BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00015699
         (1859 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284873.1| PREDICTED: tRNA-splicing endonuclease subuni...   264   7e-68
ref|XP_002313727.1| predicted protein [Populus trichocarpa] gi|2...   252   2e-64
gb|ABK93461.1| unknown [Populus trichocarpa]                          252   2e-64
ref|XP_002526336.1| tRNA-splicing endonuclease subunit Sen2-2, p...   244   6e-62
ref|XP_004171728.1| PREDICTED: tRNA-splicing endonuclease subuni...   238   3e-60

>ref|XP_002284873.1| PREDICTED: tRNA-splicing endonuclease subunit Sen2-1 [Vitis vinifera]
          Length = 242

 Score =  264 bits (674), Expect = 7e-68
 Identities = 130/233 (55%), Positives = 161/233 (69%), Gaps = 1/233 (0%)
 Frame = +3

Query: 1074 LNTRWKGKGSKAIALANPMSKIVAXXXXXXXXXKACXXXXXXXXXXXXXXXXXDLLNRAC 1253
            +  RWKGKG++A ALA PMS+IV+          +                  +LLNR+C
Sbjct: 1    MGPRWKGKGAEAKALAEPMSEIVSQLQSSLTRSDSQGLLSGCSVLLEAGAEQTELLNRSC 60

Query: 1254 FGHPIITDNEDSQWYELSLEEAFYLCHFLKCLDIVGKNHCFQNIEKVWQFMKSKRALFPI 1433
            FG P+IT  +D QW++LS+EEAFYLCH L CL IVG+++  +N E++WQ+MKS+R  FP 
Sbjct: 61   FGRPVITAEKDKQWFQLSMEEAFYLCHSLGCLKIVGEDNHLKNDEELWQYMKSRRETFPD 120

Query: 1434 SYKAYSHLRAKNWFVRSGIQYGVNFVAYSHHPSLVHSEYAVLV-SECNSSRNARLLAWPD 1610
             Y AYSHLR KNW VRSG QYGV+FVAY HHP+LVHSEYAVLV SE N + N RL  W D
Sbjct: 121  FYMAYSHLRIKNWVVRSGSQYGVDFVAYRHHPALVHSEYAVLVLSEENENANGRLRVWSD 180

Query: 1611 LHATVRLEGGVAKTLLVLHIEKNGCDTVSSSCLKHYTVEEQTVTRWSSEQCRE 1769
               T+RL G VAKTLLV+HI KNG    +  CLK Y+VEE+T+TRWS+EQCRE
Sbjct: 181  FDCTIRLCGSVAKTLLVIHINKNGHGATTPLCLKKYSVEERTITRWSAEQCRE 233



 Score =  221 bits (564), Expect = 4e-55
 Identities = 112/195 (57%), Positives = 142/195 (72%), Gaps = 4/195 (2%)
 Frame = +3

Query: 369 CAVLLEVELEQANLLDQACFGCHIVTACKDKKHYELSLEEAFYLCHSLKCLEVVWRDKCL 548
           C+VLLE   EQ  LL+++CFG  ++TA KDK+ ++LS+EEAFYLCHSL CL++V  D  L
Sbjct: 42  CSVLLEAGAEQTELLNRSCFGRPVITAEKDKQWFQLSMEEAFYLCHSLGCLKIVGEDNHL 101

Query: 549 ENDE-LWEFMTSRRKLFPFFYKAYSHLRAKNWVVKSEIKYGVDFVAYHHHPSLVHSEYAV 725
           +NDE LW++M SRR+ FP FY AYSHLR KNWVV+S  +YGVDFVAY HHP+LVHSEYAV
Sbjct: 102 KNDEELWQYMKSRRETFPDFYMAYSHLRIKNWVVRSGSQYGVDFVAYRHHPALVHSEYAV 161

Query: 726 IVL-KGNEDIT-RLMAWPSFHAILRLEDGVAKTLLLLHIN-NVHDRVSSSCFEHYTVEEQ 896
           +VL + NE+   RL  W  F   +RL   VAKTLL++HIN N H   +  C + Y+VEE+
Sbjct: 162 LVLSEENENANGRLRVWSDFDCTIRLCGSVAKTLLVIHINKNGHGATTPLCLKKYSVEER 221

Query: 897 IIARWNPEQCHEEHT 941
            I RW+ EQC E  T
Sbjct: 222 TITRWSAEQCREVQT 236


>ref|XP_002313727.1| predicted protein [Populus trichocarpa] gi|222850135|gb|EEE87682.1|
            predicted protein [Populus trichocarpa]
          Length = 235

 Score =  252 bits (644), Expect = 2e-64
 Identities = 123/235 (52%), Positives = 158/235 (67%)
 Frame = +3

