BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00015633
         (714 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta...   288   8e-76
ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II su...   281   7e-74
emb|CBI40277.3| unnamed protein product [Vitis vinifera]              281   9e-74
ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II su...   281   9e-74
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]   281   9e-74

>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
           gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
           II subunit, putative [Ricinus communis]
          Length = 318

 Score =  288 bits (737), Expect = 8e-76
 Identities = 145/175 (82%), Positives = 157/175 (89%)
 Frame = -1

Query: 714 DASENRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIRINXXXXXXX 535
           D+SE RGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP+I IN       
Sbjct: 144 DSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIHINEDLMESL 203

Query: 534 XXXEKNVWIESSPTKVFGIDPNTHQVMVVDAEAYTYDEEVIKKAEAMGKPGLVEIEAKED 355
              EK  W+ESSPTKVF IDPNT QV+VVD EAYTYDEEVIKKAE+MGKPGLV I+AKED
Sbjct: 204 SLEEKQSWVESSPTKVFDIDPNTQQVVVVDPEAYTYDEEVIKKAESMGKPGLVNIQAKED 263

Query: 354 SFIFTVESTGAVKASQLVINAIDVLKQKLDAVRLSDDTVEADDQFGELGSHMRGG 190
           SFIFTVESTGA+KASQLV+NAI++LKQKLDAVRLS+DTVEADDQFGELG+HMRGG
Sbjct: 264 SFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELGAHMRGG 318


>ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
           [Glycine max]
          Length = 319

 Score =  281 bits (720), Expect = 7e-74
 Identities = 142/175 (81%), Positives = 156/175 (89%)
 Frame = -1

Query: 714 DASENRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIRINXXXXXXX 535
           D+  NRGIIIVKLRRGQEL+LRAIARKGIGKDHAKWSPAATVTFMYEPEI IN       
Sbjct: 145 DSDNNRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMETL 204

Query: 534 XXXEKNVWIESSPTKVFGIDPNTHQVMVVDAEAYTYDEEVIKKAEAMGKPGLVEIEAKED 355
              EK  W++SSPT+VF IDP T QVMVVDAEAYTYD+EV+KKAEAMGKPGLVEI A++D
Sbjct: 205 TLEEKREWVDSSPTRVFEIDPVTQQVMVVDAEAYTYDDEVLKKAEAMGKPGLVEIIARQD 264

Query: 354 SFIFTVESTGAVKASQLVINAIDVLKQKLDAVRLSDDTVEADDQFGELGSHMRGG 190
           SFIFTVESTGAVKASQLV+NAI++LKQKLDAVRLS+DTVEADDQFGELG+HMRGG
Sbjct: 265 SFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELGAHMRGG 319


>emb|CBI40277.3| unnamed protein product [Vitis vinifera]
          Length = 206

 Score =  281 bits (719), Expect = 9e-74
 Identities = 142/175 (81%), Positives = 156/175 (89%)
 Frame = -1

Query: 714 DASENRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIRINXXXXXXX 535
           D+++ +GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEI IN       
Sbjct: 32  DSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESL 91

Query: 534 XXXEKNVWIESSPTKVFGIDPNTHQVMVVDAEAYTYDEEVIKKAEAMGKPGLVEIEAKED 355
              EK  W+ESSPTKVF ID ++ QV+V DAEAYTYD+EV+KKAEAMGKPGLVEI AKED
Sbjct: 92  TLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYDDEVLKKAEAMGKPGLVEIYAKED 151

Query: 354 SFIFTVESTGAVKASQLVINAIDVLKQKLDAVRLSDDTVEADDQFGELGSHMRGG 190
           SFIFTVESTGA+KASQLV+NAIDVLKQKLDAVRLS+DTVEADDQFGELG+HMRGG
Sbjct: 152 SFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTVEADDQFGELGAHMRGG 206


>ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
           vinifera]
          Length = 318

 Score =  281 bits (719), Expect = 9e-74
 Identities = 142/175 (81%), Positives = 156/175 (89%)
 Frame = -1

Query: 714 DASENRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIRINXXXXXXX 535
           D+++ +GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEI IN       
Sbjct: 144 DSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESL 203

Query: 534 XXXEKNVWIESSPTKVFGIDPNTHQVMVVDAEAYTYDEEVIKKAEAMGKPGLVEIEAKED 355
              EK  W+ESSPTKVF ID ++ QV+V DAEAYTYD+EV+KKAEAMGKPGLVEI AKED
Sbjct: 204 TLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYDDEVLKKAEAMGKPGLVEIYAKED 263

Query: 354 SFIFTVESTGAVKASQLVINAIDVLKQKLDAVRLSDDTVEADDQFGELGSHMRGG 190
           SFIFTVESTGA+KASQLV+NAIDVLKQKLDAVRLS+DTVEADDQFGELG+HMRGG
Sbjct: 264 SFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTVEADDQFGELGAHMRGG 318


>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
          Length = 318

 Score =  281 bits (719), Expect = 9e-74
 Identities = 142/175 (81%), Positives = 156/175 (89%)
 Frame = -1

Query: 714 DASENRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIRINXXXXXXX 535
           D+++ +GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEI IN       
Sbjct: 144 DSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESL 203

Query: 534 XXXEKNVWIESSPTKVFGIDPNTHQVMVVDAEAYTYDEEVIKKAEAMGKPGLVEIEAKED 355
              EK  W+ESSPTKVF ID ++ QV+V DAEAYTYD+EV+KKAEAMGKPGLVEI AKED
Sbjct: 204 TLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYDDEVLKKAEAMGKPGLVEIYAKED 263

Query: 354 SFIFTVESTGAVKASQLVINAIDVLKQKLDAVRLSDDTVEADDQFGELGSHMRGG 190
           SFIFTVESTGA+KASQLV+NAIDVLKQKLDAVRLS+DTVEADDQFGELG+HMRGG
Sbjct: 264 SFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTVEADDQFGELGAHMRGG 318