BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00016099
         (1872 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB10338.1| hypothetical protein [Arabidopsis thaliana] gi|7...    97   1e-17
gb|AAD37019.2| putative non-LTR retrolelement reverse transcript...    94   1e-16
ref|NP_178215.1| zinc ion binding / nucleic acid binding [Arabid...    93   3e-16
dbj|BAB01940.1| non-LTR retrolelement reverse transcriptase-like...    93   3e-16
ref|XP_003604996.1| hypothetical protein MTR_4g022640 [Medicago ...    91   1e-15

>emb|CAB10338.1| hypothetical protein [Arabidopsis thaliana]
           gi|7268308|emb|CAB78602.1| hypothetical protein
           [Arabidopsis thaliana]
          Length = 655

 Score = 97.1 bits (240), Expect = 1e-17
 Identities = 65/247 (26%), Positives = 112/247 (45%), Gaps = 9/247 (3%)
 Frame = +3

Query: 225 DGYPMISFASQDMAKAIACLKNTLIIKFFFKKPSIDEIRISVRQTWGLKSEVIINVIDSK 404
           DG P+I+   + +       K  +++K   +  +I+ +   +R  W     + +  +  +
Sbjct: 73  DGEPVITIEKEVLDAMNGLYKQCMLVKILGRHTTIEVLSRKLRDLWRPTGGMSVLDLPRQ 132

Query: 405 HILLKFADEEDLVKALARKNPHIEGCRYKISRWSHQFDPTQDSA-LAPVWVEFYDLPYHL 581
             +++F  EED + AL      + G    +  WS +F+P +D     PVWV   +LP   
Sbjct: 133 FFMVRFEVEEDYMMALTGGPWRVLGSILMVQAWSPEFNPLRDVIETTPVWVRVANLPVTF 192

Query: 582 FNPGMLIPIASMIGKYLTIDQATLTMSTPLVARICVEVDLSIPLPAKLKITDPIYMDFWQ 761
           ++  +L+ IA+ +GK + +D  TL       AR+CVEV+L  PL   L +    Y     
Sbjct: 193 YHNEILLGIAAGLGKPIKVDLTTLRKERGRFARVCVEVNLKNPLKGTLVVNGERYF---- 248

Query: 762 EVVYDKLPRYCTYCSLQGHNASDCRKLNPNGSTTRG--------EVVHDTAHINHVGSST 917
            V Y+ L   C+ C + GH  ++C    P G TT+G        E+V   +  N  G + 
Sbjct: 249 -VSYEGLQTICSLCGIYGHTVNNC----PMGRTTQGSQRSEQGMEIVSSASTQNQDGFTE 303

Query: 918 HARKQKR 938
             R + R
Sbjct: 304 VRRARNR 310


>gb|AAD37019.2| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 855

 Score = 94.0 bits (232), Expect = 1e-16
 Identities = 63/264 (23%), Positives = 118/264 (44%), Gaps = 8/264 (3%)
 Frame = +3

Query: 189 EYFKSSYKIET---RDGYPMISFASQDMAKAIACLKNTLIIKFFFKKPSIDEIRISVRQT 359
           E+  S  ++E     DG  +I+   + +    +  K  +++K   +  SI  +   +R+ 
Sbjct: 18  EFVSSRMRVEFPNGADGESVITIGREVLDVMNSMWKQCMVVKVLGRNISIANLNRRLREM 77

Query: 360 WGLKSEVIINVIDSKHILLKFADEEDLVKALARKNPHIEGCRYKISRWSHQFDPTQDS-A 536
           W  +  + +  +  +  +++F  E++ + AL        G    +  WS +FDP +D   
Sbjct: 78  WKPQGAMFVVDLPCQFFMIRFEREDEYLSALTGGPWRAFGSYLLVQAWSPEFDPLRDEIT 137

Query: 537 LAPVWVEFYDLPYHLFNPGMLIPIASMIGKYLTIDQATLTMSTPLVARICVEVDLSIPLP 716
             P+WV   ++P  L++  +L+ IA  +GK + +D  TL +     AR+C+EVDL+ PL 
Sbjct: 138 TTPIWVRLMNIPLSLYHTSILMGIAGSLGKPVKVDMTTLHVERARFARMCIEVDLAKPLK 197

Query: 717 AKLKITDPIYMDFWQEVVYDKLPRYCTYCSLQGHNASDC----RKLNPNGSTTRGEVVHD 884
             L +    Y      V Y+ L   C+ C + GH    C     +   N ++    VV  
Sbjct: 198 GTLLLNGERYF-----VSYEGLANICSRCGMYGHLIHTCPQTIAEKEVNAASQSAPVVVS 252

Query: 885 TAHINHVGSSTHARKQKRILDKQM 956
            A   + G +   R +K+    Q+
Sbjct: 253 GAVPENDGFTVVRRSRKKAAPPQV 276


>ref|NP_178215.1| zinc ion binding / nucleic acid binding [Arabidopsis thaliana]
           gi|6598620|gb|AAF18653.1| hypothetical protein
           [Arabidopsis thaliana] gi|330250297|gb|AEC05391.1| zinc
           ion binding / nucleic acid binding protein [Arabidopsis
           thaliana]
          Length = 515

 Score = 92.8 bits (229), Expect = 3e-16
 Identities = 61/256 (23%), Positives = 113/256 (44%), Gaps = 1/256 (0%)
 Frame = +3

Query: 69  GPSPRMAASMALPMDGGAISSVAPSPNVACSCMDKDKPQLEYFKSSYKIETRDGYPMISF 248
           G  P    S A  + G A   +    +V      +++  LE+       +  D  P+I+ 
Sbjct: 12  GDPPDKLESWATKVKGSAGGGILKPEDVIDDEFVRERVGLEF------PDGEDEEPVITI 65