Query: 1074 LNTRWKGKGSKAIALANPMSKIVAXXXXXXXXXKACXXXXXXXXXXXXXXXXXDLLNRAC 1253
            +  RWKGKG++A ALA+PMS+IV+          AC                 +LL RAC
Sbjct: 1    MGPRWKGKGAEAKALADPMSEIVSQLQSSLLQSNACASLSGCSVLLAVETEQTELLTRAC 60

Query: 1254 FGHPIITDNEDSQWYELSLEEAFYLCHFLKCLDIVGKNHCFQNIEKVWQFMKSKRALFPI 1433
            FG PIIT  ++ QW++L LEEAFYLC+ LKCL I G+++  +N   +W +MK K+  FP 
Sbjct: 61   FGKPIITAEKEKQWFQLGLEEAFYLCYSLKCLKIAGEDNFVKNDLDLWLYMKLKKEKFPD 120

Query: 1434 SYKAYSHLRAKNWFVRSGIQYGVNFVAYSHHPSLVHSEYAVLVSECNSSRNARLLAWPDL 1613
             YKAYSHLR KNW +R G+QYGV+FVAY HHPSLVHSEYAV+V   +     RL  W D 
Sbjct: 121  FYKAYSHLRMKNWVLRPGLQYGVDFVAYQHHPSLVHSEYAVIV--LSEGDTGRLRVWSDF 178

Query: 1614 HATVRLEGGVAKTLLVLHIEKNGCDTVSSSCLKHYTVEEQTVTRWSSEQCRENKK 1778
            H T+RL G VAKTLL+L+++KNG   +S SCL+ Y+VEE T+TRWS EQ R++KK
Sbjct: 179  HCTIRLCGSVAKTLLILNVDKNGHGAISPSCLERYSVEECTITRWSPEQSRDDKK 233



 Score =  219 bits (557), Expect = 3e-54
 Identities = 109/195 (55%), Positives = 140/195 (71%), Gaps = 2/195 (1%)
 Frame = +3

Query: 369 CAVLLEVELEQANLLDQACFGCHIVTACKDKKHYELSLEEAFYLCHSLKCLEVVWRDKCL 548
           C+VLL VE EQ  LL +ACFG  I+TA K+K+ ++L LEEAFYLC+SLKCL++   D  +
Sbjct: 42  CSVLLAVETEQTELLTRACFGKPIITAEKEKQWFQLGLEEAFYLCYSLKCLKIAGEDNFV 101

Query: 549 END-ELWEFMTSRRKLFPFFYKAYSHLRAKNWVVKSEIKYGVDFVAYHHHPSLVHSEYAV 725
           +ND +LW +M  +++ FP FYKAYSHLR KNWV++  ++YGVDFVAY HHPSLVHSEYAV
Sbjct: 102 KNDLDLWLYMKLKKEKFPDFYKAYSHLRMKNWVLRPGLQYGVDFVAYQHHPSLVHSEYAV 161

Query: 726 IVLKGNEDITRLMAWPSFHAILRLEDGVAKTLLLLHIN-NVHDRVSSSCFEHYTVEEQII 902
           IVL    D  RL  W  FH  +RL   VAKTLL+L+++ N H  +S SC E Y+VEE  I
Sbjct: 162 IVL-SEGDTGRLRVWSDFHCTIRLCGSVAKTLLILNVDKNGHGAISPSCLERYSVEECTI 220

Query: 903 ARWNPEQCHEEHTTS 947
            RW+PEQ  ++   S
Sbjct: 221 TRWSPEQSRDDKKAS 235


>gb|ABK93461.1| unknown [Populus trichocarpa]
          Length = 235

 Score =  252 bits (644), Expect = 2e-64
 Identities = 123/235 (52%), Positives = 158/235 (67%)
 Frame = +3

Query: 1074 LNTRWKGKGSKAIALANPMSKIVAXXXXXXXXXKACXXXXXXXXXXXXXXXXXDLLNRAC 1253
            +  RWKGKG++A ALA+PMS+IV+          AC                 +LL RAC
Sbjct: 1    MGPRWKGKGAEAKALADPMSEIVSQLQSSLLQSNACASLSGCSVLLAVETEKTELLTRAC 60

Query: 1254 FGHPIITDNEDSQWYELSLEEAFYLCHFLKCLDIVGKNHCFQNIEKVWQFMKSKRALFPI 1433
            FG PIIT  ++ QW++L LEEAFYLC+ LKCL I G+++  +N   +W +MK K+  FP 
Sbjct: 61   FGKPIITAEKEKQWFQLGLEEAFYLCYSLKCLKIAGEDNFVKNDLDLWLYMKLKKEKFPD 120

