMKRCGCEPDAVSYGAIICSLCSAGKRD 277
Query: 215 DARNVFRRLKLKGPYPDFKTYSMFITCL-------------------------------- 132
A + + K D + Y M + C+
Sbjct: 278 IAMEFYNEMVRKDMVLDVRLYKMVMNCMARSGDIAAVSLLGNDMIRLSVMPEKCVHGCML 337
Query: 131 ---CEIGRSEEALQLIDEMLDCGIFPSTVNFRTIFHGLNRQGK 12
C G EEAL+LI E+ + N+ T+ GL + G+
Sbjct: 338 KSFCISGSIEEALELIRELKSKDLDLEPENYETLVRGLCKAGR 380
>ref|XP_002308333.1| predicted protein [Populus trichocarpa] gi|222854309|gb|EEE91856.1|
predicted protein [Populus trichocarpa]
Length = 1048
Score = 188 bits (477), Expect = 4e-46
Identities = 88/131 (67%), Positives = 107/131 (81%)
Frame = -1
Query: 395 QAGVNPTVHVRTSLMVHYFKDKQIEKAMDIFKKMRAEGCEPTIVTYSALIRGYMNLGMVS 216
Q G+NPTVHV TSL+VH+F++K KA++IF+ M+ EGCEPTIVTYSALIRGYM+ V
Sbjct: 900 QVGINPTVHVYTSLIVHFFREKLASKALEIFESMKQEGCEPTIVTYSALIRGYMDTENVI 959
Query: 215 DARNVFRRLKLKGPYPDFKTYSMFITCLCEIGRSEEALQLIDEMLDCGIFPSTVNFRTIF 36
+A NVF LK KGP PDFKTYSMF++CLC G+SEEALQL+ +M+D GI PS VNFRT+F
Sbjct: 960 EAWNVFHSLKTKGPAPDFKTYSMFLSCLCRAGKSEEALQLLSDMVDNGIVPSNVNFRTVF 1019
Query: 35 HGLNRQGKQDL 3
GLNR+GKQ L
Sbjct: 1020 FGLNREGKQSL 1030
Score = 71.6 bits (174), Expect = 6e-11
Identities = 36/125 (28%), Positives = 68/125 (54%)
Frame = -1
Query: 380 PTVHVRTSLMVHYFKDKQIEKAMDIFKKMRAEGCEPTIVTYSALIRGYMNLGMVSDARNV 201
PT T LM H F+ + +K +++ +M G E V A++ G++ +S+A V
Sbjct: 446 PTTSTYTELMQHLFRSNEYQKCCELYDEMLERGVEIDSVAVMAIVAGHVRQDHISEAWEV 505
Query: 200 FRRLKLKGPYPDFKTYSMFITCLCEIGRSEEALQLIDEMLDCGIFPSTVNFRTIFHGLNR 21
F ++ KG P +K+YS+FI LC++ R++E ++++ +M +F F + + R
Sbjct: 506 FETMEDKGIKPTWKSYSIFIKELCKVLRTDEIIKVLGKMQASKMFICDEIFEWVISCMER 565
Query: 20 QGKQD 6
+G+ D
Sbjct: 566 KGEMD 570
>ref|XP_002333469.1| predicted protein [Populus trichocarpa] gi|222836989|gb|EEE75382.1|
predicted protein [Populus trichocarpa]
Length = 1048
Score = 188 bits (477), Expect = 4e-46
Identities = 88/131 (67%), Positives = 107/131 (81%)
Frame = -1
Query: 395 QAGVNPTVHVRTSLMVHYFKDKQIEKAMDIFKKMRAEGCEPTIVTYSALIRGYMNLGMVS 216
Q G+NPTVHV TSL+VH+F++K KA++IF+ M+ EGCEPTIVTYSALIRGYM+ V
Sbjct: 900 QVGINPTVHVYTSLIVHFFREKLASKALEIFESMKQEGCEPTIVTYSALIRGYMDTENVI 959
Query: 215 DARNVFRRLKLKGPYPDFKTYSMFITCLCEIGRSEEALQLIDEMLDCGIFPSTVNFRTIF 36
+A NVF LK KGP PDFKTYSMF++CLC G+SEEALQL+ +M+D GI PS VNFRT+F
Sbjct: 960 EAWNVFHSLKTKGPAPDFKTYSMFLSCLCRAGKSEEALQLLSDMVDNGIVPSNVNFRTVF 1019
Query: 35 HGLNRQGKQDL 3
GLNR+GKQ L
Sbjct: 1020 FGLNREGKQSL 1030
Score = 73.2 bits (178), Expect = 2e-11
Identities = 36/125 (28%), Positives = 68/125 (54%)
Frame = -1
Query: 380 PTVHVRTSLMVHYFKDKQIEKAMDIFKKMRAEGCEPTIVTYSALIRGYMNLGMVSDARNV 201
PT T LM H F+ + +K +++ +M G E V A++ G++ +S+A V
Sbjct: 446 PTTSTYTELMQHLFRSNEYQKCCELYDEMLERGVEIDSVAVMAIVAGHVRQDHISEAWEV 505
Query: 200 FRRLKLKGPYPDFKTYSMFITCLCEIGRSEEALQLIDEMLDCGIFPSTVNFRTIFHGLNR 21
F ++ KG P +K+YS+FI LC++ R++E ++++ +M +F F + + R
Sbjct: 506 FETMEDKGIKPTWKSYSIFIKELCKVSRTDEIIKVLGKMQASKMFICDEIFEWVISCMER 565
Query: 20 QGKQD 6
+G+ D
Sbjct: 566 KGEMD 570