BLASTX nr result
ID: Coptis23_contig00015905
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00015905
(1630 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002530895.1| dead box ATP-dependent RNA helicase, putativ... 384 e-104
ref|XP_004138675.1| PREDICTED: pre-mRNA-processing ATP-dependent... 345 2e-92
ref|XP_003519029.1| PREDICTED: pre-mRNA-processing ATP-dependent... 341 3e-91
ref|XP_003590262.1| DEAD-box ATP-dependent RNA helicase [Medicag... 335 2e-89
ref|XP_002315356.1| predicted protein [Populus trichocarpa] gi|2... 331 3e-88
>ref|XP_002530895.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223529548|gb|EEF31501.1| dead box ATP-dependent RNA
helicase, putative [Ricinus communis]
Length = 493
Score = 384 bits (985), Expect = e-104
Identities = 221/447 (49%), Positives = 293/447 (65%), Gaps = 2/447 (0%)
Frame = +1
Query: 55 DPQKDRSKNVLTSLFGKYER-NTVQKVETKGGVIRTQRRLHGSSDGPSKFLTACLKSIQN 231
DP +R + ++ K ++ NT +KV+ G + Q + SDGPSKF CL +I+
Sbjct: 62 DPFNERHGRMDINVKDKKKKVNTREKVQLNGNDLNHQEQACDYSDGPSKFFILCLNAIEK 121
Query: 232 TLL-DKSLSDRKSENSLLLNQWGAEFLTCSLLGTDILETTGGCSSEEQIAWMVSXXXXXX 408
L D + +D E LL+N WG EFL +G DILET+G + EQIAW+VS
Sbjct: 122 ALRHDGTYNDE--EKPLLVNPWGLEFLKFCSIGKDILETSGSSCTIEQIAWIVSIAADAI 179
Query: 409 XXKEKEGLSVPNPFLLILVPSKEKAIQVRLLCKPLKALGIHTVSLHTGASLDHQIDGLKC 588
KEKEGLS +PFLL LVPS+EKA +VR++CKPLK LG+HTVSLH GASLDHQI GLK
Sbjct: 180 ARKEKEGLSFSSPFLLFLVPSQEKAAKVRMVCKPLKDLGVHTVSLHAGASLDHQIRGLKS 239
Query: 589 CEPEFIISTPERLLELVSLKAIDISGLSFLVVDGLESFAISGLLDNVNSIRQATLGASLT 768
CEPEF++STPERL+EL+SLKAIDI+G+SFLVVDGL+S G L ++ SIRQ+ G T
Sbjct: 240 CEPEFLVSTPERLMELISLKAIDITGVSFLVVDGLDSLYQDGSLGSLKSIRQSISGNPHT 299
Query: 769 VVFCDSFGPLSTSAVQSLLGGPISRLSLSDSIASQSACISQCVHMCTSEEKPSKGIHVLN 948
V F + F A+Q+L G I+RLSLSDSI SQSACI Q + +CTSE+K L+
Sbjct: 300 VAFNNLFNHACVPALQNLFVGSINRLSLSDSICSQSACIFQTIEVCTSEQKK------LS 353
Query: 949 QECGKRTSSDYLKVLFVEEISSKARSSAAALIAEGYAMSNDATSDCSEVAYCKETTRVTV 1128
+ C R LK+LF+ E + KA S L + GY++S ++ + S V + V+V
Sbjct: 354 KLCSHR-----LKLLFIVENNKKAASLVKILKSNGYSVSTESNCEVSNVD-TRMKPVVSV 407
Query: 1129 TDLEHVHNRTDMGEFEIVVVINFPPEIDDYVEILTRMARQSVNGVLHCCFCQEDASLAGP 1308
+ EH+ + D+G +EI+++ NF ID+Y++ILTRMAR + +G+LH +EDA LAGP
Sbjct: 408 INAEHI-STADLGVYEIIILPNFVLSIDNYIQILTRMARHTTHGILHSFMTEEDALLAGP 466
Query: 1309 LIDILEQCEQNVPEFLRSYHNSVSMSE 1389
LI+ILEQC Q VPE LR+ H SMSE
