BLASTX nr result
ID: Coptis23_contig00015173
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00015173
(1761 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EEE52627.1| hypothetical protein OsJ_34967 [Oryza sativa Japo... 105 5e-34
gb|ABA96203.1| retrotransposon protein, putative, unclassified, ... 105 5e-34
gb|EEC68711.1| hypothetical protein OsI_37193 [Oryza sativa Indi... 101 5e-33
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta... 99 4e-32
gb|AAP54692.2| retrotransposon protein, putative, unclassified [... 95 2e-31
>gb|EEE52627.1| hypothetical protein OsJ_34967 [Oryza sativa Japonica Group]
Length = 1395
Score = 105 bits (261), Expect(2) = 5e-34
Identities = 59/178 (33%), Positives = 86/178 (48%)
Frame = -2
Query: 1742 KVHYISWNKICLPKSSGGLGIRRASHHNFALQAKLFWRILKEPDKPWVVSLLKKYVHGNS 1563
++H+ W K+C+PK GG+G R N AL AK WR+L +PD L +Y
Sbjct: 329 RIHWQEWWKMCMPKGKGGMGFRDLQSFNLALLAKQVWRLLSDPDSLCARVLRARYYRDGK 388
Query: 1562 ILRVKCPRRGASKIWQGILKARDEILPKLCWHIGTGNDIDIWLDPWIPTLPYNKSM*PMP 1383
+L + + G+S WQ IL W +G G I IW D WIP +N +
Sbjct: 389 LLNARM-KSGSSYTWQSILAGLQCFKQGYIWRVGDGTQIKIWEDNWIPG-SHNMKIQTNR 446
Query: 1382 PVGPYRCVTDLIDPENRSWKRNVLDTIFLPATVKEILKVPLSRQEHNDSIRWLEETNG 1209
V +LIDP N +W ++L TIF P V I+++P+ R +D + W +G
Sbjct: 447 GNNLVATVDELIDPINFTWGGDLLKTIFWPIDVCRIMQIPI-RAGRDDLVAWQYNRSG 503
Score = 67.8 bits (164), Expect(2) = 5e-34
Identities = 26/68 (38%), Positives = 38/68 (55%)
Frame = -1
Query: 1140 QLWKSIWNLNTVEKVKLFFWKTIKNSLPTRENLVNRNIISSATCPRCSNQVESTHHALFH 961
+LWK +WNL K+K+F W+ +K +P R L NR++ S CP C N E H +F
Sbjct: 535 RLWKRLWNLKVPAKIKIFGWRALKGLVPCRAILANRHVGDSGGCPVCQNGPEDIKHMIFT 594
Query: 960 CVMLRHIW 937
C + +W
Sbjct: 595 CARAKQVW 602
>gb|ABA96203.1| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
Length = 1378
Score = 105 bits (261), Expect(2) = 5e-34
Identities = 59/178 (33%), Positives = 86/178 (48%)
Frame = -2
Query: 1742 KVHYISWNKICLPKSSGGLGIRRASHHNFALQAKLFWRILKEPDKPWVVSLLKKYVHGNS 1563
++H+ W K+C+PK GG+G R N AL AK WR+L +PD L +Y
Sbjct: 299 RIHWQEWWKMCMPKGKGGMGFRDLQSFNLALLAKQVWRLLSDPDSLCARVLRARYYRDGK 358
Query: 1562 ILRVKCPRRGASKIWQGILKARDEILPKLCWHIGTGNDIDIWLDPWIPTLPYNKSM*PMP 1383
+L + + G+S WQ IL W +G G I IW D WIP +N +
