BLASTX nr result
ID: Coptis23_contig00015200
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00015200
(1007 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002511313.1| pentatricopeptide repeat-containing protein,... 388 e-105
ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containi... 379 e-103
ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containi... 377 e-102
ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containi... 370 e-100
ref|XP_002877605.1| pentatricopeptide repeat-containing protein ... 350 4e-94
>ref|XP_002511313.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223550428|gb|EEF51915.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 627
Score = 388 bits (996), Expect = e-105
Identities = 189/318 (59%), Positives = 246/318 (77%), Gaps = 3/318 (0%)
Frame = -1
Query: 947 LTHETVCYVLKKLDKYPHKALDFFNWASVQNGFKPSLTVYSLMLRILGRKETIKEFWRLL 768
LTHETV YVLKKLDK PHKA DFFNW +NGFKPS +YSLMLRIL +K+++K FW L
Sbjct: 90 LTHETVIYVLKKLDKDPHKAWDFFNWVCDRNGFKPSSPLYSLMLRILVKKDSMKNFWITL 149
Query: 767 KRMKDEGCDIDEETYTTILIHFRCEKMTGDATGFSKYYKKMSEESATDATVKGITDLVLE 588
++MK++G DEETY TIL FR E+M DA F ++ +M EE+A D+ VK + +V
Sbjct: 150 RKMKEQGFYTDEETYLTILGVFRKERMDSDAVAFKHFFDRMVEENAMDSVVKNVVSVVSA 209
Query: 587 SDWNDDVVRKL---GEALSENFLLRVFRALRQHPLKAFIIFRWAEKHMGYNHDAVTYNGI 417
++W+++V ++L G L++NF++RV + LR +PLKA F WA K Y + +TYN I
Sbjct: 210 TEWSNEVEKELEGMGILLTDNFVIRVLKELRNYPLKALQFFNWAGKCERYECNTITYNAI 269
Query: 416 LRVLGQEDSIKEFWSVVKELKSAGHDMDIDTYIKLSRHFQKSRLMNDAVELYELMMDGPF 237
RVLG++DSI EFWSVV+E+K+AGH+MDIDTYIK+SR FQK++LM DAV+LYE MMDGPF
Sbjct: 270 ARVLGRDDSIGEFWSVVEEMKNAGHEMDIDTYIKISRQFQKNKLMGDAVKLYEFMMDGPF 329
Query: 236 KPSVQNCNTLLKQLSLTDTPDLSLVFRVVKKYEASGHTPSKAVYDGIHRSLTSVGRFDEA 57
KPSVQ+C+ LL+ +S ++ PDL+LVFRVV KYEA+G++ SKAVYDGIHRSLTS+G FDEA
Sbjct: 330 KPSVQDCSMLLRSISASNYPDLNLVFRVVNKYEATGNSLSKAVYDGIHRSLTSIGNFDEA 389
Query: 56 ENIVVTMRNAGYEPDNIT 3
++ M+ AGYEPDNIT
Sbjct: 390 AKMMKCMQTAGYEPDNIT 407
>ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
chloroplastic-like [Cucumis sativus]
gi|449524136|ref|XP_004169079.1| PREDICTED:
pentatricopeptide repeat-containing protein At3g48250,
chloroplastic-like [Cucumis sativus]
Length = 632
Score = 379 bits (972), Expect = e-103
