BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00015776
         (1500 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269420.2| PREDICTED: pentatricopeptide repeat-containi...   615   e-174
ref|XP_003532287.1| PREDICTED: pentatricopeptide repeat-containi...   582   e-163
ref|XP_002529915.1| pentatricopeptide repeat-containing protein,...   570   e-160
ref|XP_002303045.1| predicted protein [Populus trichocarpa] gi|2...   569   e-160
ref|NP_199684.2| pentatricopeptide repeat-containing protein [Ar...   565   e-158

>ref|XP_002269420.2| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
            chloroplastic-like [Vitis vinifera]
            gi|297744374|emb|CBI37344.3| unnamed protein product
            [Vitis vinifera]
          Length = 497

 Score =  615 bits (1586), Expect = e-174
 Identities = 298/387 (77%), Positives = 343/387 (88%)
 Frame = +1

Query: 1    HERVTALRWESALMVFELLQEQLWYRPNPGVYIKLIVMLGKCKQPEKANDLFESMIEEGC 180
            HER+TALRWESAL VFELL+EQLWYRPN G+YIKLIVMLGKCKQPEKA+ LF +MI+EGC
Sbjct: 110  HERITALRWESALKVFELLREQLWYRPNSGIYIKLIVMLGKCKQPEKAHALFLAMIDEGC 169

Query: 181  IVNHESYTALVSAYSRSGLFDRAFSLLDQMKNTRGCEPDVYTYTILIKSCLQVFAFDRVQ 360
            +VNHE+YTAL+SAYSRSGLFD+AFSLL++MKNT  C+PDV+TY++LIKSCLQV AFD+V 
Sbjct: 170  VVNHEAYTALLSAYSRSGLFDKAFSLLEKMKNTPDCQPDVHTYSVLIKSCLQVVAFDKVP 229

Query: 361  TLLSDMADQRIKPSTVTYNTLIDAYGRAGRYGEMESTLMEMLRERECEPDVWTMNATLRA 540
             LLSDMA+Q IKP+TVTYNTLIDAYG+A R+ EMESTL+EMLRE +CEPDVWTMN+TLRA
Sbjct: 230  VLLSDMANQGIKPNTVTYNTLIDAYGKAKRFAEMESTLLEMLREGKCEPDVWTMNSTLRA 289

Query: 541  FGGSGQIETMETCYEKFQNSGIRPDIKTFNILLDSYGKAGSYEKMSAVMEYMQKYYFSWT 720
            FG SGQIETME CYEKFQ++GI P+IKTFNILLDSYGKA  YEKMSAVMEYMQKY+FSWT
Sbjct: 290  FGSSGQIETMEKCYEKFQSAGIEPNIKTFNILLDSYGKAEKYEKMSAVMEYMQKYHFSWT 349

Query: 721  IVTYNVVIDAFGRAGDLKQMEYLFRLMRTEKIKPNCITLSSLVKAYGRAGSAEKIGSVLR 900
            IVTYNVVIDAFGRAGDLKQMEYLFRLMR+E+IKP+C+TL SLV+AYGRAG AEKIG VLR
Sbjct: 350  IVTYNVVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGRAGKAEKIGGVLR 409

Query: 901  FIENSDVTLDTAFFNCLLDAYGRMGCLAEMKEASEMMIERGCKADRITYSTMIKAYASNG 1080
            FIENSDV LD  FFNCL+DAYGR+GC AEMK   EMM ++GCK D+ITY TMIKAY   G
Sbjct: 410  FIENSDVMLDIVFFNCLVDAYGRLGCFAEMKGVLEMMKKKGCKPDKITYRTMIKAYKIGG 469

Query: 1081 ITSRAKELEDMISKGKRTQEKLG*LDF 1161
            +TS AKEL+ ++     T+ ++G  DF
Sbjct: 470  MTSCAKELQGLMRMPDETRLEMGKPDF 496


>ref|XP_003532287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
            chloroplastic-like [Glycine max]
          Length = 515

 Score =  582 bits (1499), Expect = e-163
 Identities = 276/387 (71%), Positives = 333/387 (86%)
 Frame = +1