Sbjct: 359 LLNARM-KSGSSYTWQSILAGLQCFKQGYIWRVGDGTQIKIWEDNWIPG-SHNMKIQTNR 416
Query: 1382 PVGPYRCVTDLIDPENRSWKRNVLDTIFLPATVKEILKVPLSRQEHNDSIRWLEETNG 1209
V +LIDP N +W ++L TIF P V I+++P+ R +D + W +G
Sbjct: 417 GNNLVATVDELIDPINFTWGGDLLKTIFWPIDVCRIMQIPI-RAGRDDLVAWQYNRSG 473
Score = 67.8 bits (164), Expect(2) = 5e-34
Identities = 26/68 (38%), Positives = 38/68 (55%)
Frame = -1
Query: 1140 QLWKSIWNLNTVEKVKLFFWKTIKNSLPTRENLVNRNIISSATCPRCSNQVESTHHALFH 961
+LWK +WNL K+K+F W+ +K +P R L NR++ S CP C N E H +F
Sbjct: 505 RLWKRLWNLKVPAKIKIFGWRALKGLVPCRAILANRHVGDSGGCPVCQNGPEDIKHMIFT 564
Query: 960 CVMLRHIW 937
C + +W
Sbjct: 565 CARAKQVW 572
>gb|EEC68711.1| hypothetical protein OsI_37193 [Oryza sativa Indica Group]
Length = 1546
Score = 101 bits (252), Expect(2) = 5e-33
Identities = 58/178 (32%), Positives = 85/178 (47%)
Frame = -2
Query: 1742 KVHYISWNKICLPKSSGGLGIRRASHHNFALQAKLFWRILKEPDKPWVVSLLKKYVHGNS 1563
++H+ W K+C+PK GG+G R N AL AK WR+ +PD L +Y
Sbjct: 480 RIHWQEWWKMCMPKGKGGMGFRDLQSFNLALLAKQVWRLQSDPDSLCARVLRARYYLDGK 539
Query: 1562 ILRVKCPRRGASKIWQGILKARDEILPKLCWHIGTGNDIDIWLDPWIPTLPYNKSM*PMP 1383
+L + + G+S WQ IL W +G G I IW D WIP +N +
Sbjct: 540 LLNARM-KSGSSYTWQSILAGLQCFKQGYIWRVGDGTQIKIWEDNWIPG-SHNMKIQTNR 597
Query: 1382 PVGPYRCVTDLIDPENRSWKRNVLDTIFLPATVKEILKVPLSRQEHNDSIRWLEETNG 1209
V +LIDP N +W ++L TIF P V I+++P+ R +D + W +G
Sbjct: 598 GNNLVATVDELIDPINFTWGGDLLKTIFWPIDVCRIMQIPI-RAGRDDLVAWQYNRSG 654
Score = 67.8 bits (164), Expect(2) = 5e-33
Identities = 26/68 (38%), Positives = 38/68 (55%)
Frame = -1
Query: 1140 QLWKSIWNLNTVEKVKLFFWKTIKNSLPTRENLVNRNIISSATCPRCSNQVESTHHALFH 961
+LWK +WNL K+K+F W+ +K +P R L NR++ S CP C N E H +F
Sbjct: 686 RLWKRLWNLKVPAKIKIFGWRALKGLVPCRAILANRHVGDSGGCPVCQNGPEDIKHMIFT 745
Query: 960 CVMLRHIW 937
C + +W
Sbjct: 746 CARAKQVW 753
>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1225
Score = 99.0 bits (245), Expect(2) = 4e-32
Identities = 57/183 (31%), Positives = 90/183 (49%)
Frame = -2
Query: 1754 DNTNKVHYISWNKICLPKSSGGLGIRRASHHNFALQAKLFWRILKEPDKPWVVSLLKKYV 1575
+ +N +H+I+W+K+C P S GGLG R N L AK WR+++ P+ L +Y
Sbjct: 711 EESNGIHWIAWDKLCTPFSDGGLGFRTLEEFNLVLLAKQLWRLIRFPNSLLSRVLRGRYF 770
Query: 1574 HGNSILRVKCPRRGASKIWQGILKARDEILPKLCWHIGTGNDIDIWLDPWIPTLPYNKSM 1395
