BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00015395
         (533 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]             220   1e-55
gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsi...   207   1e-51
gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]             206   2e-51
gb|AFU25705.1| gag-pol precursor [Castanea mollissima]                205   3e-51
gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]               193   2e-47

>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score =  220 bits (560), Expect = 1e-55
 Identities = 99/176 (56%), Positives = 138/176 (78%)
 Frame = -1

Query: 530  IEIYIDDMVEKSMSEQEHLEGLKETFQILRTHNLKLNPEKCTFGVTTGKFLGYIVTQRGI 351
            +E+YIDDM+ KS+  ++H+E L + F +L T+ +KLNP KCTFGVT+G+FLGY+VT+RGI
Sbjct: 974  VEVYIDDMLVKSLKPEDHVEHLSKCFDVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGI 1033

Query: 350  EANPEQIRSLVEMPSPQTVKEVQRLAGRVAALNRFISKSSDKCRPLYKLLRNTTDFTWTT 171
            EANP+QIR+++E+PSP+  +EVQRL GR+AALNRFIS+S+DKC P Y LL+    F W  
Sbjct: 1034 EANPKQIRAILELPSPRNAREVQRLTGRIAALNRFISRSTDKCLPFYNLLKRRAQFDWDK 1093

Query: 170  ECEQAFQGLKRYLEGTPLLSQPEEGEKLYLYLGVTDYAISSVLVRVVDKIERPVYF 3
            + E+AF+ LK YL   P+L +PE GE LYLY+ V+D+A+SSVLVR     +RP+++
Sbjct: 1094 DSEEAFEKLKDYLSTPPILVKPEVGETLYLYIAVSDHAVSSVLVREDRGEQRPIFY 1149


>gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  207 bits (526), Expect = 1e-51
 Identities = 95/176 (53%), Positives = 134/176 (76%)
 Frame = -1

Query: 530  IEIYIDDMVEKSMSEQEHLEGLKETFQILRTHNLKLNPEKCTFGVTTGKFLGYIVTQRGI 351
            +E+YIDDM+ KS+ +++H++ L+E F IL  + +KLNP KCTFGV +G+FLGYIVT+RGI
Sbjct: 614  MEVYIDDMLIKSLKKEDHVKHLEECFAILNQYQMKLNPAKCTFGVPSGEFLGYIVTKRGI 673

Query: 350  EANPEQIRSLVEMPSPQTVKEVQRLAGRVAALNRFISKSSDKCRPLYKLLRNTTDFTWTT 171
            EANP QI + + MPSP+  KEVQRL GR+AALNRFIS+S+DK  P Y++L+   +F W  
Sbjct: 674  EANPNQINAFLNMPSPKNFKEVQRLTGRIAALNRFISRSTDKSLPFYQILKGNKEFLWDE 733

Query: 170  ECEQAFQGLKRYLEGTPLLSQPEEGEKLYLYLGVTDYAISSVLVRVVDKIERPVYF 3
            +CE+AF  LK YL   P+L +PE  EKLYLY+ V+++A+S VL+R     ++P+Y+
Sbjct: 734  KCEEAFGQLKAYLTSPPVLFKPELDEKLYLYVSVSNHAVSGVLIREDRGEQKPIYY 789


>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score =  206 bits (523), Expect = 2e-51
 Identities = 96/176 (54%), Positives = 133/176 (75%)
 Frame = -1

Query: 530 IEIYIDDMVEKSMSEQEHLEGLKETFQILRTHNLKLNPEKCTFGVTTGKFLGYIVTQRGI 351
           +E+YIDDM+ KS+ +++H++ L+E F IL  + +KLNP KCTFGV +G+FLGYIVT+RGI
Sbjct: 171 MEVYIDDMLVKSLKKEDHVKHLEECFGILNKYQMKLNPAKCTFGVPSGEFLGYIVTERGI 230