Query: 1434 SYKAYSHLRAKNWFVRSGIQYGVNFVAYSHHPSLVHSEYAVLVSECNSSRNARLLAWPDL 1613
             YKAYSHLR KNW +R G+QYGV+FVAY HHPSLVHSEYAV+V   +     RL  W D 
Sbjct: 121  FYKAYSHLRMKNWVLRPGLQYGVDFVAYQHHPSLVHSEYAVIV--LSEGDTGRLRVWSDF 178

Query: 1614 HATVRLEGGVAKTLLVLHIEKNGCDTVSSSCLKHYTVEEQTVTRWSSEQCRENKK 1778
            H T+RL G VAKTLL+L+++KNG   +S SCL+ Y+VEE T+TRWS EQ R++KK
Sbjct: 179  HCTIRLCGSVAKTLLILNVDKNGHGAISPSCLERYSVEECTITRWSPEQSRDDKK 233



 Score =  217 bits (553), Expect = 7e-54
 Identities = 108/195 (55%), Positives = 140/195 (71%), Gaps = 2/195 (1%)
 Frame = +3

Query: 369 CAVLLEVELEQANLLDQACFGCHIVTACKDKKHYELSLEEAFYLCHSLKCLEVVWRDKCL 548
           C+VLL VE E+  LL +ACFG  I+TA K+K+ ++L LEEAFYLC+SLKCL++   D  +
Sbjct: 42  CSVLLAVETEKTELLTRACFGKPIITAEKEKQWFQLGLEEAFYLCYSLKCLKIAGEDNFV 101

Query: 549 END-ELWEFMTSRRKLFPFFYKAYSHLRAKNWVVKSEIKYGVDFVAYHHHPSLVHSEYAV 725
           +ND +LW +M  +++ FP FYKAYSHLR KNWV++  ++YGVDFVAY HHPSLVHSEYAV
Sbjct: 102 KNDLDLWLYMKLKKEKFPDFYKAYSHLRMKNWVLRPGLQYGVDFVAYQHHPSLVHSEYAV 161

Query: 726 IVLKGNEDITRLMAWPSFHAILRLEDGVAKTLLLLHIN-NVHDRVSSSCFEHYTVEEQII 902
           IVL    D  RL  W  FH  +RL   VAKTLL+L+++ N H  +S SC E Y+VEE  I
Sbjct: 162 IVL-SEGDTGRLRVWSDFHCTIRLCGSVAKTLLILNVDKNGHGAISPSCLERYSVEECTI 220

Query: 903 ARWNPEQCHEEHTTS 947
            RW+PEQ  ++   S
Sbjct: 221 TRWSPEQSRDDKKAS 235


>ref|XP_002526336.1| tRNA-splicing endonuclease subunit Sen2-2, putative [Ricinus
            communis] gi|223534295|gb|EEF36007.1| tRNA-splicing
            endonuclease subunit Sen2-2, putative [Ricinus communis]
          Length = 237

 Score =  244 bits (623), Expect = 6e-62
 Identities = 125/233 (53%), Positives = 155/233 (66%), Gaps = 1/233 (0%)
 Frame = +3

Query: 1074 LNTRWKGKGSKAIALANPMSKIVAXXXXXXXXXKACXXXXXXXXXXXXXXXXXDLLNRAC 1253
            + TRWKGKGS+A A A+PMSKI++          A                  +LL RAC
Sbjct: 1    MGTRWKGKGSEAKAAADPMSKIISQLCSSLIQFDAHGLLSGCSVLLAVESEQTELLTRAC 60

Query: 1254 FGHPIITDNEDSQWYELSLEEAFYLCHFLKCLDIVGKNHCFQNIEKVWQFMKSKRALFPI 1433
            FG P+IT  +D QW++L +EEAFYL + LKC+ IV +++C  +  ++WQFMKS++  FP 
Sbjct: 61   FGRPMITSEKDKQWFQLGIEEAFYLSYSLKCIKIVSEDNCCISDLELWQFMKSQKPTFPD 120

Query: 1434 SYKAYSHLRAKNWFVRSGIQYGVNFVAYSHHPSLVHSEYAVLV-SECNSSRNARLLAWPD 1610
             YKAYSHLR KNW VR G QYGV+FVAY HHPSLVHSEYAVLV SE +++ N RL  W D
Sbjct: 121  FYKAYSHLRMKNWVVRPGSQYGVDFVAYRHHPSLVHSEYAVLVLSEEDANANGRLRVWSD 180

Query: 1611 LHATVRLEGGVAKTLLVLHIEKNGCDTVSSSCLKHYTVEEQTVTRWSSEQCRE 1769
             H T+RL G VAKTLLVL I KN   T   SCL+ Y+VEE+T  RWS +Q RE
Sbjct: 181  FHCTLRLCGSVAKTLLVLGINKNCHGTTLPSCLEKYSVEERTFARWSPQQSRE 233



 Score =  214 bits (546), Expect = 5e-53
 Identities = 111/193 (57%), Positives = 136/193 (70%), Gaps = 5/193 (2%)
 Frame = +3