Query: 1    HERVTALRWESALMVFELLQEQLWYRPNPGVYIKLIVMLGKCKQPEKANDLFESMIEEGC 180
            HERVTALRWESAL VFELL EQ+WY+P+ GVYIKLIVMLGKCKQPEKA++LF++M++EGC
Sbjct: 129  HERVTALRWESALKVFELLHEQIWYKPDTGVYIKLIVMLGKCKQPEKAHELFQAMVDEGC 188

Query: 181  IVNHESYTALVSAYSRSGLFDRAFSLLDQMKNTRGCEPDVYTYTILIKSCLQVFAFDRVQ 360
            +++ ESYTAL+SAYSRSGL D+AFSLL++MKNT GC+PDV TY+IL+KSCLQVFAFD++Q
Sbjct: 189  VLDCESYTALLSAYSRSGLLDKAFSLLEEMKNTPGCQPDVQTYSILLKSCLQVFAFDKIQ 248

Query: 361  TLLSDMADQRIKPSTVTYNTLIDAYGRAGRYGEMESTLMEMLRERECEPDVWTMNATLRA 540
            +LLSDM ++ IKP+TVTYNTLIDAYG+A ++ EMES L+EML +R C+PDVWTMN+TLRA
Sbjct: 249  SLLSDMTNRGIKPNTVTYNTLIDAYGKARKFSEMESILVEMLADRYCQPDVWTMNSTLRA 308

Query: 541  FGGSGQIETMETCYEKFQNSGIRPDIKTFNILLDSYGKAGSYEKMSAVMEYMQKYYFSWT 720
            FG  GQIETME CYEKFQN+GI+P+++TFNILLDSYGKA  Y+KMSAVMEYMQKY++SWT
Sbjct: 309  FGNIGQIETMEKCYEKFQNAGIQPNVQTFNILLDSYGKAQDYKKMSAVMEYMQKYHYSWT 368

Query: 721  IVTYNVVIDAFGRAGDLKQMEYLFRLMRTEKIKPNCITLSSLVKAYGRAGSAEKIGSVLR 900
            IVT+N+VIDAFG+AGDLKQMEYLFRLMR+E+IKP+C+TL SLV+AY RAG  EKI  VLR
Sbjct: 369  IVTFNIVIDAFGKAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYARAGKPEKISGVLR 428

Query: 901  FIENSDVTLDTAFFNCLLDAYGRMGCLAEMKEASEMMIERGCKADRITYSTMIKAYASNG 1080
            F+ENSDV LDT FFNCL+DAY R+GCLAEMK   EMM + GCK D +TY TMIK Y   G
Sbjct: 429  FVENSDVLLDTVFFNCLVDAYARLGCLAEMKGVLEMMKQNGCKPDIVTYRTMIKTYTYKG 488

Query: 1081 ITSRAKELEDMISKGKRTQEKLG*LDF 1161
            + S AKEL +++    R   K    DF
Sbjct: 489  MDSHAKELRELLPTVNRPPLKRDKPDF 515


>ref|XP_002529915.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223530592|gb|EEF32469.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 636

 Score =  570 bits (1468), Expect = e-160
 Identities = 270/377 (71%), Positives = 325/377 (86%)
 Frame = +1

Query: 1    HERVTALRWESALMVFELLQEQLWYRPNPGVYIKLIVMLGKCKQPEKANDLFESMIEEGC 180
            HER+TALRWESAL VFELL+EQ+WYRP  G+YIKLIVMLGKCKQPEKA++LF++MI EGC
Sbjct: 127  HERITALRWESALKVFELLREQIWYRPYSGMYIKLIVMLGKCKQPEKAHELFQAMIHEGC 186

Query: 181  IVNHESYTALVSAYSRSGLFDRAFSLLDQMKNTRGCEPDVYTYTILIKSCLQVFAFDRVQ 360
             V+HESYTAL+SAY RSGL D+AFSLL++MK    C+PDV+TY+ILIKSC+QVFAFD+ +
Sbjct: 187  DVSHESYTALLSAYGRSGLLDKAFSLLEEMKRNPDCQPDVHTYSILIKSCVQVFAFDKAK 246

