BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00015893
         (570 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272784.1| PREDICTED: pentatricopeptide repeat-containi...   134   1e-29
emb|CAN75708.1| hypothetical protein VITISV_031421 [Vitis vinifera]   134   1e-29
ref|XP_003532952.1| PREDICTED: pentatricopeptide repeat-containi...   126   3e-27
ref|XP_002319373.1| predicted protein [Populus trichocarpa] gi|2...   123   2e-26
ref|XP_002517971.1| pentatricopeptide repeat-containing protein,...   122   3e-26

>ref|XP_002272784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73710-like
            [Vitis vinifera]
          Length = 1008

 Score =  134 bits (337), Expect = 1e-29
 Identities = 65/85 (76%), Positives = 74/85 (87%)
 Frame = +3

Query: 3    IFMRMQDEGLEPDLVTYIYLVGCYGKAGMVGGIKRIYSKLTYEEIEPNESLFTAIINAYK 182
            +FM+MQDEGLEPDLVTYI L GCYGKAGM+ G+KRIYS+L Y EIEPNESLF AII+AY+
Sbjct: 923  MFMKMQDEGLEPDLVTYINLAGCYGKAGMLEGLKRIYSQLKYREIEPNESLFKAIIDAYR 982

Query: 183  DANRNDLAELVSQEMRFAIDTQDLP 257
             A R+DLAELVSQEM+FA DT  LP
Sbjct: 983  SAKRHDLAELVSQEMKFAFDTTMLP 1007


>emb|CAN75708.1| hypothetical protein VITISV_031421 [Vitis vinifera]
          Length = 1313

 Score =  134 bits (337), Expect = 1e-29
 Identities = 65/85 (76%), Positives = 74/85 (87%)
 Frame = +3

Query: 3    IFMRMQDEGLEPDLVTYIYLVGCYGKAGMVGGIKRIYSKLTYEEIEPNESLFTAIINAYK 182
            +FM+MQDEGLEPDLVTYI L GCYGKAGM+ G+KRIYS+L Y EIEPNESLF AII+AY+
Sbjct: 1228 MFMKMQDEGLEPDLVTYINLAGCYGKAGMLEGLKRIYSQLKYREIEPNESLFKAIIDAYR 1287

Query: 183  DANRNDLAELVSQEMRFAIDTQDLP 257
             A R+DLAELVSQEM+FA DT  LP
Sbjct: 1288 SAKRHDLAELVSQEMKFAFDTTMLP 1312


>ref|XP_003532952.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73710-like
            [Glycine max]
          Length = 963

 Score =  126 bits (316), Expect = 3e-27
 Identities = 62/92 (67%), Positives = 76/92 (82%)
 Frame = +3

Query: 3    IFMRMQDEGLEPDLVTYIYLVGCYGKAGMVGGIKRIYSKLTYEEIEPNESLFTAIINAYK 182
            I+M+M+DE L PDLVTYIYLVGCYGKAGMV G+K+IYS+L Y EIE NESLF AII+AYK
Sbjct: 850  IYMKMRDEHLGPDLVTYIYLVGCYGKAGMVEGVKQIYSQLEYGEIESNESLFKAIIDAYK 909

Query: 183  DANRNDLAELVSQEMRFAIDTQDLPESETEED 278
              NR DLAELVSQEM+F  ++++  E E+E +
Sbjct: 910  ICNRKDLAELVSQEMKFTFNSKEHSEIESETE 941


>ref|XP_002319373.1| predicted protein [Populus trichocarpa] gi|222857749|gb|EEE95296.1|
           predicted protein [Populus trichocarpa]
          Length = 810

 Score =  123 bits (309), Expect = 2e-26
 Identities = 59/89 (66%), Positives = 74/89 (83%)
 Frame = +3

Query: 6   FMRMQDEGLEPDLVTYIYLVGCYGKAGMVGGIKRIYSKLTYEEIEPNESLFTAIINAYKD 185
           FM+ QDEGLEPDLVT I LV CYGKAGMV G+KRIYS+L Y EI+PN+SL  A+++AYK+
Sbjct: 712 FMKRQDEGLEPDLVTSINLVHCYGKAGMVEGVKRIYSQLKYGEIKPNDSLVKAVVDAYKN 771

Query: 186 ANRNDLAELVSQEMRFAIDTQDLPESETE 272
           ANR+DLAELV+Q++RF  D+Q   +SE E
Sbjct: 772 ANRHDLAELVNQDIRFGFDSQQYSDSEIE 800


>ref|XP_002517971.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223542953|gb|EEF44489.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 1029

 Score =  122 bits (307), Expect = 3e-26
 Identities = 56/96 (58%), Positives = 77/96 (80%)
 Frame = +3

Query: 6    FMRMQDEGLEPDLVTYIYLVGCYGKAGMVGGIKRIYSKLTYEEIEPNESLFTAIINAYKD 185
            FM+MQDEGLEPDLVT I LV CYGKAGMV G+KRIYS+L Y +I+P++S F A+++AY+D
Sbjct: 922  FMKMQDEGLEPDLVTSICLVYCYGKAGMVEGVKRIYSQLKYRDIKPSDSAFKAVVDAYED 981

Query: 186  ANRNDLAELVSQEMRFAIDTQDLPESETEEDDFSDY 293
            ANR+DLAELV+QE+R   D+    +S+++   +S +
Sbjct: 982  ANRHDLAELVNQELRLGFDSPRFSDSDSDSQQYSHF 1017