Sbjct: 467 LIEILEQCGQAVPETLRTLHLRSSMSE 493
>ref|XP_004138675.1| PREDICTED: pre-mRNA-processing ATP-dependent RNA helicase prp5-like
[Cucumis sativus] gi|449517699|ref|XP_004165882.1|
PREDICTED: pre-mRNA-processing ATP-dependent RNA helicase
prp5-like [Cucumis sativus]
Length = 562
Score = 345 bits (886), Expect = 2e-92
Identities = 204/415 (49%), Positives = 263/415 (63%), Gaps = 7/415 (1%)
Frame = +1
Query: 139 KGGVIRTQRRLHGSSDGPSKFLTACLKSIQNTLLDKSLSDRKSENS-LLLNQWGAEFLTC 315
KG V Q SS PSKFL CL +I+N L S+ KS N L + WG EF C
Sbjct: 142 KGSVQGFQEEDSESSVAPSKFLILCLSAIENALYHDSI---KSINKPLFADTWGIEFWKC 198
Query: 316 SLLGTDILETTGGCSSEEQIAWMVSXXXXXXXXKEKEGLSVPNPFLLILVPSKEKAIQVR 495
G DIL+T+G S++E+IAW+VS KEKEG S +PFLL LVP++EKA Q+R
Sbjct: 199 YSSGKDILDTSGLSSTDEKIAWVVSSAADSIARKEKEGSSFSSPFLLFLVPNQEKATQIR 258
Query: 496 LLCKPLKALGIHTVSLHTGASLDHQIDGLKCCEPEFIISTPERLLELVSLKAIDISGLSF 675
+CKPLKALG+HTVS+H GASL HQI GLK CEPEF++STPERLLELV+++AIDISG+S
Sbjct: 259 SMCKPLKALGVHTVSIHPGASLGHQIQGLKSCEPEFLVSTPERLLELVAMQAIDISGVSL 318
Query: 676 LVVDGLESFAISGLLDNVNSIRQATLGASLTVVFCDSFGPLSTSAVQSLLGGPISRLSLS 855
LVVDGLES + G LD SIR++ T+VF DSF +QSLLGGPI RLSL+
Sbjct: 319 LVVDGLESLSRGGYLDMTQSIRKSISSKLHTIVFSDSFSCAYVPFIQSLLGGPIRRLSLN 378
Query: 856 DSIASQSACISQCVHMCTSE-EKPSKGIHVLNQECGKRTSSDYLKVLFVEEISSKARSSA 1032
S+A QSACI Q ++ TSE EK SK I L++ G + LK+LF+ A
Sbjct: 379 TSVACQSACIIQSINFYTSEKEKLSKVIQALDRANGSQIRPQPLKMLFILGKECNVHDLA 438
Query: 1033 AALIAEGYAMSNDATSDCSEV-----AYCKETTRVTVTDLEHVHNRTDMGEFEIVVVINF 1197
AAL +G+ + A E+ K V TD+E + N D+G +E + +++
Sbjct: 439 AALKFKGHDIVAGALCGVPEIKNNLKVDGKLRPVVAKTDIEQI-NTIDLGTYESIFILSA 497
Query: 1198 PPEIDDYVEILTRMARQSVNGVLHCCFCQEDASLAGPLIDILEQCEQNVPEFLRS 1362
P ID YVEILT MAR + NGVLH +E+AS+AG L++ILEQC Q+VP+ +R+
Sbjct: 498 FPPIDKYVEILTGMARHTNNGVLHSFISKEEASVAGSLVEILEQCGQDVPKTVRN 552
>ref|XP_003519029.1| PREDICTED: pre-mRNA-processing ATP-dependent RNA helicase prp5-like
[Glycine max]
Length = 563
Score = 341 bits (875), Expect = 3e-91
Identities = 206/469 (43%), Positives = 277/469 (59%), Gaps = 9/469 (1%)
Frame = +1
Query: 10 QKGDASRKGFSSRQRDPQKDR-----SKNVLTSLFGKYERNTVQKVETKGGVIRTQRRLH 174
+KG + + D Q++ S N+ ER + E + T++R
Sbjct: 100 KKGAVGGRKIARELNDLQRENESVTASNNLTHKCIINSERKNIDMTEM-AHLCGTKQRDC 158
Query: 175 GSSDGPSKFLTACLKSIQNTLLDKSLSDRKSENSLLLNQWGAEFLTCSLLGTDILETTGG 354
S+ PSKF+ CL SI+N L NS LN WG EFL C G D++ET+G
