BLASTX nr result
ID: Coptis23_contig00015228
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00015228
(1823 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris] 639 0.0
emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera] 599 e-169
emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group] 536 e-150
gb|ABF98853.1| retrotransposon protein, putative, Ty1-copia subc... 536 e-150
gb|AAK71544.1|AC087852_4 putative polyprotein [Oryza sativa Japo... 536 e-150
>gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]
Length = 1290
Score = 639 bits (1649), Expect = 0.0
Identities = 336/610 (55%), Positives = 433/610 (70%), Gaps = 4/610 (0%)
Frame = -2
Query: 1819 EGDDIIAAVVSQVFMATGKKNWVLDSGATRHVCGDVEAFSDYILVKD--EKVYMGDSRSV 1646
EG+D I AVVSQV + T WV+DSGATRH+C + F+ Y V D E+VY+GDSR+
Sbjct: 301 EGEDTIVAVVSQVNLVTNVSKWVVDSGATRHICANRNVFTSYTSVGDGEEQVYLGDSRTT 360
Query: 1645 PVEXXXXXXXXXXXXXXXXXSNVLHVPEIRQNLISVSLLGKAGVKVTFESDKFVLTKNEG 1466
PV ++VLHVP IR NL+SV+LL K GVKV+FESDK V+TKN
Sbjct: 361 PVLGKGKVLLKLTSGKTLALNDVLHVPSIRVNLVSVALLSKVGVKVSFESDKIVITKNNV 420
Query: 1465 FVGKGYCNNSGLFMLNVLDNIIINKNESASTYLLDSFNIWHGRLGHVNVQYMKRMKACGL 1286
FVGKGYC+ GLF+LN+ + I+N++ S S Y++DS++IWH RLGHVN Y+ +++ GL
Sbjct: 421 FVGKGYCDQ-GLFVLNISE--IMNESTS-SAYIVDSYDIWHARLGHVNSSYVIKLQRLGL 476
Query: 1285 LSDISDFSNDKCEICAETKATKKPCRTVSRDKTGLLTLIHTDLGEFRSTMSRGGKFYYIT 1106
++ + D + KC+ +L LIHTDL + + TMSRGGK Y++T
Sbjct: 477 IN-MHDKESSKCD--------------------KILGLIHTDLADLKQTMSRGGKNYFVT 515
Query: 1105 FIDDFSRYTMVYLLRNKHEAGEMFLKYKAEVENQLDCKIKRLRSDRGGEYESNPFQDFCD 926
FIDDFSRYT VYL+++K EA +MFL YKAEVENQL+ KIKR+RSDRGGEY F D+C
Sbjct: 516 FIDDFSRYTKVYLIKHKDEAFDMFLTYKAEVENQLNKKIKRIRSDRGGEYVL--FNDYCV 573
Query: 925 KNGIIHETTPPYSPESNGVAERKNRTLKEMMNAMLVSSGASLNLWGEAILSACHILNRXX 746
K GIIHE TPPYSPESNGVAERKNRTLKEMMNAML+SS A NLWGE++L+AC +
Sbjct: 574 KEGIIHEVTPPYSPESNGVAERKNRTLKEMMNAMLISSNAPDNLWGESLLTACFL----- 628
Query: 745 XXXXXXAILSACHIQNRIPNKKTGNKTPYELWKGHVPTLTYLKMWGCLAKVLVNEPKKRK 566
QNRIP++KTG KTPYELWKG+ P L YL++WG LAKV++ +PKKRK
Sbjct: 629 --------------QNRIPHRKTG-KTPYELWKGYQPNLKYLRVWGSLAKVMLPDPKKRK 673
Query: 565 LGPRTVDCMFIGYAHNSAAYRFLVVKSDNNLVDANTIIESKNADFFENLFPLKIGIERLV 386
+G +T DCMF+GYA +SAAYRFLV+ SD +++ NTI+E+KNA+FFE++FPLK
Sbjct: 674 IGSKTSDCMFLGYAEHSAAYRFLVLNSD--IIERNTIVETKNAEFFEHIFPLKS------ 725
Query: 385 APTGQQSTDP--EFSEQEIRKSKRDRKSTNFGDDFYTFLLDDDPVTYNEAISSRDAPFWK 212
+ T +Q D + +++R+SKR RK T+FG+DFYT+L+++DP+++ EA S+ DA W
