BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00015974
         (372 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containi...    66   3e-09
emb|CBI29931.3| unnamed protein product [Vitis vinifera]               66   3e-09
ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    58   9e-07
ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containi...    58   9e-07

>ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 36/116 (31%)
 Frame = +3

Query: 132 NGILSVFLAKKLYCQVLALFPRVLAEGGICPNNATFATVLRVCS---------------- 263
           N ++S  LAKKL  QVL LF  ++ E  + P+ +TFA+VLR CS                
Sbjct: 80  NKVISGLLAKKLASQVLGLFSLMITEN-VTPDESTFASVLRACSGGKAPFQVTEQIHAKI 138

Query: 264 --------------------ESGGISLAQSIFEKLSSHNNISWVAMISGLSQNGHE 371
                               ++G + LA+ +FE+L   +++SWVAMISGLSQNG E
Sbjct: 139 IHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGRE 194


>emb|CBI29931.3| unnamed protein product [Vitis vinifera]
          Length = 838

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 36/116 (31%)
 Frame = +3

Query: 132 NGILSVFLAKKLYCQVLALFPRVLAEGGICPNNATFATVLRVCS---------------- 263
           N ++S  LAKKL  QVL LF  ++ E  + P+ +TFA+VLR CS                
Sbjct: 80  NKVISGLLAKKLASQVLGLFSLMITEN-VTPDESTFASVLRACSGGKAPFQVTEQIHAKI 138

Query: 264 --------------------ESGGISLAQSIFEKLSSHNNISWVAMISGLSQNGHE 371
                               ++G + LA+ +FE+L   +++SWVAMISGLSQNG E
Sbjct: 139 IHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGRE 194


>ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 41/116 (35%), Positives = 55/116 (47%), Gaps = 36/116 (31%)
 Frame = +3

Query: 132 NGILSVFLAKKLYCQVLALFPRVLAEGGICPNNATFATVLRVC----------------- 260
           N ++ VF+A+K   QV  LF R+LAEG I PN  TFA VL+ C                 
Sbjct: 128 NKMIHVFVAQKSNFQVFCLFRRMLAEG-ITPNGYTFAGVLKACVGGDIAFNYVKQVHSRT 186

Query: 261 -------------------SESGGISLAQSIFEKLSSHNNISWVAMISGLSQNGHE 371
                              S++G I  A+ +F  +   + ++WVAMISGLSQNG E
Sbjct: 187 FYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLE 242


>ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 41/116 (35%), Positives = 55/116 (47%), Gaps = 36/116 (31%)
 Frame = +3

Query: 132 NGILSVFLAKKLYCQVLALFPRVLAEGGICPNNATFATVLRVC----------------- 260
           N ++ VF+A+K   QV  LF R+LAEG I PN  TFA VL+ C                 
Sbjct: 128 NKMIHVFVAQKSNFQVFCLFRRMLAEG-ITPNGYTFAGVLKACVGGDIAFNYVKQVHSRT 186

Query: 261 -------------------SESGGISLAQSIFEKLSSHNNISWVAMISGLSQNGHE 371
                              S++G I  A+ +F  +   + ++WVAMISGLSQNG E
Sbjct: 187 FYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLE 242