Query: 361  TLLSDMADQRIKPSTVTYNTLIDAYGRAGRYGEMESTLMEMLRERECEPDVWTMNATLRA 540
            TLLS+M    I P+T+TYNTLIDAYG+A  + EME+TL++ML ++ CEPDVWTMN+TLRA
Sbjct: 247  TLLSNMESLGISPNTITYNTLIDAYGKAKMFEEMEATLVKMLSQQNCEPDVWTMNSTLRA 306

Query: 541  FGGSGQIETMETCYEKFQNSGIRPDIKTFNILLDSYGKAGSYEKMSAVMEYMQKYYFSWT 720
            FG SGQIETME CYEKFQ +GI P I TFN+LLDSYGKAG Y+KMSAVMEYMQKY++SWT
Sbjct: 307  FGISGQIETMEKCYEKFQGAGIEPSIMTFNVLLDSYGKAGDYKKMSAVMEYMQKYHYSWT 366

Query: 721  IVTYNVVIDAFGRAGDLKQMEYLFRLMRTEKIKPNCITLSSLVKAYGRAGSAEKIGSVLR 900
            I+TYN+VIDAFGRAGDLKQMEYLFRLMR+E+IKP+C+TL SLV+AYG+A   EKI  VLR
Sbjct: 367  IITYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGQAEKPEKIEGVLR 426

Query: 901  FIENSDVTLDTAFFNCLLDAYGRMGCLAEMKEASEMMIERGCKADRITYSTMIKAYASNG 1080
            FIENSD+TLDT FFNCL+DAYGRMGC AEMK    +M ++G + D+ITY TMIKAY+S G
Sbjct: 427  FIENSDITLDTVFFNCLVDAYGRMGCFAEMKGVLILMEQKGYRPDKITYRTMIKAYSSKG 486

Query: 1081 ITSRAKELEDMISKGKR 1131
            +T   KEL+D+ + G R
Sbjct: 487  MTKHVKELQDLEAAGVR 503


>ref|XP_002303045.1| predicted protein [Populus trichocarpa] gi|222844771|gb|EEE82318.1|
            predicted protein [Populus trichocarpa]
          Length = 388

 Score =  569 bits (1467), Expect = e-160
 Identities = 267/366 (72%), Positives = 324/366 (88%)
 Frame = +1

Query: 40   MVFELLQEQLWYRPNPGVYIKLIVMLGKCKQPEKANDLFESMIEEGCIVNHESYTALVSA 219
            +VFELL+EQLWYRP  G+Y+KLIVMLGKCKQP+KA+ LF++MI+EGC V HESYTAL+SA
Sbjct: 15   LVFELLREQLWYRPYAGMYVKLIVMLGKCKQPDKAHQLFQAMIDEGCAVTHESYTALLSA 74

Query: 220  YSRSGLFDRAFSLLDQMKNTRGCEPDVYTYTILIKSCLQVFAFDRVQTLLSDMADQRIKP 399
            Y RSGLFD+AFS++++MKNT  C PDV+TY+ILIKSCLQVFAFD+VQ LLSDM    I+P
Sbjct: 75   YGRSGLFDKAFSIMEEMKNTPDCRPDVHTYSILIKSCLQVFAFDKVQVLLSDMESLGIRP 134

Query: 400  STVTYNTLIDAYGRAGRYGEMESTLMEMLRERECEPDVWTMNATLRAFGGSGQIETMETC 579
            +TVTYNT+IDAYG+A  + EME+TLMEML +++CEPDVWTMN+T+RAFGGSGQ+E ME C
Sbjct: 135  NTVTYNTVIDAYGKAKMFAEMEATLMEMLSQQDCEPDVWTMNSTIRAFGGSGQMEMMENC 194