Identities = 180/318 (56%), Positives = 245/318 (77%), Gaps = 3/318 (0%)
Frame = -1
Query: 947 LTHETVCYVLKKLDKYPHKALDFFNWASVQNGFKPSLTVYSLMLRILGRKETIKEFWRLL 768
LTHETV YVLK+LDK P KA +FFNWAS +NG S ++YS++LRI + E++K FW L
Sbjct: 85 LTHETVVYVLKRLDKQPQKASEFFNWASGKNGSTQSSSIYSMLLRIFVQNESMKLFWITL 144
Query: 767 KRMKDEGCDIDEETYTTILIHFRCEKMTGDATGFSKYYKKMSEESATDATVKGITDLVLE 588
+ MK+ G +DEETY TIL R K DATG + +Y +M +++A D+ V+ + D+VL
Sbjct: 145 RLMKERGFYLDEETYKTILGVLRKSKKAADATGLTHFYNRMLQQNAMDSVVQKVVDIVLG 204
Query: 587 SDWNDDV---VRKLGEALSENFLLRVFRALRQHPLKAFIIFRWAEKHMGYNHDAVTYNGI 417
SDW++DV + +LG ALS+NF++RV + LR PLKA F W Y+H+ V+YN I
Sbjct: 205 SDWSNDVPGKLEELGIALSDNFVIRVLKELRNSPLKALSFFHWVGCRPDYDHNTVSYNAI 264
Query: 416 LRVLGQEDSIKEFWSVVKELKSAGHDMDIDTYIKLSRHFQKSRLMNDAVELYELMMDGPF 237
RVLG++DSI+ FW V++E+K A H++DIDTYIK+SR FQKS++M +AV+LYELMMDGP+
Sbjct: 265 ARVLGRDDSIEAFWGVIEEMKHANHEIDIDTYIKISRQFQKSKMMGEAVKLYELMMDGPY 324
Query: 236 KPSVQNCNTLLKQLSLTDTPDLSLVFRVVKKYEASGHTPSKAVYDGIHRSLTSVGRFDEA 57
KPS+Q+C+ LL+ ++ +D PDLSLV+RV KK+EA+G++ SKA+YDGIHRSLTS G+FD+A
Sbjct: 325 KPSLQDCSVLLRTIAASDNPDLSLVYRVAKKFEATGYSLSKAMYDGIHRSLTSTGKFDDA 384
Query: 56 ENIVVTMRNAGYEPDNIT 3
ENIV +MRNAGYEPDN+T
Sbjct: 385 ENIVKSMRNAGYEPDNVT 402
Score = 56.6 bits (135), Expect = 9e-06
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Frame = -1
Query: 614 KGITDLVLESDWNDDV---VRKLGEALSENFLLRVFRALRQHPLKAFIIFRWAEKHMGYN 444
+ + LV +DW++ + + L L+ ++ V + L + P KA F WA G
Sbjct: 59 QSLLQLVSTNDWSEMLETELETLNPTLTHETVVYVLKRLDKQPQKASEFFNWASGKNGST 118
Query: 443 HDAVTYNGILRVLGQEDSIKEFWSVVKELKSAGHDMDIDTYIKLSRHFQKSRLMNDAVEL 264
+ Y+ +LR+ Q +S+K FW ++ +K G +D +TY + +KS+ DA L
Sbjct: 119 QSSSIYSMLLRIFVQNESMKLFWITLRLMKERGFYLDEETYKTILGVLRKSKKAADATGL 178
>ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
chloroplastic-like [Glycine max]
Length = 635
Score = 377 bits (967), Expect = e-102
Identities = 179/318 (56%), Positives = 235/318 (73%), Gaps = 3/318 (0%)
Frame = -1
Query: 947 LTHETVCYVLKKLDKYPHKALDFFNWASVQNGFKPSLTVYSLMLRILGRKETIKEFWRLL 768
+ HETV YV+K+LDK P KA FFNW + F+PS +VYSL++RIL K+T+K+FW L
Sbjct: 91 MPHETVLYVIKRLDKNPEKASCFFNWVCKKVWFRPSCSVYSLIVRILAAKDTMKQFWVTL 150
Query: 767 KRMKDEGCDIDEETYTTILIHFRCEKMTGDATGFSKYYKKMSEESATDATVKGITDLVLE 588
