BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00015216
         (816 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_850047.1| Ribosomal protein L35 [Arabidopsis thaliana] gi...    90   6e-20
emb|CAA60774.1| ribosomal protein L35 [Arabidopsis thaliana]           90   6e-20
sp|P23326.1|RK35_SPIOL RecName: Full=50S ribosomal protein L35, ...    94   1e-19
ref|XP_004146668.1| PREDICTED: 50S ribosomal protein L35, chloro...    89   1e-17
gb|AFW76176.1| hypothetical protein ZEAMMB73_382863 [Zea mays]         95   2e-17

>ref|NP_850047.1| Ribosomal protein L35 [Arabidopsis thaliana]
           gi|17529002|gb|AAL38711.1| putative chloroplast
           ribosomal protein L35 [Arabidopsis thaliana]
           gi|20465445|gb|AAM20182.1| putative chloroplast
           ribosomal protein L35 [Arabidopsis thaliana]
           gi|330252434|gb|AEC07528.1| Ribosomal protein L35
           [Arabidopsis thaliana]
          Length = 145

 Score = 90.1 bits (222), Expect(2) = 6e-20
 Identities = 44/54 (81%), Positives = 49/54 (90%)
 Frame = -1

Query: 471 GNGKIVRRRARKQHLLAKKNAKRRNRLSKMVQVHKSDYDNVIGALPYLKVNRKA 310
           G GKIVRRR+ KQHLLAKKN KR+ RLSKM +V++SDYDNVIGALPYLKVNRKA
Sbjct: 91  GRGKIVRRRSGKQHLLAKKNNKRKLRLSKMTEVNRSDYDNVIGALPYLKVNRKA 144



 Score = 33.9 bits (76), Expect(2) = 6e-20
 Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = -2

Query: 725 SRSFHFSLSHNKTLSLNLSSSQTISGFHPVLPIKLSP-----PQNTPSFTVFA 582
           S S   SL  +   + +LSSS +ISG   VLP+K+S       Q   SFTVFA
Sbjct: 19  SSSPKVSLRSSVHFATSLSSSHSISGLRAVLPLKISTVASPNSQKLHSFTVFA 71


>emb|CAA60774.1| ribosomal protein L35 [Arabidopsis thaliana]
          Length = 140

 Score = 90.1 bits (222), Expect(2) = 6e-20
 Identities = 44/54 (81%), Positives = 49/54 (90%)
 Frame = -1

Query: 471 GNGKIVRRRARKQHLLAKKNAKRRNRLSKMVQVHKSDYDNVIGALPYLKVNRKA 310
           G GKIVRRR+ KQHLLAKKN KR+ RLSKM +V++SDYDNVIGALPYLKVNRKA
Sbjct: 86  GRGKIVRRRSGKQHLLAKKNNKRKLRLSKMTEVNRSDYDNVIGALPYLKVNRKA 139



 Score = 33.9 bits (76), Expect(2) = 6e-20
 Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = -2

Query: 725 SRSFHFSLSHNKTLSLNLSSSQTISGFHPVLPIKLSP-----PQNTPSFTVFA 582
           S S   SL  +   + +LSSS +ISG   VLP+K+S       Q   SFTVFA
Sbjct: 14  SSSPKVSLRSSVHFATSLSSSHSISGLRAVLPLKISTVASPNSQKLHSFTVFA 66


>sp|P23326.1|RK35_SPIOL RecName: Full=50S ribosomal protein L35, chloroplastic; AltName:
           Full=CL35; Flags: Precursor gi|189096153|pdb|3BBO|5
           Chain 5, Homology Model For The Spinach Chloroplast 50s
           Subunit Fitted To 9.4a Cryo-Em Map Of The 70s
           Chlororibosome gi|170139|gb|AAA34043.1| ribosomal
           protein L35 [Spinacia oleracea]
          Length = 159

 Score = 94.4 bits (233), Expect(2) = 1e-19
 Identities = 45/53 (84%), Positives = 49/53 (92%)
 Frame = -1

Query: 471 GNGKIVRRRARKQHLLAKKNAKRRNRLSKMVQVHKSDYDNVIGALPYLKVNRK 313
           G GKIVRRRA KQHLLAKKN KR+NRLSK++QV +SDYDNVIGALPYLKVNRK
Sbjct: 106 GKGKIVRRRAGKQHLLAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 158



 Score = 28.5 bits (62), Expect(2) = 1e-19
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
 Frame = -2

Query: 713 HFSLSHNKTLSLNLSSSQTISGFHPVL-------PIKLSPPQNTPSFTVFA 582
           HF+     TL+L+ SSS + S   P++        +  S   ++PSFTVFA
Sbjct: 36  HFNKQLKSTLNLSSSSSISSSKVQPIVLKNKRISTVDSSVSTSSPSFTVFA 86


>ref|XP_004146668.1| PREDICTED: 50S ribosomal protein L35, chloroplastic-like [Cucumis
           sativus] gi|449503151|ref|XP_004161859.1| PREDICTED: 50S
           ribosomal protein L35, chloroplastic-like [Cucumis
           sativus]
          Length = 151

 Score = 88.6 bits (218), Expect(2) = 1e-17
 Identities = 45/54 (83%), Positives = 47/54 (87%)
 Frame = -1

Query: 471 GNGKIVRRRARKQHLLAKKNAKRRNRLSKMVQVHKSDYDNVIGALPYLKVNRKA 310
           G GKIVRRRA KQHLL KKNAKRR RLSKM  V +SDYDNVIGALPYLKVNR+A
Sbjct: 97  GRGKIVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQA 150



 Score = 27.3 bits (59), Expect(2) = 1e-17
 Identities = 22/44 (50%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = -2

Query: 701 SHNKTLSLNLSSSQTISGF---HPVLPIKLSP-PQNTPSFTVFA 582
           S NK  SL LSSS  ISGF       P  +SP  Q    FTVFA
Sbjct: 34  SVNKVNSLKLSSSHNISGFGFNSLQKPSHISPTSQIRTPFTVFA 77


>gb|AFW76176.1| hypothetical protein ZEAMMB73_382863 [Zea mays]
          Length = 69

 Score = 95.1 bits (235), Expect = 2e-17
 Identities = 47/55 (85%), Positives = 49/55 (89%)
 Frame = -1

Query: 471 GNGKIVRRRARKQHLLAKKNAKRRNRLSKMVQVHKSDYDNVIGALPYLKVNRKAN 307
           G GKIVRR A KQHLLAKKN KR+ RLSKMVQV+KSDYDNV GALPYLKVNRKAN
Sbjct: 15  GRGKIVRRCAEKQHLLAKKNTKRKKRLSKMVQVNKSDYDNVTGALPYLKVNRKAN 69