Sbjct: 726 SGTSEQPIDSVSDTLSEDVRRSKRQRKETSFGNDFYTYLVENDPISFVEATSAPDAKHWD 785
Query: 211 DAIHSELDSIIANHTWEIVDLPPGAKPIRYKWIFKKKLKLDGSIEKYKARLVVKGFSQQK 32
AI +EL+SI N+TW +VDLP GAKPI KWIFKKK DGSIEKYKARLV KGF+Q+
Sbjct: 786 KAIKTELESIKKNNTWTLVDLPKGAKPIGCKWIFKKKYHPDGSIEKYKARLVAKGFTQKH 845
Query: 31 GIDYFDTYAP 2
IDYFDT+AP
Sbjct: 846 NIDYFDTFAP 855
>emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]
Length = 1316
Score = 599 bits (1544), Expect = e-169
Identities = 315/605 (52%), Positives = 419/605 (69%), Gaps = 4/605 (0%)
Frame = -2
Query: 1804 IAAVVSQV-FMATGKKNWVLDSGATRHVCGDVEAFSDYILVKD-EKVYMGDSRSVPVEXX 1631
+ AVVS+V + + K W +D+GATRHVC D + FS + +++ EKV+MG+S + ++
Sbjct: 319 LTAVVSEVNLVGSNPKEWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSATSEIKGQ 378
Query: 1630 XXXXXXXXXXXXXXXSNVLHVPEIRQNLISVSLLGKAGVKVTFESDKFVLTKNEGFVGKG 1451
+NVL+VPEIR+NL+S SLL G ++ F S+K VL+K+ +VGKG
Sbjct: 379 GKVILKMTSGKELTLTNVLYVPEIRKNLVSGSLLNNHGFRLVFXSNKVVLSKSGMYVGKG 438
Query: 1450 YCNNSGLFMLNVLDNIIINKNE-SASTYLLDSFNIWHGRLGHVNVQYMKRMKACGLLSDI 1274
Y ++ G++ LNV+ I N N+ S STY+L+S N+WHGRLGHVN ++R+ +
Sbjct: 439 YMSD-GMWKLNVMTIIKSNMNKASTSTYMLESSNLWHGRLGHVNYDTLRRLINLNHIPTF 497
Query: 1273 SDFSNDKCEICAETKATKKPCRTVSRDKTGLLTLIHTDLGEFRSTMSRGGKFYYITFIDD 1094
SN KCE C E K T+ ++V R+ T L LIH+D+ + + +RGG Y+ITF+DD
Sbjct: 498 QINSNHKCETCVEAKLTRSSFQSVERN-TEPLDLIHSDICDLKFVQTRGGNKYFITFVDD 556
Query: 1093 FSRYTMVYLLRNKHEAGEMFLKYKAEVENQLDCKIKRLRSDRGGEYESNPFQDFCDKNGI 914
++Y VYLL++K EA E F+ YK EVENQL+ KIK LRSDRGGEYES PF D C ++GI
Sbjct: 557 STKYCYVYLLKSKDEAIEKFVLYKTEVENQLNKKIKVLRSDRGGEYES-PFVDICAQHGI 615
Query: 913 IHETTPPYSPESNGVAERKNRTLKEMMNAMLVSSGASLNLWGEAILSACHILNRXXXXXX 734
IHETT PYSP+SNGVAERKNRTLKEMMNAML+SS N+WGEAIL+A ++L
Sbjct: 616 IHETTAPYSPQSNGVAERKNRTLKEMMNAMLISSSLPQNMWGEAILTANYLL-------- 667
Query: 733 XXAILSACHIQNRIPNKKTGNKTPYELWKGHVPTLTYLKMWGCLAKVLVNEPKKRKLGPR 554
N++P KK KTPYELWKG P+ TYL+MWGCLAKV V PKK K+GP+
Sbjct: 668 -----------NKVPKKK-AEKTPYELWKGRKPSYTYLRMWGCLAKVAVPPPKKVKIGPK 715
Query: 553 TVDCMFIGYAHNSAAYRFLVVKSDNNLVDANTIIESKNADFFENLFPLKIGIERLVAPTG 374
T+DC+FIGYAHNS AYRFLV +S+ + NTI+ES+NA FFE++FP K E +
Sbjct: 716 TIDCIFIGYAHNSNAYRFLVYESNIPDIHKNTIMESRNASFFEDVFPCKSKEEPSSSKRM 775
Query: 373 QQSTDP-EFSEQEIRKSKRDRKSTNFGDDFYTFLLDDDPVTYNEAISSRDAPFWKDAIHS 197
+S D E E E R+SKR R +FG DF TF+L+ +P T+ EA++S + WK+AI S
Sbjct: 776 LESQDQNEEVEVEPRRSKRVRTEKSFGPDFLTFMLEGEPQTFKEAVNSTEGLMWKEAIKS 835