+ MK+ G +DEETY TI + F+ EKM D+ + +Y +M EE+A + V + ++
Sbjct: 151 RMMKENGFFLDEETYLTISVGFKREKMDSDSVALTHFYNRMLEENAMQSVVSNVVGIISR 210
Query: 587 SDWNDDVVRKLGEA---LSENFLLRVFRALRQHPLKAFIIFRWAEKHMGYNHDAVTYNGI 417
S+W D+VV +L + LS+NF++RV + LR+ PLKA+ F W K GY HD VTYN +
Sbjct: 211 SEWGDEVVGELAKLEIQLSDNFVIRVLKELRKTPLKAYKFFHWVGKQSGYEHDTVTYNAV 270
Query: 416 LRVLGQEDSIKEFWSVVKELKSAGHDMDIDTYIKLSRHFQKSRLMNDAVELYELMMDGPF 237
RVL + +SI+EFWSV++E+K GH++DIDTYIK++R Q++R+M DAV+LYELMMDG
Sbjct: 271 ARVLPRAESIEEFWSVIEEMKRVGHELDIDTYIKITRQLQRNRMMEDAVKLYELMMDGSC 330
Query: 236 KPSVQNCNTLLKQLSLTDTPDLSLVFRVVKKYEASGHTPSKAVYDGIHRSLTSVGRFDEA 57
KP VQ+CN LLK +S D P+L LVFRV KKYE++GHT SKA+YDGIHRSLTS G FDEA
Sbjct: 331 KPLVQDCNMLLKSISANDKPNLDLVFRVAKKYESTGHTLSKAIYDGIHRSLTSAGNFDEA 390
Query: 56 ENIVVTMRNAGYEPDNIT 3
ENIV TMRNAGYEPDNIT
Sbjct: 391 ENIVRTMRNAGYEPDNIT 408
Score = 89.7 bits (221), Expect = 1e-15
Identities = 87/347 (25%), Positives = 145/347 (41%), Gaps = 36/347 (10%)
Frame = -1
Query: 947 LTHETVCYVLKKLDKYPHKALDFFNWASVQNGFKPSLTVYSLMLRILGRKETIKEFWRLL 768
L+ V VLK+L K P KA FF+W Q+G++ Y+ + R+L R E+I+EFW ++
Sbjct: 228 LSDNFVIRVLKELRKTPLKAYKFFHWVGKQSGYEHDTVTYNAVARVLPRAESIEEFWSVI 287
Query: 767 KRMKDEGCDIDEETYTTILIHFRCEKMTGDATGFSKYYKKMSEESATDATVKGITDLVLE 588
+ MK G ++D +TY I + +M DA K Y+ M + S LV +
Sbjct: 288 EEMKRVGHELDIDTYIKITRQLQRNRMMEDAV---KLYELMMDGSCKP--------LVQD 336
Query: 587 SDWNDDVVRKLGEALSENFLLRVFRALRQHPLKAFIIFRWAEKHMGYNH--DAVTYNGIL 414
N LL+ A + L ++FR A+K+ H Y+GI
Sbjct: 337 C----------------NMLLKSISANDKPNLD--LVFRVAKKYESTGHTLSKAIYDGIH 378
Query: 413 RVLGQEDSIKEFWSVVKELKSAGHDMDIDTYIKLSRHFQKSRLMNDAVELYELMMDGPFK 234
R L + E ++V+ +++AG++ D TY ++ K R +A ++ E M
Sbjct: 379 RSLTSAGNFDEAENIVRTMRNAGYEPDNITYSQMVFGLCKMRRFEEACKVLEDMESSRCI 438
Query: 233 PSVQNCNTLL-----------------KQLSLTDTPDLSLVF----------RVVKKYEA 135
P ++ L+ K + PD L+ R+ YE
Sbjct: 439 PDIKTWTILIQGHCSANEVDKALLCFAKMIEKGCDPDADLLDVLADGFLSQKRIEGAYEL 498
Query: 134 SGH-------TPSKAVYDGIHRSLTSVGRFDEAENIVVTMRNAGYEP 15
+P +A Y + L V +F+EA ++ M++ Y P
Sbjct: 499 VAEISRKCRISPWQATYKKLIEKLLGVMKFEEALELLRLMKSHNYPP 545
>ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
chloroplastic-like [Vitis vinifera]
Length = 631
Score = 370 bits (951), Expect = e-100