Sbjct: 159 DISEFPSKFIFWCLSSIENALRHGDAYTDGEGNSFFLNPWGLEFLKCYSTGKDLIETSGT 218
Query: 355 CSSEEQIAWMVSXXXXXXXXKEKEGLSVPNPFLLILVPSKEKAIQVRLLCKPLKALGIHT 534
++ EQIAWMVS KEKEGLS P PFLL LVPS+EK+ QVR +CKPLK++GIHT
Sbjct: 219 SATAEQIAWMVSGAADTFVRKEKEGLSFPGPFLLFLVPSQEKSTQVRTVCKPLKSVGIHT 278
Query: 535 VSLHTGASLDHQIDGLKCCEPEFIISTPERLLELVSLKAIDISGLSFLVVDGLESFAISG 714
VS+H GASLDHQI GLK CEPEF++STPERLLELVS KAIDISG+S LV+DGL + +G
Sbjct: 279 VSIHPGASLDHQIQGLKTCEPEFLVSTPERLLELVSTKAIDISGVSMLVIDGLNTICSAG 338
Query: 715 LLDNVNSIRQATLGASLTVVFCDSFGPLSTSAVQSLLGGPISRLSLSDSIASQSACISQC 894
D V SI+ G V+F D +S V+ LL G I R+SL++SI S S+ I Q
Sbjct: 339 HADTVKSIKNCISGNPRVVIFNDCVSHMSIPMVRYLLTGSICRVSLNNSINSLSSYIIQS 398
Query: 895 VHMCTSEE-KPSKGIHVLNQECGKRTSSDYLKVLFVEEISSKARSSAAALIAEGYAMSND 1071
V +CTSEE K I L+Q T + +L++ K L ++GY++S D
Sbjct: 399 VEVCTSEEDKVVMSIEALDQFQSNSTQNS--NMLYILSKDVKCHKLVKTLKSKGYSVSLD 456
Query: 1072 ATSDCSEVAYCKETTR---VTVTDLEHVHNRTDMGEFEIVVVINFPPEIDDYVEILTRMA 1242
SD + + ++ R V++ DL + + TD+G +++VV+ +F P ID YV ILT+MA
Sbjct: 457 --SDAANINDRVDSDRRAAVSLIDLVQI-STTDIGTYDVVVLPSFVPSIDTYVHILTKMA 513
Query: 1243 RQSVNGVLHCCFCQEDASLAGPLIDILEQCEQNVPEFLRSYHNSVSMSE 1389
R SVNGVLH + D LA PLI +LEQC Q VP+ L+ +++ +M E
Sbjct: 514 RTSVNGVLHSFLTKRDTELAAPLIAVLEQCGQEVPQTLQDLNHTSNMLE 562
>ref|XP_003590262.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355479310|gb|AES60513.1| DEAD-box ATP-dependent RNA
helicase [Medicago truncatula]
Length = 532
Score = 335 bits (859), Expect = 2e-89
Identities = 195/401 (48%), Positives = 252/401 (62%), Gaps = 3/401 (0%)
Frame = +1
Query: 181 SDGPSKFLTACLKSIQNTLLDKSLSDRKSENSLLLNQWGAEFLTCSLLGTDILETTGGCS 360
SD PSKF+ CL +I+N L NS LN WG EF G D+++T G +
Sbjct: 128 SDFPSKFVFWCLSAIENALRHDDAYTDGEGNSFFLNPWGLEFSKHFSTGKDLIDTGGTFA 187
Query: 361 SEEQIAWMVSXXXXXXXXKEKEGLSVPNPFLLILVPSKEKAIQVRLLCKPLKALGIHTVS 540
+ EQIAWMVS KEK+GLS+ PFLL LVPS++KA QVR +CKPLK++GIHTVS
Sbjct: 188 TTEQIAWMVSAAADIFVRKEKQGLSLDTPFLLFLVPSEKKAGQVRTVCKPLKSVGIHTVS 247
Query: 541 LHTGASLDHQIDGLKCCEPEFIISTPERLLELVSLKAIDISGLSFLVVDGLESFAISGLL 720
+H GASLDHQI GLK CEPEF+ISTPERLLELVSLKAIDISG+S LV+DG ++ +G
Sbjct: 248 VHPGASLDHQIQGLKSCEPEFLISTPERLLELVSLKAIDISGISMLVIDGFDAICKAGHA 307
Query: 721 DNVNSIRQATLGASLTVVFCDSFGPLSTSAVQSLLGGPISRLSLSDSIASQSACISQCVH 900
D + SI++ G VVF DSF S V+ LL GPI R+S+++SIAS S+CI Q V
Sbjct: 308 DAIKSIKKFISGNPSLVVFNDSFNHTSIPVVRHLLTGPICRISINNSIASLSSCIVQSVQ 367