Query: 196 ELDSIIANHTWEIVDLPPGAKPIRYKWIFKKKLKLDGSIEKYKARLVVKGFSQQKGIDYF 17
E+DSI+ NHTWE+VDLPPG KP+ KWIFK+K+K+DGSI+KYKARLV+KG+ Q +G+DYF
Sbjct: 836 EIDSILQNHTWELVDLPPGCKPLSSKWIFKRKMKVDGSIDKYKARLVIKGYRQTEGLDYF 895
Query: 16 DTYAP 2
DTY+P
Sbjct: 896 DTYSP 900
>emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]
Length = 1320
Score = 536 bits (1382), Expect = e-150
Identities = 281/609 (46%), Positives = 383/609 (62%), Gaps = 15/609 (2%)
Frame = -2
Query: 1783 VFMATGKKNWVLDSGATRHVCGDVEAFSDYILVKDEKVYMGDSRSVPVEXXXXXXXXXXX 1604
VF NW +D+GA HVC D+ FS Y + + V MG+ V
Sbjct: 291 VFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTS 350
Query: 1603 XXXXXXSNVLHVPEIRQNLISVSLLGKAGVKVTFESDKFVLTKNEGFVGKGYCNNSGLFM 1424
NV HVP I +NL+S S L + G K+ FES+K V++K+ F+GKGY GLF
Sbjct: 351 GKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGY-ECGGLFR 409
Query: 1423 LNVLDNIIINKNESASTYLLDSFNIWHGRLGHVNVQYMKRMKACGLLSDISDFSNDKCEI 1244
++ D + N + + D N+WH RL H+N M R+ + L+ S KC
Sbjct: 410 FSLSDFCNKSVNHICGS-VDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHS 468
Query: 1243 CAETKATKKPCRTVSRDKTGLLTLIHTDLGEFRSTMSRGGKFYYITFIDDFSRYTMVYLL 1064
C ++K +KP + L L+H+DL E +++GGK Y++TFIDD +R+ VYLL
Sbjct: 469 CVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLL 528
Query: 1063 RNKHEAGEMFLKYKAEVENQLDCKIKRLRSDRGGEYESNPFQDFCDKNGIIHETTPPYSP 884
+ K EA + F YKAEVENQLD KIKRLRSDRGGE+ SN F FC+++GIIHE TPPYSP
Sbjct: 529 KTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSP 588
Query: 883 ESNGVAERKNRTLKEMMNAMLVSSGASLNLWGEAILSACHILNRXXXXXXXXAILSACHI 704
ESNG+AERKNRTL +++NAML ++G WGEA+L++ H+L
Sbjct: 589 ESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVL------------------ 630
Query: 703 QNRIPNKKTGNKTPYELWKGHVPTLTYLKMWGCLAKVLVNEPKKRKLGPRTVDCMFIGYA 524
NR+PN+ +KTPYE+W G P+L+YL++WGCLAKV V KKRKLGP+TVDC+F+GYA
Sbjct: 631 -NRVPNRNK-DKTPYEIWIGRKPSLSYLRIWGCLAKVNVPITKKRKLGPKTVDCVFLGYA 688
Query: 523 HNSAAYRFLVVKSDNNLVDANTIIESKNADFFENLFPLK-----------IGIERLVAPT 377
H+S AYRFL+VKS+ + TIIES++A FFE+ FP+K I + P
Sbjct: 689 HHSIAYRFLIVKSEVLDMHVGTIIESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPE 748
Query: 376 GQQSTDPEFSEQEI----RKSKRDRKSTNFGDDFYTFLLDDDPVTYNEAISSRDAPFWKD 209
+ T SE+++ R+SKR R + +FGDDF +L+DD P + +EA +S DA +WK+
Sbjct: 749 QTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKE 808
Query: 208 AIHSELDSIIANHTWEIVDLPPGAKPIRYKWIFKKKLKLDGSIEKYKARLVVKGFSQQKG 29