Identities = 180/318 (56%), Positives = 241/318 (75%), Gaps = 3/318 (0%)
Frame = -1
Query: 947 LTHETVCYVLKKLDKYPHKALDFFNWASVQNGFKPSLTVYSLMLRILGRKETIKEFWRLL 768
LTHETV YVLKKLDK P + +FFNW + +NGF+PS +YSL+LR L E++K+FW +
Sbjct: 92 LTHETVIYVLKKLDKDPQRTWNFFNWVTEKNGFRPSSAMYSLILRSLVHGESMKQFWVTI 151
Query: 767 KRMKDEGCDIDEETYTTILIHFRCEKMTGDATGFSKYYKKMSEESATDATVKGITDLVLE 588
++MK++G ID+ETY TIL F+ KM + + +Y +M +E+A D VK + +LV
Sbjct: 152 RKMKEQGFCIDKETYLTILGVFKKGKMASEEVALTHFYNRMVQENAMDEVVKKVVELVTM 211
Query: 587 SDWNDDVVRKLGE---ALSENFLLRVFRALRQHPLKAFIIFRWAEKHMGYNHDAVTYNGI 417
S W+ +V +KLGE + S+NF+L V R LR +PLKA F+W + GY H ++TYN I
Sbjct: 212 SVWSSEVEKKLGELKNSFSDNFVLHVLRELRGYPLKALRFFQWVGECPGYEHSSITYNVI 271
Query: 416 LRVLGQEDSIKEFWSVVKELKSAGHDMDIDTYIKLSRHFQKSRLMNDAVELYELMMDGPF 237
RVLG++DSI EFWS+V+E+KS GH+MDIDTYIK+SR FQK++++ DAV+LYE+MMDGP+
Sbjct: 272 ARVLGRDDSIGEFWSMVEEMKSKGHEMDIDTYIKISRQFQKNKMLEDAVKLYEIMMDGPY 331
Query: 236 KPSVQNCNTLLKQLSLTDTPDLSLVFRVVKKYEASGHTPSKAVYDGIHRSLTSVGRFDEA 57
KPSVQ+C LL+ +SL+ PDL+LVFRV +KYEA G++ KAVYDGIHRSLTSVGRFDEA
Sbjct: 332 KPSVQDCTMLLRSISLSSNPDLALVFRVTEKYEAVGNSLCKAVYDGIHRSLTSVGRFDEA 391
Query: 56 ENIVVTMRNAGYEPDNIT 3
I+ +MR+AG EPDNIT
Sbjct: 392 GKIMESMRSAGCEPDNIT 409
Score = 71.6 bits (174), Expect = 3e-10
Identities = 58/232 (25%), Positives = 105/232 (45%), Gaps = 33/232 (14%)
Frame = -1
Query: 608 ITDLVLESDWNDDV---VRKLGEALSENFLLRVFRALRQHPLKAFIIFRWAEKHMGYNHD 438
I +LVLE+DW+D++ + K L+ ++ V + L + P + + F W + G+
Sbjct: 68 IVELVLENDWSDELESELEKSSSVLTHETVIYVLKKLDKDPQRTWNFFNWVTEKNGFRPS 127
Query: 437 AVTYNGILRVLGQEDSIKEFWSVVKELKSAGHDMDIDTYIKLSRHFQKSRLMNDAVEL-- 264
+ Y+ ILR L +S+K+FW ++++K G +D +TY+ + F+K ++ ++ V L
Sbjct: 128 SAMYSLILRSLVHGESMKQFWVTIRKMKEQGFCIDKETYLTILGVFKKGKMASEEVALTH 187
Query: 263 ------YELMMDGPFKPSVQ---------NCNTLLKQLSLTDTPDLSL-VFRVVKKY--- 141
E MD K V+ L +L + + + L V R ++ Y
Sbjct: 188 FYNRMVQENAMDEVVKKVVELVTMSVWSSEVEKKLGELKNSFSDNFVLHVLRELRGYPLK 247
Query: 140 ---------EASGHTPSKAVYDGIHRSLTSVGRFDEAENIVVTMRNAGYEPD 12
E G+ S Y+ I R L E ++V M++ G+E D
Sbjct: 248 ALRFFQWVGECPGYEHSSITYNVIARVLGRDDSIGEFWSMVEEMKSKGHEMD 299
>ref|XP_002877605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297323443|gb|EFH53864.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 618
