BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00015660
         (389 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFK39810.1| unknown [Lotus japonicus] gi|388512023|gb|AFK4407...   196   2e-48
gb|AAQ24852.1| 10 kDa photosystem II polypeptide [Trifolium prat...   188   3e-46
ref|XP_002529952.1| Photosystem II 10 kDa polypeptide, chloropla...   188   4e-46
gb|ABI14811.1| chloroplast photosystem II light-inducible protei...   186   2e-45
sp|P10690.1|PSBR_SPIOL RecName: Full=Photosystem II 10 kDa polyp...   184   8e-45

>gb|AFK39810.1| unknown [Lotus japonicus] gi|388512023|gb|AFK44073.1| unknown
           [Lotus japonicus]
          Length = 139

 Score =  196 bits (497), Expect = 2e-48
 Identities = 101/133 (75%), Positives = 112/133 (84%), Gaps = 7/133 (5%)
 Frame = -1

Query: 380 MMSSVTLKPS------SAVRGLPSLARTT-TFRVQASGVKKIKTDTPYGTGGGMDLRNGV 222
           +M+SV+LKP+      S+VRGLPSL+R++ +FRV ASG KKIKTDTPYGTGGGM+LRNGV
Sbjct: 5   VMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNLRNGV 64

Query: 221 DASGRKPTGKGVYQFVDKYGANVDGYSPIYDEKDWSPTGDVYAGGTTGLAIWAVTXXXXX 42
           DASGRKP GKGVYQ+VDKYGANVDGYSPIYD KDWSPTGDVYAGGTTGLAIWAVT     
Sbjct: 65  DASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTLLGLL 124

Query: 41  XXXXXLVYNTSAL 3
                LVYNTSAL
Sbjct: 125 AGGALLVYNTSAL 137


>gb|AAQ24852.1| 10 kDa photosystem II polypeptide [Trifolium pratense]
          Length = 136

 Score =  188 bits (478), Expect = 3e-46
 Identities = 98/132 (74%), Positives = 107/132 (81%), Gaps = 6/132 (4%)
 Frame = -1

Query: 380 MMSSVTLKPS------SAVRGLPSLARTTTFRVQASGVKKIKTDTPYGTGGGMDLRNGVD 219
           +M+SV+LKP+      S+VRGLP+L+R   FRV ASGVKKIKTDTPYGTGGGMDL NG+D
Sbjct: 5   VMASVSLKPTPFMVEKSSVRGLPNLSRP--FRVVASGVKKIKTDTPYGTGGGMDLPNGLD 62

Query: 218 ASGRKPTGKGVYQFVDKYGANVDGYSPIYDEKDWSPTGDVYAGGTTGLAIWAVTXXXXXX 39
           ASGRK  GKGVYQFVDKYGANVDGYSPIY+ KDWSPTGDVY GGTTGLAIWAVT      
Sbjct: 63  ASGRKQKGKGVYQFVDKYGANVDGYSPIYEPKDWSPTGDVYTGGTTGLAIWAVTLAGLLA 122

Query: 38  XXXXLVYNTSAL 3
               LVYNTSAL
Sbjct: 123 GGALLVYNTSAL 134


>ref|XP_002529952.1| Photosystem II 10 kDa polypeptide, chloroplast precursor, putative
           [Ricinus communis] gi|223530550|gb|EEF32429.1|
           Photosystem II 10 kDa polypeptide, chloroplast
           precursor, putative [Ricinus communis]
          Length = 138

 Score =  188 bits (477), Expect = 4e-46
 Identities = 96/133 (72%), Positives = 108/133 (81%), Gaps = 7/133 (5%)
 Frame = -1

Query: 380 MMSSVTLKPS-------SAVRGLPSLARTTTFRVQASGVKKIKTDTPYGTGGGMDLRNGV 222
           +M+SV+LKPS       S+VRGLP+L+R T FR++ASG KKIKTD PYG GGGM+LRNGV
Sbjct: 5   VMASVSLKPSPFTVQKSSSVRGLPTLSRRT-FRIEASGGKKIKTDKPYGIGGGMELRNGV 63

Query: 221 DASGRKPTGKGVYQFVDKYGANVDGYSPIYDEKDWSPTGDVYAGGTTGLAIWAVTXXXXX 42
           DASGRKPTGKGVYQFVDKYGANVDGYSPIY+  +WSPTGDVYAGG TGLAIWA+T     
Sbjct: 64  DASGRKPTGKGVYQFVDKYGANVDGYSPIYNTDEWSPTGDVYAGGATGLAIWAITLAGLL 123

Query: 41  XXXXXLVYNTSAL 3
                LVYNTSAL
Sbjct: 124 AGGALLVYNTSAL 136


>gb|ABI14811.1| chloroplast photosystem II light-inducible protein [Pachysandra
           terminalis]
          Length = 138

 Score =  186 bits (472), Expect = 2e-45
 Identities = 95/135 (70%), Positives = 109/135 (80%), Gaps = 6/135 (4%)
 Frame = -1

Query: 389 STVMMSSVTLKPS-----SAVRGLPSLAR-TTTFRVQASGVKKIKTDTPYGTGGGMDLRN 228
           +T +MSS++LK S     SA RGLPSLAR +++FRV+ASGVKKIKTD PYGTGGGM LR+
Sbjct: 2   ATSVMSSLSLKASPFLEKSAARGLPSLARPSSSFRVEASGVKKIKTDKPYGTGGGMSLRD 61

Query: 227 GVDASGRKPTGKGVYQFVDKYGANVDGYSPIYDEKDWSPTGDVYAGGTTGLAIWAVTXXX 48
           G+DASGRKP GKGVYQFVDKYGANVDGYSPIYD+ DWSP+G VY GGTTGL +WA+T   
Sbjct: 62  GLDASGRKPKGKGVYQFVDKYGANVDGYSPIYDQXDWSPSGAVYVGGTTGLLVWAITLAA 121

Query: 47  XXXXXXXLVYNTSAL 3
                  LVYNTSAL
Sbjct: 122 LLLGGALLVYNTSAL 136


>sp|P10690.1|PSBR_SPIOL RecName: Full=Photosystem II 10 kDa polypeptide, chloroplastic;
           Flags: Precursor gi|170127|gb|AAA34037.1| 10kd
           polypeptide precursor [Spinacia oleracea]
          Length = 140

 Score =  184 bits (466), Expect = 8e-45
 Identities = 95/137 (69%), Positives = 111/137 (81%), Gaps = 8/137 (5%)
 Frame = -1

Query: 389 STVMMSSVTLKPSS-------AVRGLPSLARTT-TFRVQASGVKKIKTDTPYGTGGGMDL 234
           +T +MSS++LKPSS       AV+GLPSL+R++ +F V+ASGVKKIK D P G GGGM L
Sbjct: 2   ATSVMSSLSLKPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMKL 61

Query: 233 RNGVDASGRKPTGKGVYQFVDKYGANVDGYSPIYDEKDWSPTGDVYAGGTTGLAIWAVTX 54
           R+GVD+SGRKPTGKGVYQFVDKYGANVDGYSPIY+E++W+PTGDVYAGGTTGL IWAVT 
Sbjct: 62  RDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTL 121

Query: 53  XXXXXXXXXLVYNTSAL 3
                    LVYNTSAL
Sbjct: 122 AGLLAGGALLVYNTSAL 138