BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00015910
         (570 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI25589.3| unnamed protein product [Vitis vinifera]              121   7e-26
ref|XP_002267199.1| PREDICTED: 116 kDa U5 small nuclear ribonucl...   121   7e-26
ref|XP_002438662.1| hypothetical protein SORBIDRAFT_10g023820 [S...   115   5e-24
dbj|BAJ96337.1| predicted protein [Hordeum vulgare subsp. vulgare]    114   9e-24
ref|NP_172112.1| U5 small nuclear ribonucleoprotein component [A...   113   2e-23

>emb|CBI25589.3| unnamed protein product [Vitis vinifera]
          Length = 931

 Score =  121 bits (304), Expect = 7e-26
 Identities = 56/69 (81%), Positives = 64/69 (92%)
 Frame = -1

Query: 207 MTVNKVTK*WVYQARYRVLVAKAPAGSWVLTEGVDASIMKTATLCNVNYDEDVYLFKPLL 28
           MTV +VTK WVYQARYR+ ++KAP GSWVL EGVDASIMKTATLCN++YDEDVY+F+PLL
Sbjct: 480 MTVKEVTKLWVYQARYRIPISKAPPGSWVLIEGVDASIMKTATLCNLDYDEDVYIFRPLL 539

Query: 27  FNTLPVVKT 1
           FNTLPVVKT
Sbjct: 540 FNTLPVVKT 548


>ref|XP_002267199.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component
           [Vitis vinifera] gi|147858113|emb|CAN81413.1|
           hypothetical protein VITISV_031170 [Vitis vinifera]
          Length = 988

 Score =  121 bits (304), Expect = 7e-26
 Identities = 56/69 (81%), Positives = 64/69 (92%)
 Frame = -1

Query: 207 MTVNKVTK*WVYQARYRVLVAKAPAGSWVLTEGVDASIMKTATLCNVNYDEDVYLFKPLL 28
           MTV +VTK WVYQARYR+ ++KAP GSWVL EGVDASIMKTATLCN++YDEDVY+F+PLL
Sbjct: 537 MTVKEVTKLWVYQARYRIPISKAPPGSWVLIEGVDASIMKTATLCNLDYDEDVYIFRPLL 596

Query: 27  FNTLPVVKT 1
           FNTLPVVKT
Sbjct: 597 FNTLPVVKT 605


>ref|XP_002438662.1| hypothetical protein SORBIDRAFT_10g023820 [Sorghum bicolor]
           gi|241916885|gb|EER90029.1| hypothetical protein
           SORBIDRAFT_10g023820 [Sorghum bicolor]
          Length = 995

 Score =  115 bits (288), Expect = 5e-24
 Identities = 54/68 (79%), Positives = 61/68 (89%)
 Frame = -1

Query: 207 MTVNKVTK*WVYQARYRVLVAKAPAGSWVLTEGVDASIMKTATLCNVNYDEDVYLFKPLL 28
           MTV +VTK WVYQARYRV ++KAPAGSWVL EGVDASIMKTAT+C +N DEDVY+F+PL 
Sbjct: 544 MTVKEVTKLWVYQARYRVAISKAPAGSWVLIEGVDASIMKTATICPMNIDEDVYIFRPLR 603

Query: 27  FNTLPVVK 4
           FNTLPVVK
Sbjct: 604 FNTLPVVK 611


>dbj|BAJ96337.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 452

 Score =  114 bits (286), Expect = 9e-24
 Identities = 54/68 (79%), Positives = 61/68 (89%)
 Frame = -1

Query: 207 MTVNKVTK*WVYQARYRVLVAKAPAGSWVLTEGVDASIMKTATLCNVNYDEDVYLFKPLL 28
           MTV +VTK WVYQARYRV ++KAPAGSWVL EGVDASIMKTAT+C +N DEDVY+F+PL 
Sbjct: 2   MTVKEVTKLWVYQARYRVPISKAPAGSWVLIEGVDASIMKTATICPMNMDEDVYIFRPLR 61

Query: 27  FNTLPVVK 4
           FNTLPVVK
Sbjct: 62  FNTLPVVK 69


>ref|NP_172112.1| U5 small nuclear ribonucleoprotein component [Arabidopsis thaliana]
           gi|30679607|ref|NP_849600.1| U5 small nuclear
           ribonucleoprotein component [Arabidopsis thaliana]
           gi|8844127|gb|AAF80219.1|AC025290_8 Contains similarity
           to an U5 snRNP-specific protein 116 kD from Homo sapiens
           gi|4759280 and contains elongation factor G C-terminus
           PF|00679 and is a member of the elongation factor Tu
           family PF|00009 [Arabidopsis thaliana]
           gi|110741512|dbj|BAE98706.1| elongation factor like
           protein [Arabidopsis thaliana]
           gi|332189840|gb|AEE27961.1| U5 small nuclear
           ribonucleoprotein component [Arabidopsis thaliana]
           gi|332189841|gb|AEE27962.1| U5 small nuclear
           ribonucleoprotein component [Arabidopsis thaliana]
          Length = 987

 Score =  113 bits (283), Expect = 2e-23
 Identities = 52/69 (75%), Positives = 60/69 (86%)
 Frame = -1

Query: 207 MTVNKVTK*WVYQARYRVLVAKAPAGSWVLTEGVDASIMKTATLCNVNYDEDVYLFKPLL 28
           MT+ +VTK W+YQARYR+ V+ AP GSWVL EGVDASIMKTATLCN +YDEDVY+F+ L 
Sbjct: 536 MTIKEVTKLWIYQARYRIPVSSAPPGSWVLIEGVDASIMKTATLCNASYDEDVYIFRALQ 595

Query: 27  FNTLPVVKT 1
           FNTLPVVKT
Sbjct: 596 FNTLPVVKT 604