BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00015767
         (1612 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containi...   344   4e-92
gb|AER41645.1| CRR4 [Oryza punctata]                                  281   3e-73
gb|AER41579.1| CRR4 [Oryza brachyantha]                               280   6e-73
dbj|BAC10060.1| selenium-binding protein-like protein [Oryza sat...   278   4e-72
ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containi...   266   1e-68

>ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
            chloroplastic-like [Vitis vinifera]
          Length = 658

 Score =  344 bits (882), Expect = 4e-92
 Identities = 166/256 (64%), Positives = 206/256 (80%)
 Frame = -1

Query: 1612 GALEQGKWIDSYMKKNGYNLSNVLGNALIDMFAKCGDIEFAIEVFHCITDRCIITWTTMV 1433
            G+LE GKWI+SY+KKN  +LS  LGNALIDMFAKCGD+E A EVFH ++ RCIITWTTMV
Sbjct: 315  GSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMSKRCIITWTTMV 374

Query: 1432 SGLALNGNFREALSLFDTMCREKIEPDYVIFTAVLSACSHGGLVEEGQRVFKQMVMQFGV 1253
            SGLA+NG  REA++LFD MC E  +PD VIF AVLSAC+HGGLVEEG+RVF QMV +FG+
Sbjct: 375  SGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVLSACTHGGLVEEGKRVFDQMVQEFGI 434

Query: 1252 EPQIEHYGCMVDLLSRAGMVEEAFRFIMSMGMEPNAIIWATLLGFCKVYEKQELAEAVTQ 1073
            +P+IEHYGCMVDLL RAG +EEA RF   M ++PNA+IWATLL  CK++   +L ++VT+
Sbjct: 435  KPRIEHYGCMVDLLGRAGKLEEAVRFTARMHLKPNAVIWATLLFCCKIHGNGDLLKSVTE 494

Query: 1072 KILSLEPSNPGYISMISNLNASVGQWDFVTSVRNAMRKEGMEKVPGCSAIQIEDTVHEFL 893
            KI+  EPSNP Y++++SNL+AS G+W+ V S R AMR++ MEKVPGCS+IQ+ + VHEFL
Sbjct: 495  KIMDQEPSNPSYLTLVSNLSASFGRWEDVLSFRVAMRQQRMEKVPGCSSIQVGNRVHEFL 554

Query: 892  VMDKTHEQRKEIYITL 845
              D  H QRKEIY  L
Sbjct: 555  AKDTRHVQRKEIYRAL 570



 Score = 58.5 bits (140), Expect = 5e-06
 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 1/163 (0%)
 Frame = -1

Query: 1609 ALEQGKWIDSYMKKNGYNLSNVLGNALIDMFAKCGD-IEFAIEVFHCITDRCIITWTTMV 1433
            ALE G+ I   + K G+  S  + N+L+  +A C + +  A  VF  + +R +I+W +M+
Sbjct: 89   ALEDGRVIHGEILKLGFGSSVFVQNSLLGFYANCSENLGSAYRVFEEMPERDVISWNSMI 148

Query: 1432 SGLALNGNFREALSLFDTMCREKIEPDYVIFTAVLSACSHGGLVEEGQRVFKQMVMQFGV 1253
            S     G  + A+ L D M    I    V + +V+   S  G +E    VF+QM ++  V
Sbjct: 149  SAYMTRGEIQSAIGLLDKMPERNI----VTWNSVVCGLSKAGNMELAHSVFEQMPLRNEV 204

Query: 1252 EPQIEHYGCMVDLLSRAGMVEEAFRFIMSMGMEPNAIIWATLL 1124
                  +  M+    R G V  A      M  E   + W  ++
Sbjct: 205  S-----WNSMISGYVRIGDVRAAQSIFYQM-PEKTVVSWTAMI 241


>gb|AER41645.1| CRR4 [Oryza punctata]
          Length = 632

 Score =  281 bits (720), Expect = 3e-73
 Identities = 135/259 (52%), Positives = 181/259 (69%)
 Frame = -1

Query: 1612 GALEQGKWIDSYMKKNGYNLSNVLGNALIDMFAKCGDIEFAIEVFHCITDRCIITWTTMV 1433
            G++E   WI S++ K+  +L+  LGNALIDMFAKCGD+  A  +F+ +  RCIITWTTM+
Sbjct: 355  GSVEYCNWISSFIGKSNTHLTVALGNALIDMFAKCGDVGRAQSIFYKMETRCIITWTTMI 414

Query: 1432 SGLALNGNFREALSLFDTMCREKIEPDYVIFTAVLSACSHGGLVEEGQRVFKQMVMQFGV 1253
            SG A NG  REAL +++ MCRE +E D  +F A L+AC+HGGL++EG  +F +MV Q+ +
Sbjct: 415  SGFAFNGLCREALLVYNNMCREGVELDGTVFIAALAACTHGGLLQEGWSIFNEMVEQYNI 474

