BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00015164
         (557 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_565733.1| DNA repair protein RAD50 [Arabidopsis thaliana]...    91   5e-23
ref|XP_002862938.1| hypothetical protein ARALYDRAFT_920987 [Arab...    91   5e-23
ref|XP_003601682.1| DNA repair protein Rad50 [Medicago truncatul...    89   7e-23
ref|XP_002266665.2| PREDICTED: LOW QUALITY PROTEIN: DNA repair p...    88   9e-23
gb|AEP33775.1| Rad50 [Physcomitrella patens] gi|347954556|gb|AEP...    86   2e-20

>ref|NP_565733.1| DNA repair protein RAD50 [Arabidopsis thaliana]
            gi|57013013|sp|Q9SL02.2|RAD50_ARATH RecName: Full=DNA
            repair protein RAD50; Short=AtRAD50
            gi|7110148|gb|AAF36810.1|AF168748_1 DNA
            repair-recombination protein [Arabidopsis thaliana]
            gi|20197622|gb|AAD15407.2| putative RAD50 DNA repair
            protein [Arabidopsis thaliana] gi|22654997|gb|AAM98090.1|
            At2g31970/F22D22.28 [Arabidopsis thaliana]
            gi|29028758|gb|AAO64758.1| At2g31970/F22D22.28
            [Arabidopsis thaliana] gi|330253520|gb|AEC08614.1| DNA
            repair protein RAD50 [Arabidopsis thaliana]
          Length = 1316

 Score = 90.5 bits (223), Expect(2) = 5e-23
 Identities = 42/49 (85%), Positives = 45/49 (91%)
 Frame = +3

Query: 102  LMRFHSMKMEEINKIIRELWQQTYRGQDIDYISIHSDFESAGT*SYSYR 248
            LMRFH+MKMEEINKIIRELWQQTYRGQD+DYI IHSD E AGT SYSY+
Sbjct: 1147 LMRFHTMKMEEINKIIRELWQQTYRGQDMDYIRIHSDSEGAGTRSYSYK 1195



 Score = 42.4 bits (98), Expect(2) = 5e-23
 Identities = 20/31 (64%), Positives = 24/31 (77%)
 Frame = +2

Query: 245  QMLMQTGDAKLEMRGRCSAGQKEVCECEERL 337
            ++LMQTGD +LEMRGRCSAGQK +     RL
Sbjct: 1195 KVLMQTGDTELEMRGRCSAGQKVLASLIIRL 1225


>ref|XP_002862938.1| hypothetical protein ARALYDRAFT_920987 [Arabidopsis lyrata subsp.
           lyrata] gi|297308718|gb|EFH39197.1| hypothetical protein
           ARALYDRAFT_920987 [Arabidopsis lyrata subsp. lyrata]
          Length = 186

 Score = 90.5 bits (223), Expect(2) = 5e-23
 Identities = 42/49 (85%), Positives = 45/49 (91%)
 Frame = +3

Query: 102 LMRFHSMKMEEINKIIRELWQQTYRGQDIDYISIHSDFESAGT*SYSYR 248
           LMRFH+MKMEEINKIIRELWQQTYRGQD+DYI IHSD E AGT SYSY+
Sbjct: 17  LMRFHTMKMEEINKIIRELWQQTYRGQDMDYIRIHSDSEGAGTRSYSYK 65



 Score = 42.4 bits (98), Expect(2) = 5e-23
 Identities = 20/31 (64%), Positives = 24/31 (77%)
 Frame = +2

Query: 245 QMLMQTGDAKLEMRGRCSAGQKEVCECEERL 337
           ++LMQTGD +LEMRGRCSAGQK +     RL
Sbjct: 65  KVLMQTGDTELEMRGRCSAGQKVLASLIIRL 95


>ref|XP_003601682.1| DNA repair protein Rad50 [Medicago truncatula]
            gi|355490730|gb|AES71933.1| DNA repair protein Rad50
            [Medicago truncatula]
          Length = 1524

 Score = 88.6 bits (218), Expect(2) = 7e-23
 Identities = 42/49 (85%), Positives = 44/49 (89%)
 Frame = +3

Query: 102  LMRFHSMKMEEINKIIRELWQQTYRGQDIDYISIHSDFESAGT*SYSYR 248
            LMRFH+MKMEEINKIIRELWQQTYRGQDID ISIHSD E  GT SYSY+
Sbjct: 1355 LMRFHTMKMEEINKIIRELWQQTYRGQDIDCISIHSDSEGGGTRSYSYK 1403



 Score = 43.9 bits (102), Expect(2) = 7e-23
 Identities = 21/31 (67%), Positives = 25/31 (80%)
 Frame = +2

Query: 245  QMLMQTGDAKLEMRGRCSAGQKEVCECEERL 337
            ++LMQTGDA+LEMRGRCSAGQK +     RL
Sbjct: 1403 KVLMQTGDAELEMRGRCSAGQKVLASLIIRL 1433


>ref|XP_002266665.2| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein RAD50-like [Vitis
            vinifera]
          Length = 1316

 Score = 88.2 bits (217), Expect(2) = 9e-23
 Identities = 42/49 (85%), Positives = 44/49 (89%)
 Frame = +3

Query: 102  LMRFHSMKMEEINKIIRELWQQTYRGQDIDYISIHSDFESAGT*SYSYR 248
            LMRFH+MKMEEINKIIRELWQQTYRGQDID I IHSD E AGT SYSY+
Sbjct: 1147 LMRFHTMKMEEINKIIRELWQQTYRGQDIDCIRIHSDSEGAGTRSYSYK 1195



 Score = 43.9 bits (102), Expect(2) = 9e-23
 Identities = 21/31 (67%), Positives = 25/31 (80%)
 Frame = +2

Query: 245  QMLMQTGDAKLEMRGRCSAGQKEVCECEERL 337
            ++LMQTGDA+LEMRGRCSAGQK +     RL
Sbjct: 1195 KVLMQTGDAELEMRGRCSAGQKVLASLIIRL 1225


>gb|AEP33775.1| Rad50 [Physcomitrella patens] gi|347954556|gb|AEP33778.1| Rad50
            [Physcomitrella patens]
          Length = 1314

 Score = 85.5 bits (210), Expect(2) = 2e-20
 Identities = 40/53 (75%), Positives = 44/53 (83%)
 Frame = +3

Query: 102  LMRFHSMKMEEINKIIRELWQQTYRGQDIDYISIHSDFESAGT*SYSYRCSCR 260
            L+RFHSMKMEEINKI++ELWQQTYRGQDID+I I SD E  GT SYSYR   R
Sbjct: 1145 LLRFHSMKMEEINKIVKELWQQTYRGQDIDFIEIRSDAEGMGTRSYSYRVVMR 1197



 Score = 38.5 bits (88), Expect(2) = 2e-20
 Identities = 17/31 (54%), Positives = 25/31 (80%)
 Frame = +2

Query: 245  QMLMQTGDAKLEMRGRCSAGQKEVCECEERL 337
            +++M++GDA+L+MRGRCSAGQK +     RL
Sbjct: 1193 RVVMRSGDAELDMRGRCSAGQKVLASLIIRL 1223