A+ SE+DSIIAN TWE+ + P G KP+ KW+FKKKL+ DG+IEKYKARLV KG++Q++G
Sbjct: 809 AVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEG 868
Query: 28 IDYFDTYAP 2
D+FDTY+P
Sbjct: 869 EDFFDTYSP 877
>gb|ABF98853.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1320
Score = 536 bits (1380), Expect = e-150
Identities = 280/609 (45%), Positives = 382/609 (62%), Gaps = 15/609 (2%)
Frame = -2
Query: 1783 VFMATGKKNWVLDSGATRHVCGDVEAFSDYILVKDEKVYMGDSRSVPVEXXXXXXXXXXX 1604
VF NW +D+GA HVC D+ FS Y + + V MG+ V
Sbjct: 291 VFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTS 350
Query: 1603 XXXXXXSNVLHVPEIRQNLISVSLLGKAGVKVTFESDKFVLTKNEGFVGKGYCNNSGLFM 1424
NV HVP I +NL+S S L + G K+ FES+K V++K+ F+GKGY GLF
Sbjct: 351 GKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGY-ECGGLFR 409
Query: 1423 LNVLDNIIINKNESASTYLLDSFNIWHGRLGHVNVQYMKRMKACGLLSDISDFSNDKCEI 1244
++ D + N + + D N+WH RL H+N M R+ + L+ S KC
Sbjct: 410 FSLSDFCNKSVNHICGS-VDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHS 468
Query: 1243 CAETKATKKPCRTVSRDKTGLLTLIHTDLGEFRSTMSRGGKFYYITFIDDFSRYTMVYLL 1064
C ++K +KP + L L+H+DL E +++GGK Y++T IDD +R+ VYLL
Sbjct: 469 CVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLL 528
Query: 1063 RNKHEAGEMFLKYKAEVENQLDCKIKRLRSDRGGEYESNPFQDFCDKNGIIHETTPPYSP 884
+ K EA + F YKAEVENQLD KIKRLRSDRGGE+ SN F FC+++GIIHE TPPYSP
Sbjct: 529 KTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSP 588
Query: 883 ESNGVAERKNRTLKEMMNAMLVSSGASLNLWGEAILSACHILNRXXXXXXXXAILSACHI 704
ESNG+AERKNRTL +++NAML ++G WGEA+L++ H+L
Sbjct: 589 ESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVL------------------ 630
Query: 703 QNRIPNKKTGNKTPYELWKGHVPTLTYLKMWGCLAKVLVNEPKKRKLGPRTVDCMFIGYA 524
NR+PN+ +KTPYE+W G P+L+YL+ WGCLAKV V KKRKLGP+TVDC+F+GYA
Sbjct: 631 -NRVPNRNK-DKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYA 688
Query: 523 HNSAAYRFLVVKSDNNLVDANTIIESKNADFFENLFPLK-----------IGIERLVAPT 377
H+S AYRFL+VKS+ + TI+ES++A FFE+ FP+K I + P
Sbjct: 689 HHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHNGSNQPSEIIPSSITPPE 748
Query: 376 GQQSTDPEFSEQEI----RKSKRDRKSTNFGDDFYTFLLDDDPVTYNEAISSRDAPFWKD 209
+ T SE+++ R+SKR R + +FGDDF +L+DD P + +EA +S DA +WK+
Sbjct: 749 QTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKE 808
Query: 208 AIHSELDSIIANHTWEIVDLPPGAKPIRYKWIFKKKLKLDGSIEKYKARLVVKGFSQQKG 29
A+HSE+DSIIAN TWE+ + P G KP+ KW+FKKKL+ DG+IEKYKARLV KG++Q++G
Sbjct: 809 AVHSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEG 868