Query: 1252 EPQIEHYGCMVDLLSRAGMVEEAFRFIMSMGMEPNAIIWATLLGFCKVYEKQELAEAVTQ 1073
            +P++EHYGC+VDLL RAG ++EA  FI SM +EP+ +IW TLL  C  +   EL E V++
Sbjct: 475  QPRMEHYGCVVDLLGRAGNLQEAILFIESMPLEPSVVIWVTLLSSCVAHGNAELIEYVSK 534

Query: 1072 KILSLEPSNPGYISMISNLNASVGQWDFVTSVRNAMRKEGMEKVPGCSAIQIEDTVHEFL 893
            KI  LEP N  Y  ++SN +A  G+WD V   R +MR  G+EKVPG S IQ+   VHEFL
Sbjct: 535  KITELEPFNSSYQVLVSNCSALEGRWDGVIGARTSMRNWGIEKVPGSSLIQVGSEVHEFL 594

Query: 892  VMDKTHEQRKEIYITLDSL 836
              D  HE+RKEIY T+D L
Sbjct: 595  AKDTRHERRKEIYETVDGL 613


>gb|AER41579.1| CRR4 [Oryza brachyantha]
          Length = 626

 Score =  280 bits (717), Expect = 6e-73
 Identities = 134/259 (51%), Positives = 182/259 (70%)
 Frame = -1

Query: 1612 GALEQGKWIDSYMKKNGYNLSNVLGNALIDMFAKCGDIEFAIEVFHCITDRCIITWTTMV 1433
            G++E   WI S+++K+  +L+  LGNALIDMFAKCGD+  A  +F+ +  RCIITWTTM+
Sbjct: 349  GSVEYCNWISSFIRKSNVHLTIALGNALIDMFAKCGDVGRAQSIFYEMKTRCIITWTTMI 408

Query: 1432 SGLALNGNFREALSLFDTMCREKIEPDYVIFTAVLSACSHGGLVEEGQRVFKQMVMQFGV 1253
            SG A NG  REAL +++ MCRE +E D ++F A L+AC HGGL++EG  +F +MV Q+ +
Sbjct: 409  SGFAFNGLCREALLVYNNMCREGVELDDMVFIAALAACVHGGLLQEGWSIFNEMVEQYNI 468

Query: 1252 EPQIEHYGCMVDLLSRAGMVEEAFRFIMSMGMEPNAIIWATLLGFCKVYEKQELAEAVTQ 1073
            +P++EHYGC+VDLL RAG ++EA  FI SM +EP+ +IWATLL  C  +   E  + V++
Sbjct: 469  QPRMEHYGCVVDLLGRAGNLQEAVLFIESMPLEPSVVIWATLLSSCVAHGNAEFIDYVSK 528

Query: 1072 KILSLEPSNPGYISMISNLNASVGQWDFVTSVRNAMRKEGMEKVPGCSAIQIEDTVHEFL 893
            KI  LEP N  Y  ++SN +A  G+WD V   R  MR  G+EKVPG S+IQ+   VHEFL
Sbjct: 529  KITELEPFNSSYQVLVSNSSALEGRWDGVIGARTIMRNWGIEKVPGSSSIQVGSEVHEFL 588

Query: 892  VMDKTHEQRKEIYITLDSL 836
              D  HE+RKEIY T+D L
Sbjct: 589  AKDTMHERRKEIYETVDGL 607


>dbj|BAC10060.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
          Length = 631

 Score =  278 bits (710), Expect = 4e-72
 Identities = 132/259 (50%), Positives = 182/259 (70%)
 Frame = -1

Query: 1612 GALEQGKWIDSYMKKNGYNLSNVLGNALIDMFAKCGDIEFAIEVFHCITDRCIITWTTMV 1433
            G++E   WI S++ K+  +L+  LGNALIDMFAKCGD+  A  +F+ +  RCIITWTTM+
Sbjct: 356  GSVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAESIFYKMETRCIITWTTMI 415

Query: 1432 SGLALNGNFREALSLFDTMCREKIEPDYVIFTAVLSACSHGGLVEEGQRVFKQMVMQFGV 1253
            SG A NG  R+AL +++ MCRE ++ D  +F A L+AC+HGGL++EG  +F +MV ++ +
Sbjct: 416  SGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGWSIFNEMVERYNI 475

Query: 1252 EPQIEHYGCMVDLLSRAGMVEEAFRFIMSMGMEPNAIIWATLLGFCKVYEKQELAEAVTQ 1073
            +P++EHYGCMVDLL RAG ++EA  FI SM +EP+ +IW TLL  C  +   EL E V++
Sbjct: 476  QPRMEHYGCMVDLLGRAGNLQEAILFIESMPLEPSVVIWVTLLCSCVAHGNAELIEYVSK 535