Query: 369 CAVLLEVELEQANLLDQACFGCHIVTACKDKKHYELSLEEAFYLCHSLKCLEVVWRDKCL 548
           C+VLL VE EQ  LL +ACFG  ++T+ KDK+ ++L +EEAFYL +SLKC+++V  D C 
Sbjct: 42  CSVLLAVESEQTELLTRACFGRPMITSEKDKQWFQLGIEEAFYLSYSLKCIKIVSEDNCC 101

Query: 549 END-ELWEFMTSRRKLFPFFYKAYSHLRAKNWVVKSEIKYGVDFVAYHHHPSLVHSEYAV 725
            +D ELW+FM S++  FP FYKAYSHLR KNWVV+   +YGVDFVAY HHPSLVHSEYAV
Sbjct: 102 ISDLELWQFMKSQKPTFPDFYKAYSHLRMKNWVVRPGSQYGVDFVAYRHHPSLVHSEYAV 161

Query: 726 IVLKGNEDIT---RLMAWPSFHAILRLEDGVAKTLLLLHIN-NVHDRVSSSCFEHYTVEE 893
           +VL   ED     RL  W  FH  LRL   VAKTLL+L IN N H     SC E Y+VEE
Sbjct: 162 LVL-SEEDANANGRLRVWSDFHCTLRLCGSVAKTLLVLGINKNCHGTTLPSCLEKYSVEE 220

Query: 894 QIIARWNPEQCHE 932
           +  ARW+P+Q  E
Sbjct: 221 RTFARWSPQQSRE 233


>ref|XP_004171728.1| PREDICTED: tRNA-splicing endonuclease subunit Sen2-2-like [Cucumis
            sativus]
          Length = 281

 Score =  238 bits (608), Expect = 3e-60
 Identities = 124/248 (50%), Positives = 154/248 (62%), Gaps = 2/248 (0%)
 Frame = +3

Query: 1035 NLTLTSPSPMMVDLNTRWKGKGSKAIALANPMSKIVAXXXXXXXXXKACXXXXXXXXXXX 1214
            + T++ P+ M      RWKGK S+A ALA+P+S  V           A            
Sbjct: 34   DFTVSPPASMA----PRWKGKASEAKALADPISNTVLHLQSSFIHSNAQGLLSGSIILYL 89

Query: 1215 XXXXXXDLLNRACFGHPIITDNEDSQWYELSLEEAFYLCHFLKCLDIVGKNHCFQNIEKV 1394
                  DLLNR CFG PI+T  +D QW++  +EEAFYL + L CL IV    C +N +++
Sbjct: 90   ADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQEL 149

Query: 1395 WQFMKSKRALFPISYKAYSHLRAKNWFVRSGIQYGVNFVAYSHHPSLVHSEYAVLV--SE 1568
            W++MK+++A FP  Y AY HLR KNW VR G QYGV+FVAY HHPSLVHSE+AVLV    
Sbjct: 150  WRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEA 209

Query: 1569 CNSSRNARLLAWPDLHATVRLEGGVAKTLLVLHIEKNGCDTVSSSCLKHYTVEEQTVTRW 1748
             +S+ N RL  W D   TVRL G VAKTLLVL +  NG   VS SCL  Y++EE+TVTRW
Sbjct: 210  TDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRW 269

Query: 1749 SSEQCREN 1772
            S EQCREN
Sbjct: 270  SPEQCREN 277



 Score =  183 bits (465), Expect = 1e-43
 Identities = 95/191 (49%), Positives = 126/191 (65%), Gaps = 5/191 (2%)
 Frame = +3

Query: 375 VLLEVELEQANLLDQACFGCHIVTACKDKKHYELSLEEAFYLCHSLKCLEVVWRDKCLEN 554
           +L   + EQ +LL++ CFG  I+TA KDK+ ++  +EEAFYL + L CL++V    C +N
Sbjct: 86  ILYLADEEQTDLLNRTCFGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKN 145

Query: 555 -DELWEFMTSRRKLFPFFYKAYSHLRAKNWVVKSEIKYGVDFVAYHHHPSLVHSEYAVIV 731
             ELW +M +++  FP FY AY HLR KNWVV+   +YGVDFVAY HHPSLVHSE+AV+V
Sbjct: 146 FQELWRYMKTQKATFPEFYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLV 205

Query: 732 LKGNEDIT---RLMAWPSFHAILRLEDGVAKTLLLLHIN-NVHDRVSSSCFEHYTVEEQI 899
           L    D     RL  W  F   +RL   VAKTLL+L +N N    VS SC + Y++EE+ 
Sbjct: 206 LCEATDSNGNGRLRVWSDFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERT 265

Query: 900 IARWNPEQCHE 932
           + RW+PEQC E
Sbjct: 266 VTRWSPEQCRE 276