BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00015343
         (655 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280704.1| PREDICTED: chloroplastic group IIA intron sp...   141   9e-32
ref|XP_002516757.1| conserved hypothetical protein [Ricinus comm...   114   2e-23
ref|XP_002329296.1| predicted protein [Populus trichocarpa] gi|2...   112   6e-23
ref|XP_002871707.1| ATCRS1/CRS1 [Arabidopsis lyrata subsp. lyrat...   106   3e-21
ref|NP_197122.2| ortholog of maize chloroplast splicing factor C...   106   4e-21

>ref|XP_002280704.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like [Vitis vinifera]
          Length = 1184

 Score =  141 bits (356), Expect = 9e-32
 Identities = 86/199 (43%), Positives = 113/199 (56%), Gaps = 6/199 (3%)
 Frame = +2

Query: 74  KILSFQKP--NTPSTQFINPKFSFLSEQSLLKKNEDVKMPTAPWMKGPLLLPADNVLDLR 247
           +I SF+ P  +  +T   N     +S Q +   +  +KMPTAPWMKGPLLL  + VLDL 
Sbjct: 37  RIHSFKPPPISATTTATTNHPDHSISSQPVSGTDAAIKMPTAPWMKGPLLLQPNEVLDLS 96

Query: 248 EASNKRSIKKDNDVERSDRSLTDKVSGRRGKQVMKKIVHSVTKLERFHSFKXXXXXXXXX 427
           +A  K+ +      E+ DRSLT+KVSG RG + MKKI+ S+ KL+  H+           
Sbjct: 97  KARPKK-VAGSAGAEKPDRSLTEKVSGGRGAKAMKKIMQSIVKLQETHTSDETQENTEEF 155

Query: 428 XVPLVCK----DGNVKYRGKMPWAKVERFVFRRMKKEKVKTAAXXXXXXXXXXXXXXDAV 595
              +  +    D N +  GKMPW K E+ VFRR KKEKV TAA              +AV
Sbjct: 156 EFGVSLEGIGGDENSRIGGKMPWLKTEKVVFRRTKKEKVVTAAELTLDPMLLERLRGEAV 215

Query: 596 KMTQWVKVKKAGVTQAVVD 652
           KM +WVKVKKAGVT++VVD
Sbjct: 216 KMRKWVKVKKAGVTESVVD 234


>ref|XP_002516757.1| conserved hypothetical protein [Ricinus communis]
           gi|223544130|gb|EEF45655.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 742

 Score =  114 bits (284), Expect = 2e-23
 Identities = 78/230 (33%), Positives = 118/230 (51%), Gaps = 16/230 (6%)
 Frame = +2

Query: 11  LYFSISSFNTLQKPYNSSKHFKILS-FQKPNTPSTQFINPKFSFLSEQSLLKKNEDVKMP 187
           L+    S+N +    N + +   L+  Q P   + +  N +F+ LS  +  + N  +K+P
Sbjct: 5   LFLQFFSYNPIASSLNPATNKSSLNNAQNPKFATNK--NTEFTLLSVPNS-QSNAPIKVP 61

Query: 188 TAPWMKGPLLLPADNVLDLREASNKRSIKKDNDVERSDRSLTDKVSGRRGKQVMKKIVHS 367
           TAPWMKGPLLL    +++L +  NK S    N +E+SD+ LT K SG RGK+ M+KIV S
Sbjct: 62  TAPWMKGPLLLQPHELINLSKPRNKNSSNNAN-IEKSDKVLTGKESGVRGKKAMEKIVKS 120

Query: 368 VTKLERFHSFKXXXXXXXXXX--------------VPLVCKDGNVKYRGKM-PWAKVERF 502
           + +L+   + +                        + L+ + G+     K+ PW + E+F
Sbjct: 121 IEQLQENQALEKTQCDSQAYEKTQLDSEAFEIGEKLGLIREHGDFGVNKKLKPWEREEKF 180

Query: 503 VFRRMKKEKVKTAAXXXXXXXXXXXXXXDAVKMTQWVKVKKAGVTQAVVD 652
           V+ R+KKEK  T A              +A KM +WVKV KAGVTQ+VVD
Sbjct: 181 VYWRIKKEKAVTKAELILEKELLEILRTEASKMRKWVKVMKAGVTQSVVD 230


>ref|XP_002329296.1| predicted protein [Populus trichocarpa] gi|222870750|gb|EEF07881.1|
           predicted protein [Populus trichocarpa]
          Length = 687

 Score =  112 bits (280), Expect = 6e-23
 Identities = 67/161 (41%), Positives = 93/161 (57%), Gaps = 1/161 (0%)
 Frame = +2