Query: 901 MCTS-EEKPSKGIHVLNQECGKRTSSDYLKVLFVEEISSKARSSAAALIAEGYAMSNDAT 1077
+CTS E+K K I VL Q +T S L L++ K L + G + S D
Sbjct: 368 VCTSDEDKLVKSIEVLRQFRSSQTHSSNL--LYILRKDVKCHKLVKTLKSMGCSTSLD-- 423
Query: 1078 SDCSEVAYCKETTR--VTVTDLEHVHNRTDMGEFEIVVVINFPPEIDDYVEILTRMARQS 1251
SD + + ++ R VT+ DLE + + D+G ++++V+ + P +D Y ILT MARQS
Sbjct: 424 SDAATINDSVDSNRRLVTMIDLEDI-STLDIGMYDVIVLPSLVPSMDTYEHILTNMARQS 482
Query: 1252 VNGVLHCCFCQEDASLAGPLIDILEQCEQNVPEFLRSYHNS 1374
VNG+LH + D AGPLI ILEQC Q VPE L+ H +
Sbjct: 483 VNGILHGFLTKSDTEHAGPLISILEQCGQEVPETLKDLHQA 523
>ref|XP_002315356.1| predicted protein [Populus trichocarpa] gi|222864396|gb|EEF01527.1|
predicted protein [Populus trichocarpa]
Length = 491
Score = 331 bits (849), Expect = 3e-88
Identities = 200/448 (44%), Positives = 271/448 (60%), Gaps = 3/448 (0%)
Frame = +1
Query: 55 DPQKDRSKNVLTSLFGKYERNTVQKVETKGGVIRTQRR---LHGSSDGPSKFLTACLKSI 225
DP DR+ GK E QK ETK + + D PSKFL L I
Sbjct: 61 DPFNDRN--------GKLE---FQKKETKNKPSARKNEKAFARENMDCPSKFLMYSLNEI 109
Query: 226 QNTLLDKSLSDRKSENSLLLNQWGAEFLTCSLLGTDILETTGGCSSEEQIAWMVSXXXXX 405
+ L + + + SL ++ WG EFL C G DILET+G + EQIAW+VS
Sbjct: 110 EKALRHEGTYNDDEDESLFVSPWGVEFLKCYSTGKDILETSGSSCTTEQIAWVVSMAADI 169
Query: 406 XXXKEKEGLSVPNPFLLILVPSKEKAIQVRLLCKPLKALGIHTVSLHTGASLDHQIDGLK 585
KE+E LSVP+P L LVPS+E+A++VR++CKPLKALGIHTVS+H G+S+DHQI GL
Sbjct: 170 IVRKEEEDLSVPSPSFLFLVPSQEEAVKVRMVCKPLKALGIHTVSVHPGSSIDHQIHGLA 229
Query: 586 CCEPEFIISTPERLLELVSLKAIDISGLSFLVVDGLESFAISGLLDNVNSIRQATLGASL 765
CEPEF++STP+RLLELVSLKAIDISG+SFLVVDG+ES G L+ + SIRQ+ G+
Sbjct: 230 SCEPEFLVSTPDRLLELVSLKAIDISGVSFLVVDGVESLYNGGCLNALKSIRQSISGSLR 289
Query: 766 TVVFCDSFGPLSTSAVQSLLGGPISRLSLSDSIASQSACISQCVHMCTSEEKPSKGIHVL 945
TVVF + F +Q+LL G I RLS+ SI QSACI Q +++CTSEE+ +L
Sbjct: 290 TVVFNNFFSGACVPVLQNLLLGSICRLSIDQSIPIQSACIVQTINLCTSEEE-----RLL 344
Query: 946 NQECGKRTSSDYLKVLFVEEISSKARSSAAALIAEGYAMSNDATSDCSEVAYCKETTRVT 1125
+ + +L VL+V + + + L GY +S ++ S + V+
Sbjct: 345 KVCTSQYLDNCFLLVLYVVGNDNSSFNLVKMLEINGYTVSVESNRSISNDDNRMKPV-VS 403
Query: 1126 VTDLEHVHNRTDMGEFEIVVVINFPPEIDDYVEILTRMARQSVNGVLHCCFCQEDASLAG 1305
V ++E + + T++ +E V++ NF P ID+YV+ILTRMAR S+ G H +EDA +A
Sbjct: 404 VINVERI-STTNLAFYETVILPNFGPSIDNYVQILTRMARHSIKGNFHSFLTKEDALIAR 462
Query: 1306 PLIDILEQCEQNVPEFLRSYHNSVSMSE 1389
PL+ ILEQC Q VPE LR+ H + S+ E
Sbjct: 463 PLMGILEQCGQAVPEALRNLHLTSSVPE 490