Score = 350 bits (897), Expect = 4e-94
Identities = 173/319 (54%), Positives = 223/319 (69%), Gaps = 4/319 (1%)
Frame = -1
Query: 947 LTHETVCYVLKKLDKYPHKALDFFNWASVQNGFKPSLTVYSLMLRILGRKETIKEFWRLL 768
LTHET YVL+KL+KYP KA F +W +G PS +YS+MLRIL ++ ++K FW L
Sbjct: 86 LTHETAIYVLRKLEKYPEKAYYFLDWVLRDSGLSPSTPLYSIMLRILVQQRSMKRFWMTL 145
Query: 767 KRMKDEGCDIDEETYTTILIHFRCEKMTGDATGFSKYYKKMSEESATDATVKGITDLVLE 588
MK G +DE+TY TI EK DA + +Y++M +E+A ++ +V +
Sbjct: 146 SEMKQGGFYLDEDTYKTIYGELNKEKSKADAVAVAHFYERMLKENAMSVVAGDVSAVVTK 205
Query: 587 SDWNDDVVRKLGE---ALSENFLLRVFRALRQHPLKAFIIFRWAE-KHMGYNHDAVTYNG 420
DW+ +V R+L E LS+NF++RV + LR+HPLKA F W GY H VTYN
Sbjct: 206 VDWSCEVERELQEMNLVLSDNFVIRVLKELREHPLKALAFFHWVGGSSSGYQHSTVTYNA 265
Query: 419 ILRVLGQEDSIKEFWSVVKELKSAGHDMDIDTYIKLSRHFQKSRLMNDAVELYELMMDGP 240
LRVL + +S+ EFWSVV E+K+AGH+MD+DTYIK+SR FQKSR++ + V+LYE MMDGP
Sbjct: 266 ALRVLARPNSVAEFWSVVDEMKTAGHEMDLDTYIKVSRQFQKSRMITETVKLYEYMMDGP 325
Query: 239 FKPSVQNCNTLLKQLSLTDTPDLSLVFRVVKKYEASGHTPSKAVYDGIHRSLTSVGRFDE 60
FKPS+Q+C+ LL+ LS PDL LVFRV +KYE++G + SKAVYDGIHRSLTSVGRFDE
Sbjct: 326 FKPSIQDCSLLLRYLSARPNPDLDLVFRVSRKYESTGKSLSKAVYDGIHRSLTSVGRFDE 385
Query: 59 AENIVVTMRNAGYEPDNIT 3
AE I MRNAGYEPDNIT
Sbjct: 386 AEEITKAMRNAGYEPDNIT 404
Score = 73.2 bits (178), Expect = 9e-11
Identities = 65/249 (26%), Positives = 105/249 (42%), Gaps = 34/249 (13%)
Frame = -1
Query: 656 YKKMSEESATDATVKGITDLVLESDWNDDV---VRKLGEALSENFLLRVFRALRQHPLKA 486
+K + S D+T++ LVLE+DW+ +V +RK +L+ + V R L ++P KA
Sbjct: 50 WKFRTFSSKPDSTLQ----LVLENDWSKEVEEGLRKPDLSLTHETAIYVLRKLEKYPEKA 105
Query: 485 FIIFRWAEKHMGYNHDAVTYNGILRVLGQEDSIKEFWSVVKELKSAGHDMDIDTYIKLSR 306
+ W + G + Y+ +LR+L Q+ S+K FW + E+K G +D DTY +
Sbjct: 106 YYFLDWVLRDSGLSPSTPLYSIMLRILVQQRSMKRFWMTLSEMKQGGFYLDEDTYKTIYG 165
Query: 305 HFQKSRLMNDAV---ELYELMM---------------------DGPFKPSVQNCNTLLKQ 198
K + DAV YE M+ + +Q N +L
Sbjct: 166 ELNKEKSKADAVAVAHFYERMLKENAMSVVAGDVSAVVTKVDWSCEVERELQEMNLVLSD 225
Query: 197 -------LSLTDTPDLSLVFRVVKKYEASGHTPSKAVYDGIHRSLTSVGRFDEAENIVVT 39
L + P +L F +SG+ S Y+ R L E ++V
Sbjct: 226 NFVIRVLKELREHPLKALAFFHWVGGSSSGYQHSTVTYNAALRVLARPNSVAEFWSVVDE 285
Query: 38 MRNAGYEPD 12
M+ AG+E D
Sbjct: 286 MKTAGHEMD 294