Query: 173 DVKMPTAPWMKGPLLLPADNVLDLREASNKRSIKKDNDVERSDRSLTDKVSGRRGKQVMK 352
           +VK+PT PW+KGPL+L    +L+L    NK+ IK D  +E+ D++LT K SG RG + M 
Sbjct: 25  NVKVPTPPWIKGPLILQPHELLNLTNPKNKKPIKNDK-IEKDDKALTAKESGVRGNKAMI 83

Query: 353 KIVHSVTKLERFHSFKXXXXXXXXXXVPLVCKDGNVKYRGK-MPWAKVERFVFRRMKKEK 529
           +IV SV +L+R  + K             + ++G + +R K +PW + ER    RMKKEK
Sbjct: 84  QIVKSVERLQRDENLKDTQE---------ISENGVLGFREKKLPWVREERVGNWRMKKEK 134

Query: 530 VKTAAXXXXXXXXXXXXXXDAVKMTQWVKVKKAGVTQAVVD 652
           V + A              +A KM  WVKVKKAGVTQ+VVD
Sbjct: 135 VVSKAELSLDKELLERLRGEAAKMRTWVKVKKAGVTQSVVD 175


>ref|XP_002871707.1| ATCRS1/CRS1 [Arabidopsis lyrata subsp. lyrata]
           gi|297317544|gb|EFH47966.1| ATCRS1/CRS1 [Arabidopsis
           lyrata subsp. lyrata]
          Length = 727

 Score =  106 bits (265), Expect = 3e-21
 Identities = 72/198 (36%), Positives = 104/198 (52%), Gaps = 6/198 (3%)
 Frame = +2

Query: 77  ILSFQKPN-TPSTQFINPKFSFLSEQSLLKKNEDVKMPTAPWMKGPLLLPADNVLDLREA 253
           I S   PN  PS    +P+F    E+  L  +  +K+PTAPWMKGPLLL  D ++D  + 
Sbjct: 17  INSSLNPNQNPSNAAKSPQFDQFREKRGLS-DAAMKVPTAPWMKGPLLLRPDEIVDTEKR 75

Query: 254 SNKRSIKKDNDVERSDRSLTDKVSGRRGKQVMKKIVHSVTKLERFHSFKXXXXXXXXXXV 433
           +  R ++     E++ ++L  + SG RGK+ MKKIV +V KL+     +           
Sbjct: 76  NKPRKVE-----EKTFKALNRRESGVRGKKAMKKIVRNVEKLDEGSDSEETHMDDLSEFE 130

Query: 434 PLVCKDGNV----KYRGKMPWAKVE-RFVFRRMKKEKVKTAAXXXXXXXXXXXXXXDAVK 598
            L      +    ++ GKMPW + E RF+ RRMKKE+V T A              +A K
Sbjct: 131 YLGRISEKIESKDRFGGKMPWDREEERFIMRRMKKERVPTTAELILDEGLLNRLRREASK 190

Query: 599 MTQWVKVKKAGVTQAVVD 652
           M +WV V+KAGVT+ VV+
Sbjct: 191 MRKWVNVRKAGVTETVVN 208


>ref|NP_197122.2| ortholog of maize chloroplast splicing factor CRS1 [Arabidopsis
           thaliana] gi|374095377|sp|Q9LF10.2|CRS1_ARATH RecName:
           Full=Chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
           splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
           SPLICING 1; Flags: Precursor gi|332004875|gb|AED92258.1|
           ortholog of maize chloroplast splicing factor CRS1
           [Arabidopsis thaliana]
          Length = 720

 Score =  106 bits (264), Expect = 4e-21
 Identities = 64/164 (39%), Positives = 91/164 (55%), Gaps = 5/164 (3%)
 Frame = +2

Query: 176 VKMPTAPWMKGPLLLPADNVLDLREASNKRSIKKDNDVERSDRSLTDKVSGRRGKQVMKK 355
           +K+PTAPWMKGPLLL  D +LD ++ +  R ++     E++ ++L  + SG RGK+ MKK
Sbjct: 81  IKVPTAPWMKGPLLLRPDEILDTKKRNKPRKVE-----EKTFKALNRRESGVRGKKAMKK 135

Query: 356 IVHSVTKLERFHSFKXXXXXXXXXXVPLVCKDGNV----KYRGKMPWAKVE-RFVFRRMK 520
           IV +V KL+     +            L   +  V    ++ GKMPW + E RF+ RRMK
Sbjct: 136 IVRNVEKLDEDSDSEETQMDDLSEFEYLGRIEEKVESKDRFGGKMPWEREEERFILRRMK 195

Query: 521 KEKVKTAAXXXXXXXXXXXXXXDAVKMTQWVKVKKAGVTQAVVD 652
           KE V T A              +A KM +WV V+KAGVT+ VV+
Sbjct: 196 KESVPTTAELILDEGLLNRLRREASKMRKWVNVRKAGVTELVVN 239