Query: 350 EANPEQIRSLVEMPSPQTVKEVQRLAGRVAALNRFISKSSDKCRPLYKLLRNTTDFTWTT 171
           EAN  QI + + MPSP+  KEVQRL GR+AALNRFIS+S+DK  P Y++L+    F W  
Sbjct: 231 EANSNQINAFLNMPSPRNFKEVQRLTGRIAALNRFISRSTDKSLPFYQILKGNKGFLWDE 290

Query: 170 ECEQAFQGLKRYLEGTPLLSQPEEGEKLYLYLGVTDYAISSVLVRVVDKIERPVYF 3
           +CE+AF  LK YL   P+LS+PE  EKLYLY+ V+++A+S VLVR     ++P+Y+
Sbjct: 291 KCEEAFGQLKAYLTTPPILSKPEVDEKLYLYVSVSNHAVSGVLVREDRGEQKPIYY 346


>gb|AFU25705.1| gag-pol precursor [Castanea mollissima]
          Length = 1106

 Score =  205 bits (522), Expect = 3e-51
 Identities = 95/176 (53%), Positives = 130/176 (73%)
 Frame = -1

Query: 530 IEIYIDDMVEKSMSEQEHLEGLKETFQILRTHNLKLNPEKCTFGVTTGKFLGYIVTQRGI 351
           +E YIDDMV KS    +HL+ L ETF +LR H L+LN  KC+FGV +GKFLGY++T RGI
Sbjct: 243 MEAYIDDMVIKSKKVGDHLKDLHETFSVLRKHKLRLNASKCSFGVDSGKFLGYMITHRGI 302

Query: 350 EANPEQIRSLVEMPSPQTVKEVQRLAGRVAALNRFISKSSDKCRPLYKLLRNTTDFTWTT 171
           E NP+QI++++E+  P+  KEVQ+LAG  A LNRFIS+S+D+CRP Y+LL    DF WT 
Sbjct: 303 EFNPDQIKAILELHPPRNPKEVQKLAGMFAVLNRFISRSADRCRPFYRLLHKWKDFLWTD 362

Query: 170 ECEQAFQGLKRYLEGTPLLSQPEEGEKLYLYLGVTDYAISSVLVRVVDKIERPVYF 3
           EC  AF+ L++YL    +LS+PE+ E LY YL V +YA+S VL+R  D +++P+Y+
Sbjct: 363 ECNLAFEDLRQYLANPLILSRPEKKEVLYAYLAVMNYAVSLVLIRNDDGVQKPIYY 418


>gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
          Length = 1859

 Score =  193 bits (490), Expect = 2e-47
 Identities = 88/176 (50%), Positives = 129/176 (73%)
 Frame = -1

Query: 530  IEIYIDDMVEKSMSEQEHLEGLKETFQILRTHNLKLNPEKCTFGVTTGKFLGYIVTQRGI 351
            +E+Y+DD+V KS S ++H+  LKE FQ LR + ++LNPEKC FGV  GKFLG+++T RGI
Sbjct: 1051 VEVYVDDIVVKSDSCEQHVSDLKEVFQALRQYRMRLNPEKCAFGVEGGKFLGFMLTHRGI 1110

Query: 350  EANPEQIRSLVEMPSPQTVKEVQRLAGRVAALNRFISKSSDKCRPLYKLLRNTTDFTWTT 171
            EANPE+ +++ EM SP+ +KE+QRL  R+ +L+RF+ K +++ RP+ KLL+ T+ F WT 
Sbjct: 1111 EANPEKCKAITEMRSPKGLKEIQRLVSRLTSLSRFVPKLAERTRPIIKLLKKTSKFEWTD 1170

Query: 170  ECEQAFQGLKRYLEGTPLLSQPEEGEKLYLYLGVTDYAISSVLVRVVDKIERPVYF 3
            ECEQ FQ LK +L   P++ +P   E + +YL V++ A+SS LV+ +   ERPVYF
Sbjct: 1171 ECEQNFQQLKAFLASPPVIQKPNAREPIVVYLAVSNEAVSSALVQEIKAEERPVYF 1226