Query: 1072 KILSLEPSNPGYISMISNLNASVGQWDFVTSVRNAMRKEGMEKVPGCSAIQIEDTVHEFL 893
            KI  LEP N  Y  ++SN +A  G+WD V   R +MR  G+EKVPG S+IQ+   VHEFL
Sbjct: 536  KITELEPFNSSYQVLVSNCSALEGRWDGVIDARTSMRNWGIEKVPGSSSIQVGSEVHEFL 595

Query: 892  VMDKTHEQRKEIYITLDSL 836
              D  H++RKEIY T+D L
Sbjct: 596  AKDTRHKRRKEIYETVDGL 614


>ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
            [Vitis vinifera]
          Length = 698

 Score =  266 bits (680), Expect = 1e-68
 Identities = 120/259 (46%), Positives = 180/259 (69%)
 Frame = -1

Query: 1612 GALEQGKWIDSYMKKNGYNLSNVLGNALIDMFAKCGDIEFAIEVFHCITDRCIITWTTMV 1433
            GALE GKW+  ++KK    L+  LG AL+D +AKCG +E +IEVF  +  + +++WT ++
Sbjct: 340  GALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLI 399

Query: 1432 SGLALNGNFREALSLFDTMCREKIEPDYVIFTAVLSACSHGGLVEEGQRVFKQMVMQFGV 1253
             GLA NG  ++AL  F  M  + +EP+ V F  VLSACSH GLV+EG+ +F  M   FG+
Sbjct: 400  QGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGI 459

Query: 1252 EPQIEHYGCMVDLLSRAGMVEEAFRFIMSMGMEPNAIIWATLLGFCKVYEKQELAEAVTQ 1073
            EP+IEHYGCMVD+L RAG++EEAF+FI +M ++PNA+IW TLL  CKV++  E+ E   +
Sbjct: 460  EPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLK 519

Query: 1072 KILSLEPSNPGYISMISNLNASVGQWDFVTSVRNAMRKEGMEKVPGCSAIQIEDTVHEFL 893
            +++ LEP++ G   ++SN+ ASVG+W+    VR  M+++G++K PGCS I+++  +HEF 
Sbjct: 520  QLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFF 579

Query: 892  VMDKTHEQRKEIYITLDSL 836
              D  H Q +EIY  ++ +
Sbjct: 580  AEDNVHSQSEEIYNAIEDM 598



 Score = 85.9 bits (211), Expect = 3e-14
 Identities = 46/161 (28%), Positives = 88/161 (54%)
 Frame = -1

Query: 1606 LEQGKWIDSYMKKNGYNLSNVLGNALIDMFAKCGDIEFAIEVFHCITDRCIITWTTMVSG 1427
            LE G+WI+ Y+++ G   +  L  +L+DM+AKCG ++ A  +F  +  R ++ W+ M+SG
Sbjct: 241  LELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISG 300

Query: 1426 LALNGNFREALSLFDTMCREKIEPDYVIFTAVLSACSHGGLVEEGQRVFKQMVMQFGVEP 1247
             +     REAL LF  M +  I+P+ +   ++LS+C+  G +E G+ V    + +  ++ 
Sbjct: 301  YSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWV-HFFIKKKRMKL 359

Query: 1246 QIEHYGCMVDLLSRAGMVEEAFRFIMSMGMEPNAIIWATLL 1124
             +     ++D  ++ G VE +      M ++ N + W  L+
Sbjct: 360  TVTLGTALMDFYAKCGSVESSIEVFGKMPVK-NVLSWTVLI 399



 Score = 81.3 bits (199), Expect = 7e-13
 Identities = 54/201 (26%), Positives = 102/201 (50%), Gaps = 1/201 (0%)
 Frame = -1

Query: 1609 ALEQGKWIDSYMKKNGYNLSNVLGNALIDMFAKCGDIEFAIEVFHCITDRCIITWTTMVS 1430
            AL +G+ I + + K G+     + N LI M+A CG++E A  VF  +++R + TW +M +
Sbjct: 139  ALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFA 198

Query: 1429 GLALNGNFREALSLFDTMCREKIEPDYVIFTAVLSACSHGGLVEEGQRVFKQMVMQFGVE 1250
            G   +GN+ E + LF  M    I  D V   +VL+AC     +E G+ +  + V + G++
Sbjct: 199  GYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWI-NRYVEEKGLK 257

Query: 1249 PQIEHYGCMVDLLSRAGMVEEAFRFIMSMGMEPNAIIWATLL-GFCKVYEKQELAEAVTQ 1073
                    +VD+ ++ G V+ A R    M    + + W+ ++ G+ +    +E  +   +
Sbjct: 258  GNPTLITSLVDMYAKCGQVDTARRLFDQMDRR-DVVAWSAMISGYSQASRCREALDLFHE 316

Query: 1072 KILSLEPSNPGYISMISNLNA 1010
              +     +P  I+M+S L++
Sbjct: 317  --MQKANIDPNEITMVSILSS 335