Query: 580  YEKFQNSGIRPDIKTFNILLDSYGKAGSYEKMSAVMEYMQKYYFSWTIVTYNVVIDAFGR 759
            YEKFQ++GI P+IKTFNILLDSYGKAG+Y+KMSAVMEYMQ+Y++SWTIVTYNVVIDAFGR
Sbjct: 195  YEKFQSAGIEPNIKTFNILLDSYGKAGNYQKMSAVMEYMQRYHYSWTIVTYNVVIDAFGR 254

Query: 760  AGDLKQMEYLFRLMRTEKIKPNCITLSSLVKAYGRAGSAEKIGSVLRFIENSDVTLDTAF 939
            AGDLKQMEYLFRLMR+E+IKP+C+TL SLV+AY  AG  EKIGSVLRFIENSDVTLDT F
Sbjct: 255  AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYREAGKPEKIGSVLRFIENSDVTLDTVF 314

Query: 940  FNCLLDAYGRMGCLAEMKEASEMMIERGCKADRITYSTMIKAYASNGITSRAKELEDMIS 1119
            FNCL+DAYGR+ C AEMKE  E+M E+GCK D++TY TMIKAY+  G+TS AK+L +++ 
Sbjct: 315  FNCLVDAYGRLECFAEMKEVLELMEEKGCKPDKVTYRTMIKAYSIKGMTSHAKKLRNLLG 374

Query: 1120 KGKRTQ 1137
              + T+
Sbjct: 375  SVEVTR 380


>ref|NP_199684.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|223635750|sp|Q9FKC3.2|PP424_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At5g48730, chloroplastic; Flags: Precursor
            gi|332008334|gb|AED95717.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 508

 Score =  565 bits (1456), Expect = e-158
 Identities = 268/372 (72%), Positives = 325/372 (87%)
 Frame = +1

Query: 1    HERVTALRWESALMVFELLQEQLWYRPNPGVYIKLIVMLGKCKQPEKANDLFESMIEEGC 180
            HER+TALRWESA+ VFELL+EQLWY+PN G+Y+KLIVMLGKCKQPEKA++LF+ MI EGC
Sbjct: 122  HERITALRWESAIQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGC 181

Query: 181  IVNHESYTALVSAYSRSGLFDRAFSLLDQMKNTRGCEPDVYTYTILIKSCLQVFAFDRVQ 360
            +VNHE YTALVSAYSRSG FD AF+LL++MK++  C+PDV+TY+ILIKS LQVFAFD+VQ
Sbjct: 182  VVNHEVYTALVSAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQ 241

Query: 361  TLLSDMADQRIKPSTVTYNTLIDAYGRAGRYGEMESTLMEMLRERECEPDVWTMNATLRA 540
             LLSDM  Q I+P+T+TYNTLIDAYG+A  + EMESTL++ML E +C+PD WTMN+TLRA
Sbjct: 242  DLLSDMRRQGIRPNTITYNTLIDAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRA 301

Query: 541  FGGSGQIETMETCYEKFQNSGIRPDIKTFNILLDSYGKAGSYEKMSAVMEYMQKYYFSWT 720
            FGG+GQIE ME CYEKFQ+SGI P+I+TFNILLDSYGK+G+Y+KMSAVMEYMQKY++SWT
Sbjct: 302  FGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWT 361

Query: 721  IVTYNVVIDAFGRAGDLKQMEYLFRLMRTEKIKPNCITLSSLVKAYGRAGSAEKIGSVLR 900
            IVTYNVVIDAFGRAGDLKQMEYLFRLM++E+I P+C+TL SLV+AYGRA  A+KIG VLR
Sbjct: 362  IVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCVTLCSLVRAYGRASKADKIGGVLR 421

Query: 901  FIENSDVTLDTAFFNCLLDAYGRMGCLAEMKEASEMMIERGCKADRITYSTMIKAYASNG 1080
            FIENSD+ LD  FFNCL+DAYGRM   AEMK   E+M ++G K D+ITY TM+KAY  +G
Sbjct: 422  FIENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAYRISG 481

Query: 1081 ITSRAKELEDMI 1116
            +T+  KEL  ++
Sbjct: 482  MTTHVKELHGVV 493