Query: 28 IDYFDTYAP 2
D+FDTY+P
Sbjct: 869 EDFFDTYSP 877
>gb|AAK71544.1|AC087852_4 putative polyprotein [Oryza sativa Japonica Group]
Length = 1308
Score = 536 bits (1380), Expect = e-150
Identities = 280/609 (45%), Positives = 382/609 (62%), Gaps = 15/609 (2%)
Frame = -2
Query: 1783 VFMATGKKNWVLDSGATRHVCGDVEAFSDYILVKDEKVYMGDSRSVPVEXXXXXXXXXXX 1604
VF NW +D+GA HVC D+ FS Y + + V MG+ V
Sbjct: 291 VFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLKFTS 350
Query: 1603 XXXXXXSNVLHVPEIRQNLISVSLLGKAGVKVTFESDKFVLTKNEGFVGKGYCNNSGLFM 1424
NV HVP I +NL+S S L + G K+ FES+K V++K+ F+GKGY GLF
Sbjct: 351 GKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGY-ECGGLFR 409
Query: 1423 LNVLDNIIINKNESASTYLLDSFNIWHGRLGHVNVQYMKRMKACGLLSDISDFSNDKCEI 1244
++ D + N + + D N+WH RL H+N M R+ + L+ S KC
Sbjct: 410 FSLSDFCNKSVNHICGS-VDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHS 468
Query: 1243 CAETKATKKPCRTVSRDKTGLLTLIHTDLGEFRSTMSRGGKFYYITFIDDFSRYTMVYLL 1064
C ++K +KP + L L+H+DL E +++GGK Y++T IDD +R+ VYLL
Sbjct: 469 CVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLL 528
Query: 1063 RNKHEAGEMFLKYKAEVENQLDCKIKRLRSDRGGEYESNPFQDFCDKNGIIHETTPPYSP 884
+ K EA + F YKAEVENQLD KIKRLRSDRGGE+ SN F FC+++GIIHE TPPYSP
Sbjct: 529 KTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSP 588
Query: 883 ESNGVAERKNRTLKEMMNAMLVSSGASLNLWGEAILSACHILNRXXXXXXXXAILSACHI 704
ESNG+AERKNRTL +++NAML ++G WGEA+L++ H+L
Sbjct: 589 ESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVL------------------ 630
Query: 703 QNRIPNKKTGNKTPYELWKGHVPTLTYLKMWGCLAKVLVNEPKKRKLGPRTVDCMFIGYA 524
NR+PN+ +KTPYE+W G P+L+YL+ WGCLAKV V KKRKLGP+TVDC+F+GYA
Sbjct: 631 -NRVPNRNK-DKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYA 688
Query: 523 HNSAAYRFLVVKSDNNLVDANTIIESKNADFFENLFPLK-----------IGIERLVAPT 377
H+S AYRFL+VKS+ + TI+ES++A FFE+ FP+K I + P
Sbjct: 689 HHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHNGSNQPSEIIPSSITPPE 748
Query: 376 GQQSTDPEFSEQEI----RKSKRDRKSTNFGDDFYTFLLDDDPVTYNEAISSRDAPFWKD 209
+ T SE+++ R+SKR R + +FGDDF +L+DD P + +EA +S DA +WK+
Sbjct: 749 QTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKE 808
Query: 208 AIHSELDSIIANHTWEIVDLPPGAKPIRYKWIFKKKLKLDGSIEKYKARLVVKGFSQQKG 29
A+HSE+DSIIAN TWE+ + P G KP+ KW+FKKKL+ DG+IEKYKARLV KG++Q++G
Sbjct: 809 AVHSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEG 868
Query: 28 IDYFDTYAP 2
D+FDTY+P
Sbjct: 869 EDFFDTYSP 877