BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00015167
         (330 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containi...    79   3e-13
ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containi...    65   4e-09
ref|NP_192561.1| pentatricopeptide repeat-containing protein [Ar...    60   2e-07
ref|XP_002874524.1| pentatricopeptide repeat-containing protein ...    59   5e-07
ref|XP_004168473.1| PREDICTED: pentatricopeptide repeat-containi...    58   7e-07

>ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 43/91 (47%), Positives = 61/91 (67%)
 Frame = +2

Query: 47  PFIIQRIIALLQEYSKHPICVEAIHAHIITHSLSANEDVARKLIKAYSDVGHLNDACKVF 226
           P II   ++LL+E SK+ I V++ HA IIT+SLS ++ VA KL+KAYSD+  L  A  VF
Sbjct: 28  PTIIHNFLSLLRESSKNLIWVKSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVF 87

Query: 227 GQILDGNTLVWNAMIGGYLKNERYEKVVELY 319
            Q      L+ NAM+ GYL++ RY + +EL+
Sbjct: 88  DQFFQPKGLLCNAMLCGYLQSGRYRETLELF 118


>ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 36/84 (42%), Positives = 53/84 (63%)
 Frame = +2

Query: 71  ALLQEYSKHPICVEAIHAHIITHSLSANEDVARKLIKAYSDVGHLNDACKVFGQILDGNT 250
           +LL ++S   I V++IHA II + +S    +A KLI+ YSD+G L  A  VF Q     T
Sbjct: 51  SLLHQFSNTLIHVKSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPET 110

Query: 251 LVWNAMIGGYLKNERYEKVVELYR 322
            V NAMI G+L+N+++ +V  L+R
Sbjct: 111 AVCNAMIAGFLRNQQHMEVPRLFR 134


>ref|NP_192561.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75208454|sp|Q9SUF9.1|PP305_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g08210 gi|5262194|emb|CAB45791.1| putative protein
           [Arabidopsis thaliana] gi|7267461|emb|CAB81157.1|
           putative protein [Arabidopsis thaliana]
           gi|332657209|gb|AEE82609.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 686

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 27/73 (36%), Positives = 43/73 (58%)
 Frame = +2

Query: 110 EAIHAHIITHSLSANEDVARKLIKAYSDVGHLNDACKVFGQILDGNTLVWNAMIGGYLKN 289
           E+I AH+I   +S N  +A  +I  Y D   L+DA KVF ++ + N + W  M+ GY  +
Sbjct: 25  ESIQAHVIKQGISQNVFIANNVISMYVDFRLLSDAHKVFDEMSERNIVTWTTMVSGYTSD 84

Query: 290 ERYEKVVELYRKI 328
            +  K +ELYR++
Sbjct: 85  GKPNKAIELYRRM 97


>ref|XP_002874524.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297320361|gb|EFH50783.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 688

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 27/73 (36%), Positives = 43/73 (58%)
 Frame = +2

Query: 110 EAIHAHIITHSLSANEDVARKLIKAYSDVGHLNDACKVFGQILDGNTLVWNAMIGGYLKN 289
           E+I AHI+   +S N  +A  +I  Y D   L+DA KVF ++ + N + W  M+ GY  +
Sbjct: 25  ESIQAHIVKQGISQNVFLANNVISMYVDFRLLSDAHKVFDEMTERNIVTWTTMVSGYTCD 84

Query: 290 ERYEKVVELYRKI 328
            +  K +ELYR++
Sbjct: 85  GKPSKAIELYRRM 97


>ref|XP_004168473.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like, partial [Cucumis sativus]
          Length = 670

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 28/65 (43%), Positives = 43/65 (66%)
 Frame = +2

Query: 128 IITHSLSANEDVARKLIKAYSDVGHLNDACKVFGQILDGNTLVWNAMIGGYLKNERYEKV 307
           IIT+ +  ++ +  KL+ AYS +G L +A KVF +I    T++ NAM+ GYL+NERY   
Sbjct: 80  IITNPIYGDQFLVAKLVAAYSSLGCLENARKVFDEIPQPKTVLCNAMVNGYLQNERYNDC 139

Query: 308 VELYR 322
           +EL +
Sbjct: 140 IELLK 144