+ +++ R S W+ I+ A+ +L L IG+G +W DPWIP+ P +
Sbjct: 771 RYSDPIQIGKANR-PSFGWRSIMAAKPLLLSGLRRTIGSGMLTRVWEDPWIPSFPPRPAK 829
Query: 1394 *PMPPVGPYRCVTDLIDPENRSWKRNVLDTIFLPATVKEILKVPLSRQEHNDSIRWLEET 1215
+ + V DLIDP + WK L + P+ + IL + SR +D W
Sbjct: 830 SILNIRDTHLYVNDLIDPVTKQWKLGRLQELVDPSDIPLILGIRPSRTYKSDDFSWSFTK 889
Query: 1214 NGN 1206
+GN
Sbjct: 890 SGN 892
Score = 67.4 bits (163), Expect(2) = 4e-32
Identities = 41/129 (31%), Positives = 59/129 (45%), Gaps = 2/129 (1%)
Frame = -1
Query: 1137 LWKSIWNLNTVEKVKLFFWKTIKNSLPTRENLVNRNIISSATCPRCSNQVESTHHALFHC 958
L +W + T K K F W+ + L T + L +R+I + CPRC + ES +H LF C
Sbjct: 922 LQAQVWKIKTTRKFKHFEWQCLSGCLATNQRLFSRHIGTEKVCPRCGAEEESINHLLFLC 981
Query: 957 VMLRHIWYDYKLS-IRTDHWXXXXXXXXXXXXXXTMLNSKNDIKDTLSELAS-IMYSIWT 784
R IW LS I + + + DI + + E+ I++ IW
Sbjct: 982 PPSRQIW---ALSPIPSSEYIFPRNSLFYNFDFLLSRGKEFDIAEDIMEIFPWILWYIWK 1038
Query: 783 SRNEFIFNN 757
SRN FIF N
Sbjct: 1039 SRNRFIFEN 1047
>gb|AAP54692.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1585
Score = 94.7 bits (234), Expect(2) = 2e-31
Identities = 62/186 (33%), Positives = 86/186 (46%), Gaps = 2/186 (1%)
Frame = -2
Query: 1757 EDNTNKVHYISWNKICLPKSSGGLGIRRASHHNFALQAKLFWRILKEPDKPWVVSLLKKY 1578
E K H+ +W + KS GGLG + N AL A+ WR++ PD L KY
Sbjct: 1227 EKGKRKTHWKAWKSLTKSKSLGGLGFKDIRLFNQALLARQAWRLIDNPDSLCARVLKAKY 1286
Query: 1577 VHGNSILRVKCPRRGASKIWQGILKARDEILPKLCWHIGTGNDIDIWLDPWIPTLPYNKS 1398
SI+ AS WQ I + + + W IG G + +W DPW LP + S
Sbjct: 1287 YPNGSIVDTSF-GGNASPGWQAIEHGLELVKKGIIWRIGNGRSVRVWQDPW---LPRDLS 1342
Query: 1397 M*PMPPVGPYRC--VTDLIDPENRSWKRNVLDTIFLPATVKEILKVPLSRQEHNDSIRWL 1224
P+ P R V DL+ +N W N ++ IFLP V+ ILK+ S ++ D I W
Sbjct: 1343 RRPITPKNNCRIKWVADLM-LDNGMWDANKINQIFLPVDVEIILKLRTSSRDEEDFIAWH 1401
Query: 1223 EETNGN 1206
+ GN
Sbjct: 1402 PDKLGN 1407
Score = 69.3 bits (168), Expect(2) = 2e-31
Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Frame = -1
Query: 1143 RQLWKSIWNLNTVEKVKLFFWKTIKNSLPTRENLVNRNIISSATCPRCSNQVESTHHALF 964
R+ W+ +W N KVK+F W+ N LPT +N RN+ S TC C + E T HAL
Sbjct: 1435 RKAWELLWKCNVPSKVKIFTWRATSNCLPTWDNKKKRNLEISDTCVICGMEKEDTMHALC 1494
Query: 963 HCVMLRHIWYDYK----LSIRTD 907
C +H+W K LS+R D
Sbjct: 1495 RCPQAKHLWLAMKESNDLSLRMD 1517