Query: 249 ASQDMAKAIACLKNTLIIKFFFKKPSIDEIRISVRQTWGLKSEVIINVIDSKHILLKFAD 428
             + +       K  +I+K    +  I  +   +R+ W     + +  +  +  +++F  
Sbjct: 66  GEEVLEAMNGLWKKCMIVKVLGSQIPISVLNRKLRELWKPSGVMTVMDLPRQFFMIRFEL 125

Query: 429 EEDLVKALARKNPHIEGCRYKISRWSHQFDPTQDSALA-PVWVEFYDLPYHLFNPGMLIP 605
           EE+ + AL      + G    +  WS +FDP +D  +  PVWV   ++PY+ ++  +L+ 
Sbjct: 126 EEEYMAALTGGPWRVLGNYLLVQDWSSRFDPLRDDIVTTPVWVRLSNIPYNYYHRCLLME 185

Query: 606 IASMIGKYLTIDQATLTMSTPLVARICVEVDLSIPLPAKLKITDPIYMDFWQEVVYDKLP 785
           IA  +G+ L +D  T+       AR+C+EV+L+ PL   + I    Y      V Y+ L 
Sbjct: 186 IARGLGRPLKVDMNTINFDKGRFARVCIEVNLAKPLKGTVLINGDRYF-----VAYEGLS 240

Query: 786 RYCTYCSLQGHNASDC 833
           + C+ C + GH    C
Sbjct: 241 KICSSCGIYGHLVHSC 256


>dbj|BAB01940.1| non-LTR retrolelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 591

 Score = 92.8 bits (229), Expect = 3e-16
 Identities = 53/206 (25%), Positives = 93/206 (45%), Gaps = 1/206 (0%)
 Frame = +3

Query: 225 DGYPMISFASQDMAKAIACLKNTLIIKFFFKKPSIDEIRISVRQTWGLKSEVIINVIDSK 404
           DG P+I+   + +       K  + +K   +K S+  +   +R+ W     + +  +   
Sbjct: 58  DGEPVITIGQEVIDAMNGLWKQCMFVKVLGRKVSLAAVSHRLREMWKPSGAMYVLDLPRH 117

Query: 405 HILLKFADEEDLVKALARKNPHIEGCRYKISRWSHQFDPTQDSALA-PVWVEFYDLPYHL 581
             +++F  EE+ + AL        G    +  WS +F+P +D  +  P+WV   D+P   
Sbjct: 118 FFMVRFEKEEEFLTALTGGPWRAFGSCLLVKAWSPEFNPLKDEIVTTPIWVRIADMPVSF 177

Query: 582 FNPGMLIPIASMIGKYLTIDQATLTMSTPLVARICVEVDLSIPLPAKLKITDPIYMDFWQ 761
           ++  +L+ +A  +G+ L +D   L       AR+CVEVDL  PL   L +    Y     
Sbjct: 178 YHKSILMSVAQGLGRPLKVDLTMLHFERGRFARVCVEVDLKRPLQGALLVNGDRYY---- 233

Query: 762 EVVYDKLPRYCTYCSLQGHNASDCRK 839
            V Y+ L   C+ C + GH   +C K
Sbjct: 234 -VAYEGLTNICSKCGIYGHLVHNCPK 258


>ref|XP_003604996.1| hypothetical protein MTR_4g022640 [Medicago truncatula]
           gi|355506051|gb|AES87193.1| hypothetical protein
           MTR_4g022640 [Medicago truncatula]
          Length = 513

 Score = 90.9 bits (224), Expect = 1e-15
 Identities = 73/275 (26%), Positives = 118/275 (42%), Gaps = 11/275 (4%)
 Frame = +3

Query: 141 SPNVACSCMDKDKPQLEYFKSSYKIETRDG---YPMISFASQDMAKAIACLKNTLIIKFF 311
           SPNV  +   +D  +    K   +IE  +G    P I        +     K+ L++K  
Sbjct: 38  SPNVIPTREKEDLIE----KKLVRIELENGNRLLPKIYLEPTTFQELCTPWKDALVVKLL 93

Query: 312 FKKPSIDEIRISVRQTWGLKSEVIINVIDSKHILLKFADEEDLVKALARKNPHIEGCRYK 491
            K    + ++  +++ W L+S   I   D+   ++KF  E D  K +      I      
Sbjct: 94  GKNLGYNTMKDRLQRIWKLQSGFEIMDNDNGFYMVKFDQEADKEKVVTGGPWMIFDHCLA 153

Query: 492 ISRWSHQF-DPTQDSALAPVWVEFYDLPYHLFNPGMLIPIASMIGKYLTIDQATLTMSTP 668
           ++ WS +F  P        VWV F  L    ++   L+ +AS IG+ + +D  TL +   
Sbjct: 154 VTHWSPEFASPEARVERTVVWVRFPGLNLVYYDESFLLAMASAIGRPIKVDTNTLKVERG 213

Query: 669 LVARICVEVDLSIPLPAKLKITDPIYMDFWQEVVYDKLPRYCTYCSLQGHNASDCR---- 836
             AR+CVE+DL++P+  K+ +        W ++ Y+ L   CT C   GH   +C     
Sbjct: 214 KFARVCVEIDLTVPVVGKIWVN-----GHWYKIQYEGLHLICTNCGCYGHLGRNCNQPTT 268

Query: 837 ---KLNPNGSTTRGEVVHDTAHINHVGSSTHARKQ 932
              K+NP    T     H  A  NH  +S HA +Q
Sbjct: 269 KIDKVNPQHHQTAANHHHTAA--NHQDNSQHAEQQ 301